Carg26089 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26089
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane channel-like protein
Location	Cucurbita_argyrosperma_scaffold_145 : 408735 .. 409413 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTTTCTGTTTGTTTCCCGAGAAAAAGAGAAAGAAAAAGAGGAAAGAAAATGGGTCACAAACCTCTCCTCCCCCTCACCTTCCTTCTTCTCTTTCTGGCTTTCGCCTTTCTCATTTCTTCCACCGCTGTTCCCACCACAAGTAAGTAACTCCCTTTTTTCTTTCACTTTCTACTGGTTTTCCCTAATCAATCTCTGAATTTTGTTGTCTTCCAGGAGTCCTCCAATCAAATTTTGATGACCCATCTGCCCAACCTTCCGTTTTCCAGGTCTCTCTCTGTTTTTTCTCGAGAAAATTTCAAATAATTTTCTCAGCATCCAAACAGGTGTGATTGAGAAATTGAAGCGTGTTTTGTCGTACAAATTTTGTAGGATTGGAGAGATTTGGAGATAAGCGGTGAAGATTCGCTTGAATTTGTTGACGAAAGATTGTCTGAAGGAAGAGTGGTTTTGGAGAACAACGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCTCCTGCTACCAAACCATAGTTAATTTTCCTTCTCTTTATTACATATGCATTACCAAATTCTAGAAATGGAAGAACTTGTTTGGAGTTTTTTTGGCTTAATTATTGTAGTTCTAATAAATGAACTTTAAGATGTAATATATTTTTAATTAAAAAAATTGATAACTTATATTTTGT

mRNA sequence

CCTTTTCTGTTTGTTTCCCGAGAAAAAGAGAAAGAAAAAGAGGAAAGAAAATGGGTCACAAACCTCTCCTCCCCCTCACCTTCCTTCTTCTCTTTCTGGCTTTCGCCTTTCTCATTTCTTCCACCGCTGTTCCCACCACAAGAGTCCTCCAATCAAATTTTGATGACCCATCTGCCCAACCTTCCGTTTTCCAGGATTGGAGAGATTTGGAGATAAGCGGTGAAGATTCGCTTGAATTTGTTGACGAAAGATTGTCTGAAGGAAGAGTGGTTTTGGAGAACAACGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCTCCTGCTACCAAACCATAGTTAATTTTCCTTCTCTTTATTACATATGCATTACCAAATTCTAGAAATGGAAGAACTTGTTTGGAGTTTTTTTGGCTTAATTATTGTAGTTCTAATAAATGAACTTTAAGATGTAATATATTTTTAATTAAAAAAATTGATAACTTATATTTTGT

Coding sequence (CDS)

ATGGGTCACAAACCTCTCCTCCCCCTCACCTTCCTTCTTCTCTTTCTGGCTTTCGCCTTTCTCATTTCTTCCACCGCTGTTCCCACCACAAGAGTCCTCCAATCAAATTTTGATGACCCATCTGCCCAACCTTCCGTTTTCCAGGATTGGAGAGATTTGGAGATAAGCGGTGAAGATTCGCTTGAATTTGTTGACGAAAGATTGTCTGAAGGAAGAGTGGTTTTGGAGAACAACGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCTCCTGCTACCAAACCATAG

Protein sequence

MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPATKP

Homology

[Close]

BLAST of Carg26089 vs. NCBI nr
Match: KGN59481.1 (hypothetical protein Csa_3G822320 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 5.4e-21
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 10 TFLLLFLAFAFLISST---AVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDE 69
          TF LLFLAF+FL+SS    AVPTTR+L+S FD PS Q  V QD RD+EI   DS     E
Sbjct: 7  TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIIDGDSF----E 66

Query: 70 RLSEGRVVLENNDYPGTGANNHHDPKSPA 96
          RL EGR++LENNDYPGTGANNHHDPKSPA
Sbjct: 67 RLFEGRLILENNDYPGTGANNHHDPKSPA 91

[Close]

BLAST of Carg26089 vs. NCBI nr
Match: PSS01686.1 (Protein Rev like [Actinidia chinensis var. chinensis])

HSP 1 Score: 86.7 bits (213), Expect = 4.9e-14
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDS 60
          M HK  LPL  L+LFL F+F++SS AVPT+R L+S  DDP  Q  +  D  ++++  +  
Sbjct: 1  MEHKGWLPL--LVLFLGFSFVLSSVAVPTSRSLKSFLDDPLVQDLLAPD-GEMDMGMDGE 60

Query: 61 LEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP 95
          L  V+E   +GR+ LENNDYPGTGANNHHDP +P
Sbjct: 61 LSNVEEFSMQGRMDLENNDYPGTGANNHHDPNAP 91

