Cp4.1LG03g16500.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g16500.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 13279869 .. 13280312 (-)
Sequence length444
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAGTGTCGACACTCGGGCATCATCCTCAGCATCTCCGCGTCCTTATACTCACAGAGGCAGATGGAGCAGACGCAATCGGCTCCGGCCATGGATTTATCCCTGGAGAAGGGGAATTTAGGGTAAGAGTTAATGACAGCCTGGTCGAGGCCAAGGACGCCGTTATCATCGTTGGGATCTGGAGAGGCGTCGTCCTCGGCGACGAAGATGATCTGAGGGAGAATGATTCCGGCATCGGAACGAGAGGGAGCGGAGTGGCGGTGGAGATAGCGGGAGCGGGAGCGGGAGCGGGAGGCGCGACAGCAGACGTAGAAGGCGAGAAGAAGAGCGGAGAGGAGGACGAGGAAGGCGAGGGCTATGGCAATGGCGTAGCCGAGGCCGATCTTAGAGAAGGAGTAATTGGAAGAGGAGGAGGAGGAAGAAGGGGAGATGGACATTGA

mRNA sequence

ATGGAAGCAGTGTCGACACTCGGGCATCATCCTCAGCATCTCCGCGTCCTTATACTCACAGAGGCAGATGGAGCAGACGCAATCGGCTCCGGCCATGGATTTATCCCTGGAGAAGGGGAATTTAGGGTAAGAGTTAATGACAGCCTGGTCGAGGCCAAGGACGCCGTTATCATCGTTGGGATCTGGAGAGGCGTCGTCCTCGGCGACGAAGATGATCTGAGGGAGAATGATTCCGGCATCGGAACGAGAGGGAGCGGAGTGGCGGTGGAGATAGCGGGAGCGGGAGCGGGAGCGGGAGGCGCGACAGCAGACGTAGAAGGCGAGAAGAAGAGCGGAGAGGAGGACGAGGAAGGCGAGGGCTATGGCAATGGCGTAGCCGAGGCCGATCTTAGAGAAGGAGTAATTGGAAGAGGAGGAGGAGGAAGAAGGGGAGATGGACATTGA

Coding sequence (CDS)

ATGGAAGCAGTGTCGACACTCGGGCATCATCCTCAGCATCTCCGCGTCCTTATACTCACAGAGGCAGATGGAGCAGACGCAATCGGCTCCGGCCATGGATTTATCCCTGGAGAAGGGGAATTTAGGGTAAGAGTTAATGACAGCCTGGTCGAGGCCAAGGACGCCGTTATCATCGTTGGGATCTGGAGAGGCGTCGTCCTCGGCGACGAAGATGATCTGAGGGAGAATGATTCCGGCATCGGAACGAGAGGGAGCGGAGTGGCGGTGGAGATAGCGGGAGCGGGAGCGGGAGCGGGAGGCGCGACAGCAGACGTAGAAGGCGAGAAGAAGAGCGGAGAGGAGGACGAGGAAGGCGAGGGCTATGGCAATGGCGTAGCCGAGGCCGATCTTAGAGAAGGAGTAATTGGAAGAGGAGGAGGAGGAAGAAGGGGAGATGGACATTGA

Protein sequence

MEAVSTLGHHPQHLRVLILTEADGADAIGSGHGFIPGEGEFRVRVNDSLVEAKDAVIIVGIWRGVVLGDEDDLRENDSGIGTRGSGVAVEIAGAGAGAGGATADVEGEKKSGEEDEEGEGYGNGVAEADLREGVIGRGGGGRRGDGH
Homology
[Close]
BLAST of Cp4.1LG03g16500.1 vs. TrEMBL
Match: A0A0A0L8R4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121040 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38
Identity = 93/141 (65.96%), Postives = 105/141 (74.47%), Query Frame = 1 

Query: 1   MEAVSTLGHHPQHLRVLILTEADGADAIGSGHGFIPGEGEFRVRVNDSLVEAKDAVIIVG 60
           ME VSTL HHPQHLR+LILTE D AD I S HGFI GE EFRVRVN+ LV+  + V+IV 
Sbjct: 51  MEVVSTLRHHPQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVA 110

Query: 61  IWRGVVLGDEDDLRENDSGIGT-RGSGVAVEIAGAGAGAGGATADVEGEKKSGEEDEEGE 120
           IW GVVL +E+DL END+G+G  R  G A E+AG G     ATADVE E+K GEEDEEGE
Sbjct: 111 IWSGVVLSNENDLGENDAGVGAGRRRGRAAEVAGTGC----ATADVESEEKGGEEDEEGE 170

Query: 121 GYGNGVAEADLREGVIGRGGG 141
            YGNGVAEAD  EG+ GR GG
Sbjct: 171 CYGNGVAEADPGEGISGRRGG 187

[Close]
BLAST of Cp4.1LG03g16500.1 vs. TrEMBL
Match: A0A0Q3GED4_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g49151 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-06
Identity = 59/153 (38.56%), Postives = 74/153 (48.37%), Query Frame = 1 

Query: 1   MEAVSTLGHHPQHLRVLILTEADGADAIG-SGHGFIPGEGEFRVRVNDSLVEAKDAV--- 60
           +E V  LGH  QHL V +L EAD A  +G  G G  PGEG   VR +   VE        
Sbjct: 56  VEPVPALGHQTQHLPVPVLAEADRAHGVGVGGSGPGPGEGGLGVRRDGGGVEPDGGRGGR 115

