Cp4.1LG03g12790 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g12790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG03 : 10036182 .. 10036609 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCTCTTCCATTACCGCCGATCAGAGTGATGGCTCCAATAGTTCCTTTGAACAAGTTGCAGAGGAGACCACCTCTGATGGAGGTGAATCAATGCGGCTATCTTTAGATTCCCCGTCGTCTTCTCCGCTTCCGTTTTCCGAGAGCCGCTGGAGTCTTATGAACTCATTTCCTGCCTTCTTGTTGTCTTTGCTGAATCTTCAGATTCAAAGCTGATTCCGGATGGAGAGTTCGATTTCGATTGGTTTCGGTTTTGTTTTCCGAGTCCGTCATTTCGGAGCGGTTTCGATTTCGGAGTGAAATTAGCAGGATTTGTAGCAATCGAAGATGTTGACGGTGAAGAACCGTTGTTCTGGCCGCTCGTACATAAAATCGATGAAGGATTGGGACTGGTTTTCGATTTCACCACGGAAAAAGGAGTTTAA

mRNA sequence

ATGGAAATCTCTTCCATTACCGCCGATCAGAGTGATGGCTCCAATAGTTCCTTTGAACAAGTTGCAGAGGAGACCACCTCTGATGGAGATTCAAAGCTGATTCCGGATGGAGAGTTCGATTTCGATTGGTTTCGGTTTTGTTTTCCGAGTCCGTCATTTCGGAGCGGTTTCGATTTCGGAGTGAAATTAGCAGGATTTGTAGCAATCGAAGATGTTGACGGTGAAGAACCGTTGTTCTGGCCGCTCGTACATAAAATCGATGAAGGATTGGGACTGGTTTTCGATTTCACCACGGAAAAAGGAGTTTAA

Coding sequence (CDS)

ATGGAAATCTCTTCCATTACCGCCGATCAGAGTGATGGCTCCAATAGTTCCTTTGAACAAGTTGCAGAGGAGACCACCTCTGATGGAGATTCAAAGCTGATTCCGGATGGAGAGTTCGATTTCGATTGGTTTCGGTTTTGTTTTCCGAGTCCGTCATTTCGGAGCGGTTTCGATTTCGGAGTGAAATTAGCAGGATTTGTAGCAATCGAAGATGTTGACGGTGAAGAACCGTTGTTCTGGCCGCTCGTACATAAAATCGATGAAGGATTGGGACTGGTTTTCGATTTCACCACGGAAAAAGGAGTTTAA

Protein sequence

MEISSITADQSDGSNSSFEQVAEETTSDGDSKLIPDGEFDFDWFRFCFPSPSFRSGFDFGVKLAGFVAIEDVDGEEPLFWPLVHKIDEGLGLVFDFTTEKGV

Homology

[Close]

BLAST of Cp4.1LG03g12790 vs. TrEMBL
Match: A0A0A0KTY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015110 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 62/110 (56.36%), Postives = 66/110 (60.00%), Query Frame = 1


Query: 1   MEISSITADQSDGSNSSFEQVAEE---------------------TTSDGDSKLIPDGEF 60
           MEISS+TADQ    NSS EQVAE                           DSKLIPDGEF
Sbjct: 1   MEISSLTADQIHAYNSSDEQVAEIRLFLDSNNRWNFLNSSPAFLLNLEREDSKLIPDGEF 60

Query: 61  DFDWFRFCFPSPSFRSGFDFGVKLAGFVAIEDVDGE---EPLFWPLVHKI 87
           DFDWF+  FPSPSFRSGF+F VKLA   AIED DGE    PLFWPL H+I
Sbjct: 61  DFDWFQSNFPSPSFRSGFNFEVKLA---AIEDADGEIRDGPLFWPLEHEI 107

[Close]

BLAST of Cp4.1LG03g12790 vs. NCBI nr
Match: gi|778690009|ref|XP_011653051.1| (PREDICTED: uncharacterized protein LOC105435170 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 62/110 (56.36%), Postives = 66/110 (60.00%), Query Frame = 1