[Close]

BLAST of Carg26089 vs. NCBI nr
Match: OAY41877.1 (hypothetical protein MANES_09G136400 [Manihot esculenta])

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLL-FLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVF--QDWRDLEISG 60
          MGHK  L +TFLL+ F++F+F++ S AVP+TR L+S   +P A    F  QD  +L + G
Sbjct: 1  MGHKGFLSVTFLLIFFMSFSFVMISFAVPSTRSLESTEQNPPAVIQAFLPQDAMELNL-G 60

Query: 61 EDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP 95
          E+ +  ++E  S GR+ LE+ DYPGTGANNHHDPK P
Sbjct: 61 EEQVVDLEEGYSNGRMDLESTDYPGTGANNHHDPKPP 96

[Close]

BLAST of Carg26089 vs. NCBI nr
Match: XP_021667885.1 (uncharacterized protein LOC110655749 isoform X2 [Hevea brasiliensis])

HSP 1 Score: 83.2 bits (204), Expect = 5.4e-13
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 1   MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSA-QPSVFQDWRDLEISGED 60
           M HK  L +  LLLFL F+F++SS AVP+TR L+S  ++PS+ Q  + QD  DL +  E 
Sbjct: 37  MVHKGFLSVRLLLLFLGFSFVLSSLAVPSTRSLKSTEENPSSVQDFLTQDAMDLNLVEEQ 96

Query: 61  SLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP 95
            L+ + E    GR+ LE+ DYPGTGANNHHDPK+P
Sbjct: 97  VLD-LGEGYINGRMDLESTDYPGTGANNHHDPKTP 130

[Close]

BLAST of Carg26089 vs. NCBI nr
Match: XP_021621188.1 (uncharacterized protein LOC110621277 [Manihot esculenta] >OAY44460.1 hypothetical protein MANES_08G152200 [Manihot esculenta])

HSP 1 Score: 82.4 bits (202), Expect = 9.3e-13
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 1   MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSA-QPSVFQDWRDLEISGED 60
           M HK  L L  LLLFL F+F+ SS AVP+TR L+S  + PS+ + S+ QD   L +  E 
Sbjct: 23  MVHKCFLSLNLLLLFLGFSFVFSSLAVPSTRGLKSFEEIPSSVEDSLTQDAVGLNLGEEQ 82

Query: 61  SLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPAT 97
            ++F  E    GR+ LE+ DYPGTGANNHHDPK+P T
Sbjct: 83  VIDF-GEGYINGRMDLESTDYPGTGANNHHDPKTPGT 118

[Close]

BLAST of Carg26089 vs. TrEMBL
Match: tr|A0A0A0LHJ0|A0A0A0LHJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-21
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 10 TFLLLFLAFAFLISST---AVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDE 69
          TF LLFLAF+FL+SS    AVPTTR+L+S FD PS Q  V QD RD+EI   DS     E
Sbjct: 7  TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIIDGDSF----E 66

Query: 70 RLSEGRVVLENNDYPGTGANNHHDPKSPA 96
          RL EGR++LENNDYPGTGANNHHDPKSPA
Sbjct: 67 RLFEGRLILENNDYPGTGANNHHDPKSPA 91

[Close]

BLAST of Carg26089 vs. TrEMBL
Match: tr|A0A2R6Q481|A0A2R6Q481_ACTCH (Protein Rev like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23042 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDS 60
          M HK  LPL  L+LFL F+F++SS AVPT+R L+S  DDP  Q  +  D  ++++  +  
Sbjct: 1  MEHKGWLPL--LVLFLGFSFVLSSVAVPTSRSLKSFLDDPLVQDLLAPD-GEMDMGMDGE 60

Query: 61 LEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP 95
          L  V+E   +GR+ LENNDYPGTGANNHHDP +P
Sbjct: 61 LSNVEEFSMQGRMDLENNDYPGTGANNHHDPNAP 91

[Close]

BLAST of Carg26089 vs. TrEMBL
Match: tr|A0A2C9VAL3|A0A2C9VAL3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G136400 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-13
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLL-FLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVF--QDWRDLEISG 60
          MGHK  L +TFLL+ F++F+F++ S AVP+TR L+S   +P A    F  QD  +L + G
Sbjct: 1  MGHKGFLSVTFLLIFFMSFSFVMISFAVPSTRSLESTEQNPPAVIQAFLPQDAMELNL-G 60

Query: 61 EDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP 95
          E+ +  ++E  S GR+ LE+ DYPGTGANNHHDPK P
Sbjct: 61 EEQVVDLEEGYSNGRMDLESTDYPGTGANNHHDPKPP 96

