CmoCh06G009320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G009320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Calcium-transporting ATPase 9, plasma membrane-type-like protein
Location	Cmo_Chr06 : 6802890 .. 6803843 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGATATAAAATTTAGAATTAAAAAATGTATTATAAATTTGTTAAAAAAAAATTGGTGACTAAAGTTGAGTTGTGGAAAGAGAGGTGTGGTTTTAATTATTTTTGAAATTGCAAAAAAATATAGAGGTTTTTTTTTTCCTATAAATCATCTCACTCACATGGGTCTTACTTGCAAAACCACCGTCCTTCCCCTTCTCTGTTTGTTTCCCGAGAAAGAGAGAAAGAAAAAGAGGAAAGAAAATGGGTCACAAACCTCTCCTCCCCCTCACCTTCCTTCTTCTCTTTCTGGCTTTCGCCTTTCTCATCTCTTCCACCGCTGTTCCCACCACAAGTAAGTAACTCCCCTTTTTTCTTTCACTTTCTACTGATTTTCCCTAATCAATCTCTGAATTTTCTTGTCTTCCAGGAGTCCTCCAATCAAATTTTGATGACCCATCTGCCCAACCTTCCGTTTTCCAGGTCTCTCTCTGTTTTTTCTCGAGAAAATTTCAAATAATTTTCTCAGCATCCAAACAGGTGTGATTGAGAAATTGAAGCGTGTTTTGTTGTACAAATTTTGTAGGATTGGAGAGATTTGGAGATAAGCGGTGAAGATTCGCTTGAATTTGTTGCGGAAAGATTGTCTGAAGGAAGAGTGGTTTTGGAGAACAACGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCTCCTGCTACCAAACCATAGTTAATTTTCCTTCTGTTTATTACATATGCATTACCAAATTCTAGAAATGGAAGAACTTGTTTGGAGTTTTTTGTTCGTAATATACTTGTAGTTCTAATAAATGAACTTTAAGATGTAATATATTTTTAATTAAAAAAATTGATAACTTATATTTTGTAAATGAATTTGAGTCTAAATTTTAAGATATTATTTTGATGGTCGGTCTGTGTCACTTCCCATTAACATATTCATTCTGGTG

mRNA sequence

CTGGATATAAAATTTAGAATTAAAAAATGTATTATAAATTTGTTAAAAAAAAATTGGTGACTAAAGTTGAGTTGTGGAAAGAGAGGTGTGGTTTTAATTATTTTTGAAATTGCAAAAAAATATAGAGGTTTTTTTTTTCCTATAAATCATCTCACTCACATGGGTCTTACTTGCAAAACCACCGTCCTTCCCCTTCTCTGTTTGTTTCCCGAGAAAGAGAGAAAGAAAAAGAGGAAAGAAAATGGGTCACAAACCTCTCCTCCCCCTCACCTTCCTTCTTCTCTTTCTGGCTTTCGCCTTTCTCATCTCTTCCACCGCTGTTCCCACCACAAGAGTCCTCCAATCAAATTTTGATGACCCATCTGCCCAACCTTCCGTTTTCCAGGATTGGAGAGATTTGGAGATAAGCGGTGAAGATTCGCTTGAATTTGTTGCGGAAAGATTGTCTGAAGGAAGAGTGGTTTTGGAGAACAACGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCTCCTGCTACCAAACCATAGTTAATTTTCCTTCTGTTTATTACATATGCATTACCAAATTCTAGAAATGGAAGAACTTGTTTGGAGTTTTTTGTTCGTAATATACTTGTAGTTCTAATAAATGAACTTTAAGATGTAATATATTTTTAATTAAAAAAATTGATAACTTATATTTTGTAAATGAATTTGAGTCTAAATTTTAAGATATTATTTTGATGGTCGGTCTGTGTCACTTCCCATTAACATATTCATTCTGGTG

Coding sequence (CDS)