Query: 1   MEISSITADQSDGSNSSFEQVAEE---------------------TTSDGDSKLIPDGEF 60
           MEISS+TADQ    NSS EQVAE                           DSKLIPDGEF
Sbjct: 31  MEISSLTADQIHAYNSSDEQVAEIRLFLDSNNRWNFLNSSPAFLLNLEREDSKLIPDGEF 90

Query: 61  DFDWFRFCFPSPSFRSGFDFGVKLAGFVAIEDVDGE---EPLFWPLVHKI 87
           DFDWF+  FPSPSFRSGF+F VKLA   AIED DGE    PLFWPL H+I
Sbjct: 91  DFDWFQSNFPSPSFRSGFNFEVKLA---AIEDADGEIRDGPLFWPLEHEI 137

[Close]

BLAST of Cp4.1LG03g12790 vs. NCBI nr
Match: gi|700197912|gb|KGN53070.1| (hypothetical protein Csa_4G015110 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 62/110 (56.36%), Postives = 66/110 (60.00%), Query Frame = 1


Query: 1   MEISSITADQSDGSNSSFEQVAEE---------------------TTSDGDSKLIPDGEF 60
           MEISS+TADQ    NSS EQVAE                           DSKLIPDGEF
Sbjct: 1   MEISSLTADQIHAYNSSDEQVAEIRLFLDSNNRWNFLNSSPAFLLNLEREDSKLIPDGEF 60

Query: 61  DFDWFRFCFPSPSFRSGFDFGVKLAGFVAIEDVDGE---EPLFWPLVHKI 87
           DFDWF+  FPSPSFRSGF+F VKLA   AIED DGE    PLFWPL H+I
Sbjct: 61  DFDWFQSNFPSPSFRSGFNFEVKLA---AIEDADGEIRDGPLFWPLEHEI 107

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g12790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g12790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTY2_CUCSA	1.4e-17	56.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015110 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g12790 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g12790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778690009\|ref\|XP_011653051.1\|	1.9e-17	56.36	PREDICTED: uncharacterized protein LOC105435170 [Cucumis sativus]	[more]
gi\|700197912\|gb\|KGN53070.1\|	1.9e-17	56.36	hypothetical protein Csa_4G015110 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g12790.1	Cp4.1LG03g12790.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g12790	Cucsa.094870	Cucumber (Gy14) v1	cgycpeB0197
Cp4.1LG03g12790	CmoCh14G015060	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g12790	Cla010853	Watermelon (97103) v1	cpewmB604
Cp4.1LG03g12790	Csa4G015110	Cucumber (Chinese Long) v2	cpecuB615
Cp4.1LG03g12790	MELO3C017723	Melon (DHL92) v3.5.1	cpemeB588
Cp4.1LG03g12790	ClCG07G015580	Watermelon (Charleston Gray)	cpewcgB566
Cp4.1LG03g12790	CSPI04G03290	Wild cucumber (PI 183967)	cpecpiB617
Cp4.1LG03g12790	Lsi07G000390	Bottle gourd (USVL1VR-Ls)	cpelsiB513
Cp4.1LG03g12790	MELO3C017723.2	Melon (DHL92) v3.6.1	cpemedB698
Cp4.1LG03g12790	CsaV3_4G003270	Cucumber (Chinese Long) v3	cpecucB0767
Cp4.1LG03g12790	Bhi01G002171	Wax gourd	cpewgoB0778
Cp4.1LG03g12790	CsGy4G003170	Cucumber (Gy14) v2	cgybcpeB552
Cp4.1LG03g12790	Carg27249	Silver-seed gourd	carcpeB0550

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g12790	Silver-seed gourd	carcpeB0973
Cp4.1LG03g12790	Cucurbita pepo (Zucchini)	cpecpeB482
Cp4.1LG03g12790	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g12790	Cucurbita maxima (Rimu)	cmacpeB837
Cp4.1LG03g12790	Cucurbita moschata (Rifu)	cmocpeB787