[Close]

BLAST of Carg26089 vs. TrEMBL
Match: tr|A0A2C9VHT8|A0A2C9VHT8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G152200 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.1e-13
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 1   MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSA-QPSVFQDWRDLEISGED 60
           M HK  L L  LLLFL F+F+ SS AVP+TR L+S  + PS+ + S+ QD   L +  E 
Sbjct: 23  MVHKCFLSLNLLLLFLGFSFVFSSLAVPSTRGLKSFEEIPSSVEDSLTQDAVGLNLGEEQ 82

Query: 61  SLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPAT 97
            ++F  E    GR+ LE+ DYPGTGANNHHDPK+P T
Sbjct: 83  VIDF-GEGYINGRMDLESTDYPGTGANNHHDPKTPGT 118

[Close]

BLAST of Carg26089 vs. TrEMBL
Match: tr|A0A2P2KYL1|A0A2P2KYL1_RHIMU (Uncharacterized protein MANES_09G136400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.2e-12
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDP-SAQPSVFQDWRDLEISGED 60
          M HK LL L  ++LFL  + ++SS AVP TR L SN ++P SAQ  + QD  DL  +  D
Sbjct: 1  MVHKGLLGL--VMLFLVCSHVLSSVAVPATRSLLSNEENPSSAQDFLVQDAPDL--NDGD 60

Query: 61 SLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP 95
           L  V E +SEGR+ +E+ DYPGTGANNHHDP++P
Sbjct: 61 ELTDVGEGISEGRMDMESTDYPGTGANNHHDPRTP 91

The following BLAST results are available for this feature:

BLAST of Carg26089 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59481.1	5.4e-21	68.54	hypothetical protein Csa_3G822320 [Cucumis sativus]	[more]
PSS01686.1	4.9e-14	52.13	Protein Rev like [Actinidia chinensis var. chinensis]	[more]
OAY41877.1	3.2e-13	50.52	hypothetical protein MANES_09G136400 [Manihot esculenta]	[more]
XP_021667885.1	5.4e-13	51.58	uncharacterized protein LOC110655749 isoform X2 [Hevea brasiliensis]	[more]
XP_021621188.1	9.3e-13	51.55	uncharacterized protein LOC110621277 [Manihot esculenta] >OAY44460.1 hypothetica...	[more]

BLAST of Carg26089 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg26089 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26089 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHJ0\|A0A0A0LHJ0_CUCSA	3.6e-21	68.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1	[more]
tr\|A0A2R6Q481\|A0A2R6Q481_ACTCH	3.3e-14	52.13	Protein Rev like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23...	[more]
tr\|A0A2C9VAL3\|A0A2C9VAL3_MANES	2.1e-13	50.52	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G136400 PE=4 SV=...	[more]
tr\|A0A2C9VHT8\|A0A2C9VHT8_MANES	6.1e-13	51.55	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G152200 PE=4 SV=...	[more]
tr\|A0A2P2KYL1\|A0A2P2KYL1_RHIMU	5.2e-12	52.63	Uncharacterized protein MANES_09G136400 OS=Rhizophora mucronata OX=61149 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26089-RA	Carg26089-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..98
None	No IPR available	PANTHER	PTHR33474:SF2	SUBFAMILY NOT NAMED	coord: 11..94
None	No IPR available	PANTHER	PTHR33474	FAMILY NOT NAMED	coord: 11..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26089	Cla002908	Watermelon (97103) v1	carwmB0309
Carg26089	Csa3G822320	Cucumber (Chinese Long) v2	carcuB0345
Carg26089	ClCG10G015920	Watermelon (Charleston Gray)	carwcgB0311
Carg26089	CSPI03G38150	Wild cucumber (PI 183967)	carcpiB0351
Carg26089	CmaCh14G005340	Cucurbita maxima (Rimu)	carcmaB0446
Carg26089	CmaCh06G009050	Cucurbita maxima (Rimu)	carcmaB0447
Carg26089	CmoCh06G009320	Cucurbita moschata (Rifu)	carcmoB0438
Carg26089	Lsi03G015760	Bottle gourd (USVL1VR-Ls)	carlsiB292
Carg26089	Cp4.1LG03g08450	Cucurbita pepo (Zucchini)	carcpeB0444
Carg26089	CsGy3G035620	Cucumber (Gy14) v2	carcgybB0329
Carg26089	CsaV3_3G040570	Cucumber (Chinese Long) v3	carcucB0350
Carg26089	Cla97C10G198800	Watermelon (97103) v2	carwmbB0327
Carg26089	Bhi11G002371	Wax gourd	carwgoB0403

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None