Cp4.1LG03g12790.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g12790.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 10036182 .. 10036609 (+)
Sequence length309
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCTCTTCCATTACCGCCGATCAGAGTGATGGCTCCAATAGTTCCTTTGAACAAGTTGCAGAGGAGACCACCTCTGATGGAGGTGAATCAATGCGGCTATCTTTAGATTCCCCGTCGTCTTCTCCGCTTCCGTTTTCCGAGAGCCGCTGGAGTCTTATGAACTCATTTCCTGCCTTCTTGTTGTCTTTGCTGAATCTTCAGATTCAAAGCTGATTCCGGATGGAGAGTTCGATTTCGATTGGTTTCGGTTTTGTTTTCCGAGTCCGTCATTTCGGAGCGGTTTCGATTTCGGAGTGAAATTAGCAGGATTTGTAGCAATCGAAGATGTTGACGGTGAAGAACCGTTGTTCTGGCCGCTCGTACATAAAATCGATGAAGGATTGGGACTGGTTTTCGATTTCACCACGGAAAAAGGAGTTTAA

mRNA sequence

ATGGAAATCTCTTCCATTACCGCCGATCAGAGTGATGGCTCCAATAGTTCCTTTGAACAAGTTGCAGAGGAGACCACCTCTGATGGAGATTCAAAGCTGATTCCGGATGGAGAGTTCGATTTCGATTGGTTTCGGTTTTGTTTTCCGAGTCCGTCATTTCGGAGCGGTTTCGATTTCGGAGTGAAATTAGCAGGATTTGTAGCAATCGAAGATGTTGACGGTGAAGAACCGTTGTTCTGGCCGCTCGTACATAAAATCGATGAAGGATTGGGACTGGTTTTCGATTTCACCACGGAAAAAGGAGTTTAA

Coding sequence (CDS)

ATGGAAATCTCTTCCATTACCGCCGATCAGAGTGATGGCTCCAATAGTTCCTTTGAACAAGTTGCAGAGGAGACCACCTCTGATGGAGATTCAAAGCTGATTCCGGATGGAGAGTTCGATTTCGATTGGTTTCGGTTTTGTTTTCCGAGTCCGTCATTTCGGAGCGGTTTCGATTTCGGAGTGAAATTAGCAGGATTTGTAGCAATCGAAGATGTTGACGGTGAAGAACCGTTGTTCTGGCCGCTCGTACATAAAATCGATGAAGGATTGGGACTGGTTTTCGATTTCACCACGGAAAAAGGAGTTTAA

Protein sequence

MEISSITADQSDGSNSSFEQVAEETTSDGDSKLIPDGEFDFDWFRFCFPSPSFRSGFDFGVKLAGFVAIEDVDGEEPLFWPLVHKIDEGLGLVFDFTTEKGV
Homology
[Close]
BLAST of Cp4.1LG03g12790.1 vs. TrEMBL
Match: A0A0A0KTY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015110 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 62/110 (56.36%), Postives = 66/110 (60.00%), Query Frame = 1 

Query: 1   MEISSITADQSDGSNSSFEQVAEE---------------------TTSDGDSKLIPDGEF 60
           MEISS+TADQ    NSS EQVAE                           DSKLIPDGEF
Sbjct: 1   MEISSLTADQIHAYNSSDEQVAEIRLFLDSNNRWNFLNSSPAFLLNLEREDSKLIPDGEF 60

Query: 61  DFDWFRFCFPSPSFRSGFDFGVKLAGFVAIEDVDGE---EPLFWPLVHKI 87
           DFDWF+  FPSPSFRSGF+F VKLA   AIED DGE    PLFWPL H+I
Sbjct: 61  DFDWFQSNFPSPSFRSGFNFEVKLA---AIEDADGEIRDGPLFWPLEHEI 107

[Close]
BLAST of Cp4.1LG03g12790.1 vs. NCBI nr
Match: gi|778690009|ref|XP_011653051.1| (PREDICTED: uncharacterized protein LOC105435170 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 62/110 (56.36%), Postives = 66/110 (60.00%), Query Frame = 1 

Query: 1   MEISSITADQSDGSNSSFEQVAEE---------------------TTSDGDSKLIPDGEF 60
           MEISS+TADQ    NSS EQVAE                           DSKLIPDGEF
Sbjct: 31  MEISSLTADQIHAYNSSDEQVAEIRLFLDSNNRWNFLNSSPAFLLNLEREDSKLIPDGEF 90

Query: 61  DFDWFRFCFPSPSFRSGFDFGVKLAGFVAIEDVDGE---EPLFWPLVHKI 87
           DFDWF+  FPSPSFRSGF+F VKLA   AIED DGE    PLFWPL H+I
Sbjct: 91  DFDWFQSNFPSPSFRSGFNFEVKLA---AIEDADGEIRDGPLFWPLEHEI 137

[Close]
BLAST of Cp4.1LG03g12790.1 vs. NCBI nr
Match: gi|700197912|gb|KGN53070.1| (hypothetical protein Csa_4G015110 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 62/110 (56.36%), Postives = 66/110 (60.00%), Query Frame = 1 

Query: 1   MEISSITADQSDGSNSSFEQVAEE---------------------TTSDGDSKLIPDGEF 60
           MEISS+TADQ    NSS EQVAE                           DSKLIPDGEF
Sbjct: 1   MEISSLTADQIHAYNSSDEQVAEIRLFLDSNNRWNFLNSSPAFLLNLEREDSKLIPDGEF 60

Query: 61  DFDWFRFCFPSPSFRSGFDFGVKLAGFVAIEDVDGE---EPLFWPLVHKI 87
           DFDWF+  FPSPSFRSGF+F VKLA   AIED DGE    PLFWPL H+I
Sbjct: 61  DFDWFQSNFPSPSFRSGFNFEVKLA---AIEDADGEIRDGPLFWPLEHEI 107

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g12790.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g12790.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTY2_CUCSA1.4e-1756.36Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015110 PE=4 SV=1[more]
BLAST of Cp4.1LG03g12790.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g12790.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778690009|ref|XP_011653051.1|1.9e-1756.36PREDICTED: uncharacterized protein LOC105435170 [Cucumis sativus][more]
gi|700197912|gb|KGN53070.1|1.9e-1756.36hypothetical protein Csa_4G015110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG03g12790Cp4.1LG03g12790gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG03g12790.1:cds:002Cp4.1LG03g12790.1:cds:002CDS
Cp4.1LG03g12790.1:cds:001Cp4.1LG03g12790.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG03g12790.1Cp4.1LG03g12790.1-proteinpolypeptide