Cp4.1LG03g08450 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g08450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG03 : 2706623 .. 2707499 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGACTTTAGTAAAAGGCAATAAACCAGAGTGGTTTTTTCTGACCTTTTTGTTTGGTTTGTTTATATAAATGTTCTCCCACATCGGTTTTCTTGCCAAACTGCTACCTATCCATCCCTTTATATACAGAGATCTTTTCTGTTTGTTTCCCGAGAAAACATGGGTCAGAAAATTTTCCTCTCCCTCCGGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCTGTTCCCACCACAAGTAAGTAAACCCTTTCTCTCTCATAATTCACTCCAATTTTCATCTTTCTCTCTCCTTTTTTTTTTTTAATGAATTTGTGGTTTTTTTTAGGGATTTTCAAATCGACTTTCGATCAGCCATCTGCGCAAGATTTTGTTTTTCAGGTTTTTTTTTTTCTCGAGAAAGTTATTTACTTTTCTGGGAAATTTTCTCGGCAACCAAACAGGTATGATTGAGAAATTGAATTGTGTTTTGATCTATAATTTTTGTAGGATGTGAGAGATTTGGAGTTCAACGGTGGAGATTTATTTGGAAGATTGGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAACACTCCGGCGAAGCCATAACTTTATTTATTTATTTTCTTAACCAAAAATTAGAAGTAAAAGGGTTAGTATTTGAAGAAATGCTCACTTTTTTTTAATAGATATAAACTTGGGTAAATTATAAAAAAGAAAGGGCAATTCTGTCTTTTCACTCCGATGCTTTTAGTCTACTAATAACAGTATTTGATTGGACTTTTTTCCTTTTGTAATATATTATAAGTTTATTGGTTTAATTATTGTCTATCCTATTTATTTATTATTATTATTAATT

mRNA sequence

GTTGACTTTAGTAAAAGGCAATAAACCAGAGTGGTTTTTTCTGACCTTTTTGTTTGGTTTGTTTATATAAATGTTCTCCCACATCGGTTTTCTTGCCAAACTGCTACCTATCCATCCCTTTATATACAGAGATCTTTTCTGTTTGTTTCCCGAGAAAACATGGGTCAGAAAATTTTCCTCTCCCTCCGGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCTGTTCCCACCACAAGGATTTTCAAATCGACTTTCGATCAGCCATCTGCGCAAGATTTTGTTTTTCAGGATGTGAGAGATTTGGAGTTCAACGGTGGAGATTTATTTGGAAGATTGGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAACACTCCGGCGAAGCCATAACTTTATTTATTTATTTTCTTAACCAAAAATTAGAAGTAAAAGGGTTAGTATTTGAAGAAATGCTCACTTTTTTTTAATAGATATAAACTTGGGTAAATTATAAAAAAGAAAGGGCAATTCTGTCTTTTCACTCCGATGCTTTTAGTCTACTAATAACAGTATTTGATTGGACTTTTTTCCTTTTGTAATATATTATAAGTTTATTGGTTTAATTATTGTCTATCCTATTTATTTATTATTATTATTAATT

Coding sequence (CDS)

ATGGGTCAGAAAATTTTCCTCTCCCTCCGGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCTGTTCCCACCACAAGGATTTTCAAATCGACTTTCGATCAGCCATCTGCGCAAGATTTTGTTTTTCAGGATGTGAGAGATTTGGAGTTCAACGGTGGAGATTTATTTGGAAGATTGGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAACACTCCGGCGAAGCCATAA

Protein sequence

MGQKIFLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGDLFGRLVLENNDYPGTGANNHHDPNTPAKP

Homology

[Close]

BLAST of Cp4.1LG03g08450 vs. TrEMBL
Match: A0A0A0LHJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822320 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.7e-22
Identity = 65/97 (67.01%), Postives = 69/97 (71.13%), Query Frame = 1


Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSS---VAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFN 60
          MGQKIF       LLFL FS LLSS   +AVPTTRI KSTFD PS Q  V QDVRD+E  
Sbjct: 1  MGQKIFT----FFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEII 60

Query: 61 GGDLF-----GRLVLENNDYPGTGANNHHDPNTPAKP 90
           GD F     GRL+LENNDYPGTGANNHHDP +PAKP
Sbjct: 61 DGDSFERLFEGRLILENNDYPGTGANNHHDPKSPAKP 93

[Close]

BLAST of Cp4.1LG03g08450 vs. TrEMBL
Match: B9SI56_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1320880 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-14
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 12 LLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSA--QDF-VFQDVRDLEFNGGDL----FGR 71
          LLL FLGFS LLSS+AVPTTR  KST D PS+  QDF + Q+  DL   G +L     GR
Sbjct: 10 LLLFFLGFSFLLSSLAVPTTRSLKSTEDNPSSSVQDFLIHQEGMDLSSQGEELDFIIAGR 69

Query: 72 LVLENNDYPGTGANNHHDPNTPAK 89
          + LE+ DYPGTGANNHHDP TP +
Sbjct: 70 MDLESTDYPGTGANNHHDPKTPGR 93

[Close]

BLAST of Cp4.1LG03g08450 vs. TrEMBL
Match: A0A0D2QZ05_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G253600 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 1


Query: 11 RLLLLFLGFS-LLLSSVAVPTTRIFKSTFDQPSA-QDFVFQDVRDLE-----FNGGDLFG 70
          RL+LLFLGFS LLLS  AVPTTR  KS  + PS+ QD + QDV +L         GD F 
Sbjct: 8  RLMLLFLGFSYLLLSCAAVPTTRSLKSNKELPSSVQDLLAQDVMELSDGEEVITEGDGFN 67

Query: 71 --RLVLENNDYPGTGANNHHDPNTPAK 89
            R+++E+ DYPGTGAN +HDP TP +
Sbjct: 68 GERMLMESTDYPGTGANKNHDPKTPGR 94

[Close]

BLAST of Cp4.1LG03g08450 vs. TrEMBL
Match: A0A0B0PRK9_GOSAR (Calcium-transporting ATPase 9, plasma membrane-type-like protein OS=Gossypium arboreum GN=F383_01137 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 11 RLLLLFLGFS-LLLSSVAVPTTRIFKSTFDQPSA-QDFVFQDVRDLEFNG-----GDLFG 70
          RL+LLFLGFS LLLS  AVP+TR  KS  + PS+ QD + QDV +L +       GD F 
Sbjct: 8  RLMLLFLGFSYLLLSCAAVPSTRSLKSNKELPSSVQDLLAQDVMELSYGEEVIAEGDGFN 67

Query: 71 --RLVLENNDYPGTGANNHHDPNTPAK 89
            R+++E+ DYPGTGAN +HDP TP +
Sbjct: 68 GERMLMESTDYPGTGANKNHDPKTPGR 94

[Close]

BLAST of Cp4.1LG03g08450 vs. TrEMBL
Match: V4VU77_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022756mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-10
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 11  RLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRD-------LEFNGGDLFG 70
           +LL+LFLG S +LSS AVP TR+ KS  D    Q+ + Q+  +       L    G + G
Sbjct: 56  KLLVLFLGLSFVLSSTAVPATRMAKSDNDPVQVQELLAQEAMEVSDSEEVLGMEQGYIEG 115

Query: 71  RLVLENNDYPGTGANNHHDPNTPAK 89
           R+ +E+ DYPGTGANNHHDP TP +
Sbjct: 116 RMDMESTDYPGTGANNHHDPKTPGR 140

[Close]

BLAST of Cp4.1LG03g08450 vs. NCBI nr
Match: gi|700204348|gb|KGN59481.1| (hypothetical protein Csa_3G822320 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 6.7e-22
Identity = 65/97 (67.01%), Postives = 69/97 (71.13%), Query Frame = 1


Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSS---VAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFN 60
          MGQKIF       LLFL FS LLSS   +AVPTTRI KSTFD PS Q  V QDVRD+E  
Sbjct: 1  MGQKIFT----FFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEII 60

Query: 61 GGDLF-----GRLVLENNDYPGTGANNHHDPNTPAKP 90
           GD F     GRL+LENNDYPGTGANNHHDP +PAKP
Sbjct: 61 DGDSFERLFEGRLILENNDYPGTGANNHHDPKSPAKP 93

[Close]

BLAST of Cp4.1LG03g08450 vs. NCBI nr
Match: gi|802585324|ref|XP_012070364.1| (PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas])

HSP 1 Score: 88.6 bits (218), Expect = 6.1e-15
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 6  FLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSA--QDFVFQDV----RDLEFNGG 65
          FLS  R+LLLFLGFS ++SS+AVPTTR  KST + PS+  QD + QD+      L+   G
Sbjct: 3  FLS-SRILLLFLGFSFVISSLAVPTTRSLKSTRENPSSSVQDLLTQDLDFGEEQLDLIEG 62

Query: 66 DLFGRLVLENNDYPGTGANNHHDPNTPAK 89
          D+ GR+ LE+ DYPGTGANNHHDP TP +
Sbjct: 63 DMNGRMDLESQDYPGTGANNHHDPKTPGR 90

[Close]

BLAST of Cp4.1LG03g08450 vs. NCBI nr
Match: gi|255569416|ref|XP_002525675.1| (PREDICTED: uncharacterized protein LOC8286483 [Ricinus communis])

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 12 LLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSA--QDF-VFQDVRDLEFNGGDL----FGR 71
          LLL FLGFS LLSS+AVPTTR  KST D PS+  QDF + Q+  DL   G +L     GR
Sbjct: 10 LLLFFLGFSFLLSSLAVPTTRSLKSTEDNPSSSVQDFLIHQEGMDLSSQGEELDFIIAGR 69

Query: 72 LVLENNDYPGTGANNHHDPNTPAK 89
          + LE+ DYPGTGANNHHDP TP +
Sbjct: 70 MDLESTDYPGTGANNHHDPKTPGR 93

[Close]

BLAST of Cp4.1LG03g08450 vs. NCBI nr
Match: gi|1009173335|ref|XP_015867762.1| (PREDICTED: uncharacterized protein LOC107405246 [Ziziphus jujuba])

HSP 1 Score: 78.2 bits (191), Expect = 8.2e-12
Identity = 51/98 (52.04%), Postives = 62/98 (63.27%), Query Frame = 1


Query: 1  MGQKIFLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTF-DQPSAQDFVFQDVRDLEFNGG 60
          M QK+ L+L  L+LL LGFS  L S A+PTTR+ KST  D  S Q  + Q    LE +G 
Sbjct: 1  MVQKLLLTLL-LVLLLLGFSNHLYSSAIPTTRVLKSTMEDSSSPQSLLVQSEVQLE-DGE 60

Query: 61 DLF---------GRLVLENNDYPGTGANNHHDPNTPAK 89
          +LF         GR+V+EN DYPGTGANNHHDP TP +
Sbjct: 61 ELFEVGEEGFYEGRMVMENTDYPGTGANNHHDPRTPGR 96

[Close]

BLAST of Cp4.1LG03g08450 vs. NCBI nr
Match: gi|823194841|ref|XP_012492439.1| (PREDICTED: uncharacterized protein LOC105804387 [Gossypium raimondii])

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 1


Query: 11 RLLLLFLGFS-LLLSSVAVPTTRIFKSTFDQPSA-QDFVFQDVRDLE-----FNGGDLFG 70
          RL+LLFLGFS LLLS  AVPTTR  KS  + PS+ QD + QDV +L         GD F 
Sbjct: 8  RLMLLFLGFSYLLLSCAAVPTTRSLKSNKELPSSVQDLLAQDVMELSDGEEVITEGDGFN 67