ATGGGTCACAAACCTCTCCTCCCCCTCACCTTCCTTCTTCTCTTTCTGGCTTTCGCCTTTCTCATCTCTTCCACCGCTGTTCCCACCACAAGAGTCCTCCAATCAAATTTTGATGACCCATCTGCCCAACCTTCCGTTTTCCAGGATTGGAGAGATTTGGAGATAAGCGGTGAAGATTCGCTTGAATTTGTTGCGGAAAGATTGTCTGAAGGAAGAGTGGTTTTGGAGAACAACGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCTCCTGCTACCAAACCATAG

Homology

[Close]

BLAST of CmoCh06G009320 vs. TrEMBL
Match: A0A0A0LHJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822320 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-21
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 1


Query: 10 TFLLLFLAFAFLISST---AVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVAE 69
          TF LLFLAF+FL+SS    AVPTTR+L+S FD PS Q  V QD RD+EI   DS E    
Sbjct: 7  TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIIDGDSFE---- 66

Query: 70 RLSEGRVVLENNDYPGTGANNHHDPKSPA 96
          RL EGR++LENNDYPGTGANNHHDPKSPA
Sbjct: 67 RLFEGRLILENNDYPGTGANNHHDPKSPA 91

[Close]

BLAST of CmoCh06G009320 vs. TrEMBL
Match: B9SI56_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1320880 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-12
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 1


Query: 12 LLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVF---QDWRDLEISGEDSLEFVAERL 71
          LL FL F+FL+SS AVPTTR L+S  D+PS+    F   Q+  DL   GE+ L+F+    
Sbjct: 11 LLFFLGFSFLLSSLAVPTTRSLKSTEDNPSSSVQDFLIHQEGMDLSSQGEE-LDFIIA-- 70

Query: 72 SEGRVVLENNDYPGTGANNHHDPKSP 95
            GR+ LE+ DYPGTGANNHHDPK+P
Sbjct: 71 --GRMDLESTDYPGTGANNHHDPKTP 91

[Close]

BLAST of CmoCh06G009320 vs. TrEMBL
Match: A0A059DGS7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02145 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.3e-12
Identity = 42/96 (43.75%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 2   GHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQ---PSVFQDWRDLEISGE 61
           GHKP++ +  L+LFL F+ L+SS AVP+TR L+S+ ++   +   P++      + +SG 
Sbjct: 31  GHKPIIAMRLLVLFLGFSCLLSSLAVPSTRSLKSSSEEDDGELSVPNLLAQDEIMGMSGG 90

Query: 62  DSLEFVAERLSEGRVVLENNDYPGTGANNHHDPKSP 95
             + F+     E R+ +E+NDYPGTGANNHHDPK+P
Sbjct: 91  GEMVFM-----ERRMEMESNDYPGTGANNHHDPKTP 121

[Close]

BLAST of CmoCh06G009320 vs. TrEMBL
Match: A0A067DCK9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034425mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.1e-11
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 1


Query: 9  LTFLLLFLAFAFLISSTAVPTTRVLQSNFDDP-SAQPSVFQDWRDLEISGEDSLEFVAER 68
          L  L+LFL F+F++SSTAVP TR+ +S+ ++P   Q  + Q+   +E+S  + L  + + 
Sbjct: 7  LKLLVLFLGFSFVLSSTAVPATRMAKSDNENPIQVQELLAQE--AMEVSDSEELLGMEQG 66

Query: 69 LSEGRVVLENNDYPGTGANNHHDPKSP 95
            EGR+ +E+ DYPGTGANNHHDPK+P
Sbjct: 67 YIEGRMDMESTDYPGTGANNHHDPKTP 91

[Close]

BLAST of CmoCh06G009320 vs. TrEMBL
Match: V4VU77_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022756mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-10
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 9   LTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVAERL 68
           L  L+LFL  +F++SSTAVP TR+ +S+ D    Q  + Q+   +E+S  + +  + +  
Sbjct: 55  LKLLVLFLGLSFVLSSTAVPATRMAKSDNDPVQVQELLAQE--AMEVSDSEEVLGMEQGY 114

