CmoCh14G015060 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G015060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr14 : 12083986 .. 12084414 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCTCTTCCATTACCGCCGATCAGAGTGATGGCTCCAATAGTTCCTTTGAACAAGTTGCAGAGGAGACCACCTCTGATGGAGGTGAATCAATGCGGCTATCTTTAGATTCCCCGTCGTCTTCTCCGCTTCTGTTTTTTCGAGAGCCGCTGGAGTCTTGTGAACTCATTTCCTGCCTTCTTGTTGTCTTTGCTGAATCTTCAGATTCAAAGCTGATTCCGGATGGAGAGTTCGATTTCGATTGGTTACGGTTTTGTTTTCCGAGTCCGTCATTTCGGAGCGGTTTCGATTTCGGAGTGAAATTAGCAGGATTTGTTGCAATCGAAGATGTTGACGGTGAAGAACCGTTGTTCTGGCCGCTCGTACATAAAATCGATGAAGGATTGGGACTGGTTTTCGATTTCACCACGGGAAAAGGAGTTTAA

mRNA sequence

ATGGAAATCTCTTCCATTACCGCCGATCAGAGTGATGGCTCCAATAGTTCCTTTGAACAAGTTGCAGAGGAGACCACCTCTGATGGAGATTCAAAGCTGATTCCGGATGGAGAGTTCGATTTCGATTGGTTACGGTTTTGTTTTCCGAGTCCGTCATTTCGGAGCGGTTTCGATTTCGGAGTGAAATTAGCAGGATTTGTTGCAATCGAAGATGTTGACGGTGAAGAACCGTTGTTCTGGCCGCTCGTACATAAAATCGATGAAGGATTGGGACTGGTTTTCGATTTCACCACGGGAAAAGGAGTTTAA

Coding sequence (CDS)

ATGGAAATCTCTTCCATTACCGCCGATCAGAGTGATGGCTCCAATAGTTCCTTTGAACAAGTTGCAGAGGAGACCACCTCTGATGGAGATTCAAAGCTGATTCCGGATGGAGAGTTCGATTTCGATTGGTTACGGTTTTGTTTTCCGAGTCCGTCATTTCGGAGCGGTTTCGATTTCGGAGTGAAATTAGCAGGATTTGTTGCAATCGAAGATGTTGACGGTGAAGAACCGTTGTTCTGGCCGCTCGTACATAAAATCGATGAAGGATTGGGACTGGTTTTCGATTTCACCACGGGAAAAGGAGTTTAA

Homology

[Close]

BLAST of CmoCh14G015060 vs. TrEMBL
Match: A0A0A0KTY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015110 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-17
Identity = 61/110 (55.45%), Postives = 65/110 (59.09%), Query Frame = 1


Query: 1   MEISSITADQSDGSNSSFEQVAEE---------------------TTSDGDSKLIPDGEF 60
           MEISS+TADQ    NSS EQVAE                           DSKLIPDGEF
Sbjct: 1   MEISSLTADQIHAYNSSDEQVAEIRLFLDSNNRWNFLNSSPAFLLNLEREDSKLIPDGEF 60

Query: 61  DFDWLRFCFPSPSFRSGFDFGVKLAGFVAIEDVDGE---EPLFWPLVHKI 87
           DFDW +  FPSPSFRSGF+F VKLA   AIED DGE    PLFWPL H+I
Sbjct: 61  DFDWFQSNFPSPSFRSGFNFEVKLA---AIEDADGEIRDGPLFWPLEHEI 107

[Close]

BLAST of CmoCh14G015060 vs. NCBI nr
Match: gi|778690009|ref|XP_011653051.1| (PREDICTED: uncharacterized protein LOC105435170 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-17
Identity = 61/110 (55.45%), Postives = 65/110 (59.09%), Query Frame = 1