Query: 61  --IIVGIWRGVVLGDEDDLRENDSGIGTRGSGV--AVEIAGAGAGAGGATADVEGEKKSG 120
               VG+     LGDE+  R+ D  +   G G   A E+A A        A+V  E++ G
Sbjct: 116 GRRGVGVGGLGPLGDEEHARDGDGEVAGAGGGREGAREVAAAPGRPAVPEAEVGREEEGG 175

Query: 121 EEDEEGEGYGNGVAEADLREGVIGRGGGGRRGD 146
           +E EE E  G+GVAEA+   G  G  G G  GD
Sbjct: 176 KEHEEAERDGDGVAEAE--RGERGEDGSGGHGD 206

[Close]
BLAST of Cp4.1LG03g16500.1 vs. NCBI nr
Match: gi|700201343|gb|KGN56476.1| (hypothetical protein Csa_3G121040 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.2e-38
Identity = 93/141 (65.96%), Postives = 105/141 (74.47%), Query Frame = 1 

Query: 1   MEAVSTLGHHPQHLRVLILTEADGADAIGSGHGFIPGEGEFRVRVNDSLVEAKDAVIIVG 60
           ME VSTL HHPQHLR+LILTE D AD I S HGFI GE EFRVRVN+ LV+  + V+IV 
Sbjct: 51  MEVVSTLRHHPQHLRILILTETDRADTISSSHGFISGEREFRVRVNNGLVKTHNPVVIVA 110

Query: 61  IWRGVVLGDEDDLRENDSGIGT-RGSGVAVEIAGAGAGAGGATADVEGEKKSGEEDEEGE 120
           IW GVVL +E+DL END+G+G  R  G A E+AG G     ATADVE E+K GEEDEEGE
Sbjct: 111 IWSGVVLSNENDLGENDAGVGAGRRRGRAAEVAGTGC----ATADVESEEKGGEEDEEGE 170

Query: 121 GYGNGVAEADLREGVIGRGGG 141
            YGNGVAEAD  EG+ GR GG
Sbjct: 171 CYGNGVAEADPGEGISGRRGG 187

[Close]
BLAST of Cp4.1LG03g16500.1 vs. NCBI nr
Match: gi|944074132|gb|KQK09616.1| (hypothetical protein BRADI_2g49151 [Brachypodium distachyon])

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 59/153 (38.56%), Postives = 74/153 (48.37%), Query Frame = 1 

Query: 1   MEAVSTLGHHPQHLRVLILTEADGADAIG-SGHGFIPGEGEFRVRVNDSLVEAKDAV--- 60
           +E V  LGH  QHL V +L EAD A  +G  G G  PGEG   VR +   VE        
Sbjct: 56  VEPVPALGHQTQHLPVPVLAEADRAHGVGVGGSGPGPGEGGLGVRRDGGGVEPDGGRGGR 115

Query: 61  --IIVGIWRGVVLGDEDDLRENDSGIGTRGSGV--AVEIAGAGAGAGGATADVEGEKKSG 120
               VG+     LGDE+  R+ D  +   G G   A E+A A        A+V  E++ G
Sbjct: 116 GRRGVGVGGLGPLGDEEHARDGDGEVAGAGGGREGAREVAAAPGRPAVPEAEVGREEEGG 175

Query: 121 EEDEEGEGYGNGVAEADLREGVIGRGGGGRRGD 146
           +E EE E  G+GVAEA+   G  G  G G  GD
Sbjct: 176 KEHEEAERDGDGVAEAE--RGERGEDGSGGHGD 206

[Close]
BLAST of Cp4.1LG03g16500.1 vs. NCBI nr
Match: gi|992273294|gb|KXG33318.1| (hypothetical protein SORBI_003G288400 [Sorghum bicolor])

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 61/155 (39.35%), Postives = 77/155 (49.68%), Query Frame = 1 

Query: 1   MEAVSTLGHHPQHLRVLILTEADGADAIGSGHGFIPGEGEFRVRVNDSLVEAKDAVIIVG 60
           +EAV  LGHH QHL V +L EADGA  +        GEG+  V  +   VE        G
Sbjct: 58  VEAVPALGHHAQHLAVPVLAEADGAHGVRLRGP--AGEGDLGVGRDGGGVEPDGGAGRRG 117

Query: 61  IWRGV--VLG------DEDDLREND---SGIGTRGSGVAVEIAGAGAGAGGATADVEGEK 120
              GV  V+G      DE+  R+ D   +G G RG      +  A A A  A A+VE ++
Sbjct: 118 GGGGVGGVVGGLGPLRDEEHARDGDGEVAGAGGRGDRFTGPVVPAAAAAT-AEAEVESQQ 177

Query: 121 KSGEEDEEGEGYGNGVAEADLREGVIGRGGGGRRG 145
           + GE+DEE E  G+GVAEA   E    RG  G RG
Sbjct: 178 EGGEQDEEAERDGDGVAEAQAGE----RGEEGHRG 205

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g16500.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g16500.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8R4_CUCSA1.5e-3865.96Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121040 PE=4 SV=1[more]
A0A0Q3GED4_BRADI4.5e-0638.56Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_2g49151 PE=4 SV=1[more]
BLAST of Cp4.1LG03g16500.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g16500.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201343|gb|KGN56476.1|2.2e-3865.96hypothetical protein Csa_3G121040 [Cucumis sativus][more]
gi|944074132|gb|KQK09616.1|6.5e-0638.56hypothetical protein BRADI_2g49151 [Brachypodium distachyon][more]
gi|992273294|gb|KXG33318.1|6.5e-0639.35hypothetical protein SORBI_003G288400 [Sorghum bicolor][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG03g16500Cp4.1LG03g16500gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG03g16500.1:cds:001Cp4.1LG03g16500.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG03g16500.1Cp4.1LG03g16500.1-proteinpolypeptide