Query: 69  SEGRVVLENNDYPGTGANNHHDPKSP 95
            EGR+ +E+ DYPGTGANNHHDPK+P
Sbjct: 115 IEGRMDMESTDYPGTGANNHHDPKTP 138

[Close]

BLAST of CmoCh06G009320 vs. NCBI nr
Match: gi|700204348|gb|KGN59481.1| (hypothetical protein Csa_3G822320 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 2.8e-21
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 1


Query: 10 TFLLLFLAFAFLISST---AVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVAE 69
          TF LLFLAF+FL+SS    AVPTTR+L+S FD PS Q  V QD RD+EI   DS E    
Sbjct: 7  TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIIDGDSFE---- 66

Query: 70 RLSEGRVVLENNDYPGTGANNHHDPKSPA 96
          RL EGR++LENNDYPGTGANNHHDPKSPA
Sbjct: 67 RLFEGRLILENNDYPGTGANNHHDPKSPA 91

[Close]

BLAST of CmoCh06G009320 vs. NCBI nr
Match: gi|1009173335|ref|XP_015867762.1| (PREDICTED: uncharacterized protein LOC107405246 [Ziziphus jujuba])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1


Query: 1  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDS 60
          M  K LL L  +LL L F+  + S+A+PTTRVL+S  +D S+  S+          GE+ 
Sbjct: 1  MVQKLLLTLLLVLLLLGFSNHLYSSAIPTTRVLKSTMEDSSSPQSLLVQSEVQLEDGEEL 60

Query: 61 LEFVAERLSEGRVVLENNDYPGTGANNHHDPKSP 95
           E   E   EGR+V+EN DYPGTGANNHHDP++P
Sbjct: 61 FEVGEEGFYEGRMVMENTDYPGTGANNHHDPRTP 94

[Close]

BLAST of CmoCh06G009320 vs. NCBI nr
Match: gi|255569416|ref|XP_002525675.1| (PREDICTED: uncharacterized protein LOC8286483 [Ricinus communis])

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-12
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 1


Query: 12 LLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVF---QDWRDLEISGEDSLEFVAERL 71
          LL FL F+FL+SS AVPTTR L+S  D+PS+    F   Q+  DL   GE+ L+F+    
Sbjct: 11 LLFFLGFSFLLSSLAVPTTRSLKSTEDNPSSSVQDFLIHQEGMDLSSQGEE-LDFIIA-- 70

Query: 72 SEGRVVLENNDYPGTGANNHHDPKSP 95
            GR+ LE+ DYPGTGANNHHDPK+P
Sbjct: 71 --GRMDLESTDYPGTGANNHHDPKTP 91

[Close]

BLAST of CmoCh06G009320 vs. NCBI nr
Match: gi|702246528|ref|XP_010055020.1| (PREDICTED: uncharacterized protein LOC104443364 [Eucalyptus grandis])

HSP 1 Score: 78.2 bits (191), Expect = 9.0e-12
Identity = 42/96 (43.75%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 2   GHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQ---PSVFQDWRDLEISGE 61
           GHKP++ +  L+LFL F+ L+SS AVP+TR L+S+ ++   +   P++      + +SG 
Sbjct: 31  GHKPIIAMRLLVLFLGFSCLLSSLAVPSTRSLKSSSEEDDGELSVPNLLAQDEIMGMSGG 90

Query: 62  DSLEFVAERLSEGRVVLENNDYPGTGANNHHDPKSP 95
             + F+     E R+ +E+NDYPGTGANNHHDPK+P
Sbjct: 91  GEMVFM-----ERRMEMESNDYPGTGANNHHDPKTP 121

[Close]