Query: 1   MEISSITADQSDGSNSSFEQVAEE---------------------TTSDGDSKLIPDGEF 60
           MEISS+TADQ    NSS EQVAE                           DSKLIPDGEF
Sbjct: 31  MEISSLTADQIHAYNSSDEQVAEIRLFLDSNNRWNFLNSSPAFLLNLEREDSKLIPDGEF 90

Query: 61  DFDWLRFCFPSPSFRSGFDFGVKLAGFVAIEDVDGE---EPLFWPLVHKI 87
           DFDW +  FPSPSFRSGF+F VKLA   AIED DGE    PLFWPL H+I
Sbjct: 91  DFDWFQSNFPSPSFRSGFNFEVKLA---AIEDADGEIRDGPLFWPLEHEI 137

[Close]

BLAST of CmoCh14G015060 vs. NCBI nr
Match: gi|700197912|gb|KGN53070.1| (hypothetical protein Csa_4G015110 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-17
Identity = 61/110 (55.45%), Postives = 65/110 (59.09%), Query Frame = 1


Query: 1   MEISSITADQSDGSNSSFEQVAEE---------------------TTSDGDSKLIPDGEF 60
           MEISS+TADQ    NSS EQVAE                           DSKLIPDGEF
Sbjct: 1   MEISSLTADQIHAYNSSDEQVAEIRLFLDSNNRWNFLNSSPAFLLNLEREDSKLIPDGEF 60

Query: 61  DFDWLRFCFPSPSFRSGFDFGVKLAGFVAIEDVDGE---EPLFWPLVHKI 87
           DFDW +  FPSPSFRSGF+F VKLA   AIED DGE    PLFWPL H+I
Sbjct: 61  DFDWFQSNFPSPSFRSGFNFEVKLA---AIEDADGEIRDGPLFWPLEHEI 107

The following BLAST results are available for this feature:

BLAST of CmoCh14G015060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G015060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTY2_CUCSA	3.0e-17	55.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015110 PE=4 SV=1	[more]

BLAST of CmoCh14G015060 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh14G015060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778690009\|ref\|XP_011653051.1\|	4.3e-17	55.45	PREDICTED: uncharacterized protein LOC105435170 [Cucumis sativus]	[more]
gi\|700197912\|gb\|KGN53070.1\|	4.3e-17	55.45	hypothetical protein Csa_4G015110 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G015060.1	CmoCh14G015060.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G015060	Cucsa.094870	Cucumber (Gy14) v1	cgycmoB0186
CmoCh14G015060	Cla010853	Watermelon (97103) v1	cmowmB222
CmoCh14G015060	Csa4G015110	Cucumber (Chinese Long) v2	cmocuB245
CmoCh14G015060	MELO3C017723	Melon (DHL92) v3.5.1	cmomeB232
CmoCh14G015060	ClCG07G015580	Watermelon (Charleston Gray)	cmowcgB226
CmoCh14G015060	CSPI04G03290	Wild cucumber (PI 183967)	cmocpiB250
CmoCh14G015060	Lsi07G000390	Bottle gourd (USVL1VR-Ls)	cmolsiB242
CmoCh14G015060	Cp4.1LG03g12790	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G015060	MELO3C017723.2	Melon (DHL92) v3.6.1	cmomedB264
CmoCh14G015060	CsaV3_4G003270	Cucumber (Chinese Long) v3	cmocucB0291
CmoCh14G015060	Cla97C07G142590	Watermelon (97103) v2	cmowmbB252
CmoCh14G015060	Bhi01G002171	Wax gourd	cmowgoB0311
CmoCh14G015060	CsGy4G003170	Cucumber (Gy14) v2	cgybcmoB455
CmoCh14G015060	Carg27249	Silver-seed gourd	carcmoB0535

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G015060	Silver-seed gourd	carcmoB0946
CmoCh14G015060	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh14G015060	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G015060	Cucurbita maxima (Rimu)	cmacmoB797
CmoCh14G015060	Cucurbita pepo (Zucchini)	cmocpeB254