Query: 71 --RLVLENNDYPGTGANNHHDPNTPAK 89
            R+++E+ DYPGTGAN +HDP TP +
Sbjct: 68 GERMLMESTDYPGTGANKNHDPKTPGR 94

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g08450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g08450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ0_CUCSA	4.7e-22	67.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822320 PE=4 SV=1	[more]
B9SI56_RICCO	2.1e-14	60.71	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1320880 PE=4 SV=1	[more]
A0A0D2QZ05_GOSRA	1.1e-10	54.02	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G253600 PE=4 SV=1	[more]
A0A0B0PRK9_GOSAR	1.4e-10	52.87	Calcium-transporting ATPase 9, plasma membrane-type-like protein OS=Gossypium ar...	[more]
V4VU77_9ROSI	1.8e-10	47.06	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022756mg PE=4 SV=1	[more]

BLAST of Cp4.1LG03g08450 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g08450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204348\|gb\|KGN59481.1\|	6.7e-22	67.01	hypothetical protein Csa_3G822320 [Cucumis sativus]	[more]
gi\|802585324\|ref\|XP_012070364.1\|	6.1e-15	57.30	PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]	[more]
gi\|255569416\|ref\|XP_002525675.1\|	3.0e-14	60.71	PREDICTED: uncharacterized protein LOC8286483 [Ricinus communis]	[more]
gi\|1009173335\|ref\|XP_015867762.1\|	8.2e-12	52.04	PREDICTED: uncharacterized protein LOC107405246 [Ziziphus jujuba]	[more]
gi\|823194841\|ref\|XP_012492439.1\|	1.5e-10	54.02	PREDICTED: uncharacterized protein LOC105804387 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g08450.1	Cp4.1LG03g08450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33474	FAMILY NOT NAMED	coord: 1..89 score: 2.4
None	No IPR available	PANTHER	PTHR33474:SF2	SUBFAMILY NOT NAMED	coord: 1..89 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g08450	CmaCh06G009050	Cucurbita maxima (Rimu)	cmacpeB841
Cp4.1LG03g08450	CmaCh14G005340	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g08450	CmoCh14G005350	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g08450	CmoCh06G009320	Cucurbita moschata (Rifu)	cmocpeB789
Cp4.1LG03g08450	Cla002908	Watermelon (97103) v1	cpewmB597
Cp4.1LG03g08450	Csa3G822320	Cucumber (Chinese Long) v2	cpecuB597
Cp4.1LG03g08450	ClCG10G015920	Watermelon (Charleston Gray)	cpewcgB546
Cp4.1LG03g08450	CSPI03G38150	Wild cucumber (PI 183967)	cpecpiB599
Cp4.1LG03g08450	Lsi03G015760	Bottle gourd (USVL1VR-Ls)	cpelsiB503
Cp4.1LG03g08450	CsaV3_3G040570	Cucumber (Chinese Long) v3	cpecucB0747
Cp4.1LG03g08450	Bhi11G002371	Wax gourd	cpewgoB0743
Cp4.1LG03g08450	CsGy3G035620	Cucumber (Gy14) v2	cgybcpeB395
Cp4.1LG03g08450	Carg26089	Silver-seed gourd	carcpeB0444
Cp4.1LG03g08450	Carg03468	Silver-seed gourd	carcpeB0353

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g08450	Cucurbita pepo (Zucchini)	cpecpeB486
Cp4.1LG03g08450	Cucumber (Gy14) v1	cgycpeB0888
Cp4.1LG03g08450	Cucurbita maxima (Rimu)	cmacpeB682
Cp4.1LG03g08450	Bottle gourd (USVL1VR-Ls)	cpelsiB489
Cp4.1LG03g08450	Melon (DHL92) v3.6.1	cpemedB679
Cp4.1LG03g08450	Melon (DHL92) v3.5.1	cpemeB572