BLAST of CmoCh06G009320 vs. NCBI nr
Match: gi|802585324|ref|XP_012070364.1| (PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-11
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 12 LLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDW--RDLEISGEDSLEFVAERLS 71
          LLLFL F+F+ISS AVPTTR L+S  ++PS   S  QD   +DL+  GE+ L+ +   ++
Sbjct: 9  LLLFLGFSFVISSLAVPTTRSLKSTRENPS---SSVQDLLTQDLDF-GEEQLDLIEGDMN 68

Query: 72 EGRVVLENNDYPGTGANNHHDPKSP 95
           GR+ LE+ DYPGTGANNHHDPK+P
Sbjct: 69 -GRMDLESQDYPGTGANNHHDPKTP 88

The following BLAST results are available for this feature:

BLAST of CmoCh06G009320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G009320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ0_CUCSA	1.9e-21	68.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822320 PE=4 SV=1	[more]
B9SI56_RICCO	2.2e-12	54.65	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1320880 PE=4 SV=1	[more]
A0A059DGS7_EUCGR	6.3e-12	43.75	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02145 PE=4 SV=1	[more]
A0A067DCK9_CITSI	9.1e-11	47.13	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034425mg PE=4 SV=1	[more]
V4VU77_9ROSI	2.6e-10	45.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022756mg PE=4 SV=1	[more]

BLAST of CmoCh06G009320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh06G009320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204348\|gb\|KGN59481.1\|	2.8e-21	68.54	hypothetical protein Csa_3G822320 [Cucumis sativus]	[more]
gi\|1009173335\|ref\|XP_015867762.1\|	1.8e-12	47.87	PREDICTED: uncharacterized protein LOC107405246 [Ziziphus jujuba]	[more]
gi\|255569416\|ref\|XP_002525675.1\|	3.1e-12	54.65	PREDICTED: uncharacterized protein LOC8286483 [Ricinus communis]	[more]
gi\|702246528\|ref\|XP_010055020.1\|	9.0e-12	43.75	PREDICTED: uncharacterized protein LOC104443364 [Eucalyptus grandis]	[more]
gi\|802585324\|ref\|XP_012070364.1\|	2.0e-11	55.29	PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G009320.1	CmoCh06G009320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33474	FAMILY NOT NAMED	coord: 1..97 score: 1.7
None	No IPR available	PANTHER	PTHR33474:SF2	SUBFAMILY NOT NAMED	coord: 1..97 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G009320	CmaCh14G005340	Cucurbita maxima (Rimu)	cmacmoB274
CmoCh06G009320	CmaCh06G009050	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G009320	Cla002908	Watermelon (97103) v1	cmowmB780
CmoCh06G009320	Csa3G822320	Cucumber (Chinese Long) v2	cmocuB819
CmoCh06G009320	ClCG10G015920	Watermelon (Charleston Gray)	cmowcgB726
CmoCh06G009320	CSPI03G38150	Wild cucumber (PI 183967)	cmocpiB827
CmoCh06G009320	Lsi03G015760	Bottle gourd (USVL1VR-Ls)	cmolsiB745
CmoCh06G009320	Cp4.1LG03g08450	Cucurbita pepo (Zucchini)	cmocpeB789
CmoCh06G009320	CsaV3_3G040570	Cucumber (Chinese Long) v3	cmocucB0965
CmoCh06G009320	Cla97C10G198800	Watermelon (97103) v2	cmowmbB815
CmoCh06G009320	Bhi11G002371	Wax gourd	cmowgoB0991
CmoCh06G009320	CsGy3G035620	Cucumber (Gy14) v2	cgybcmoB413
CmoCh06G009320	Carg26089	Silver-seed gourd	carcmoB0438

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G009320	CmoCh14G005350	Cucurbita moschata (Rifu)	cmocmoB227

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G009320	Cucumber (Gy14) v1	cgycmoB0944
CmoCh06G009320	Melon (DHL92) v3.5.1	cmomeB745
CmoCh06G009320	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G009320	Melon (DHL92) v3.6.1	cmomedB847