CmaCh14G005340 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G005340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Calcium-transporting ATPase 9, plasma membrane-type-like protein
Location	Cma_Chr14 : 2650303 .. 2651130 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTTATATAAATGTTCTCCCACATCGGTTTTCTTGCCAAACTGCTACCTATCCATCCCTTTTTATACAGAGATCTATTCTGTTTGTTTCCCGAGAAAACATGGGTCAGAAAATTTCCCTCACCCTCCGGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCCGTTCCCACCACAAGTAAACAAACCCTTTCTCTCTCATAATTCACTTCAATTTTCATCTTTCTCTCTCCTTTTTTTTTTTTTTTAATGAATTTGTGATTTTTTTAGGGATTTTCAAATCGACTTTCGATCAGCCATCTGCTTTCGTTTTTCAGGTTTTTTTTTTTTTTTTTTTCTCGAGAAAGTGGTTTCTTTTTCTGGGAAATTTTCTCGGCAACCAAACAGGTATGATTGAGAAATTGAATTGTGTTTTGATCTATAATTTTTGTAGGATTTGAGAGATTTGGAGTTGAACGGTGGAGATTCATTTGGAAGATTGGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAATACTCCGGCGAAGCCATAACTTTATTATTAATTTTTTTTTTCTTAACCAAAATTTAGAAGTAAAAGGGTTAGTATTGGAAGAAATGCTCACTTTTTTTAATACATATAAACTTGGTTAAATTAAAAAAAAAAAGAAAAGAAAAGAAAAAAAGAAAGGGCAATTCTGTCTTTTCACTCCGTTGCTTGTAGTCTACTAATAATTTAGTATTTGTTTGGACTTTTTTCCTTTTGTAATATATTATAAGTTTATTGGTTTAATCATTTACTAATGTTA

mRNA sequence

TTGTTTATATAAATGTTCTCCCACATCGGTTTTCTTGCCAAACTGCTACCTATCCATCCCTTTTTATACAGAGATCTATTCTGTTTGTTTCCCGAGAAAACATGGGTCAGAAAATTTCCCTCACCCTCCGGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCCGTTCCCACCACAAGGATTTTCAAATCGACTTTCGATCAGCCATCTGCTTTCGTTTTTCAGGATTTGAGAGATTTGGAGTTGAACGGTGGAGATTCATTTGGAAGATTGGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAATACTCCGGCGAAGCCATAACTTTATTATTAATTTTTTTTTTCTTAACCAAAATTTAGAAGTAAAAGGGTTAGTATTGGAAGAAATGCTCACTTTTTTTAATACATATAAACTTGGTTAAATTAAAAAAAAAAAGAAAAGAAAAGAAAAAAAGAAAGGGCAATTCTGTCTTTTCACTCCGTTGCTTGTAGTCTACTAATAATTTAGTATTTGTTTGGACTTTTTTCCTTTTGTAATATATTATAAGTTTATTGGTTTAATCATTTACTAATGTTA

Coding sequence (CDS)

ATGGGTCAGAAAATTTCCCTCACCCTCCGGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCCGTTCCCACCACAAGGATTTTCAAATCGACTTTCGATCAGCCATCTGCTTTCGTTTTTCAGGATTTGAGAGATTTGGAGTTGAACGGTGGAGATTCATTTGGAAGATTGGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAATACTCCGGCGAAGCCATAA

Protein sequence

MGQKISLTLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAFVFQDLRDLELNGGDSFGRLVLENNDYPGTGANNHHDPNTPAKP

Homology

[Close]

BLAST of CmaCh14G005340 vs. TrEMBL
Match: A0A0A0LHJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822320 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 64/97 (65.98%), Postives = 70/97 (72.16%), Query Frame = 1


Query: 1  MGQKISLTLRRLLLLFLGFSLLLSS---VAVPTTRIFKSTFDQPS--AFVFQDLRDLELN 60
          MGQKI        LLFL FS LLSS   +AVPTTRI KSTFD PS  A V QD+RD+E+ 
Sbjct: 1  MGQKIFT----FFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEII 60

Query: 61 GGDSF-----GRLVLENNDYPGTGANNHHDPNTPAKP 88
           GDSF     GRL+LENNDYPGTGANNHHDP +PAKP
Sbjct: 61 DGDSFERLFEGRLILENNDYPGTGANNHHDPKSPAKP 93

[Close]

BLAST of CmaCh14G005340 vs. TrEMBL
Match: B9SI56_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1320880 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 1


Query: 12 LLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSA-----FVFQDLRDLELNGGDS----FGR 71
          LLL FLGFS LLSS+AVPTTR  KST D PS+      + Q+  DL   G +      GR
Sbjct: 10 LLLFFLGFSFLLSSLAVPTTRSLKSTEDNPSSSVQDFLIHQEGMDLSSQGEELDFIIAGR 69

Query: 72 LVLENNDYPGTGANNHHDPNTPAK 87
          + LE+ DYPGTGANNHHDP TP +
Sbjct: 70 MDLESTDYPGTGANNHHDPKTPGR 93

[Close]

BLAST of CmaCh14G005340 vs. TrEMBL
Match: A0A059DGS7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02145 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.8e-10
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 11  RLLLLFLGFSLLLSSVAVPTTRIFKSTFDQ-------PSAFVFQDLRDLELNGGDSF--G 70
           RLL+LFLGFS LLSS+AVP+TR  KS+ ++       P+     ++  +   G   F   
Sbjct: 39  RLLVLFLGFSCLLSSLAVPSTRSLKSSSEEDDGELSVPNLLAQDEIMGMSGGGEMVFMER 98

Query: 71  RLVLENNDYPGTGANNHHDPNTPAK 87
           R+ +E+NDYPGTGANNHHDP TP +
Sbjct: 99  RMEMESNDYPGTGANNHHDPKTPGR 123

[Close]

BLAST of CmaCh14G005340 vs. TrEMBL
Match: A0A0D2QZ05_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G253600 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-09
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 11 RLLLLFLGFS-LLLSSVAVPTTRIFKSTFDQPSA---FVFQDLRDLE-----LNGGDSFG 70
          RL+LLFLGFS LLLS  AVPTTR  KS  + PS+    + QD+ +L      +  GD F 
Sbjct: 8  RLMLLFLGFSYLLLSCAAVPTTRSLKSNKELPSSVQDLLAQDVMELSDGEEVITEGDGFN 67

Query: 71 --RLVLENNDYPGTGANNHHDPNTPAK 87
            R+++E+ DYPGTGAN +HDP TP +
Sbjct: 68 GERMLMESTDYPGTGANKNHDPKTPGR 94

[Close]

BLAST of CmaCh14G005340 vs. TrEMBL
Match: A0A067DCK9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034425mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-09
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 1


Query: 11 RLLLLFLGFSLLLSSVAVPTTRIFKSTFDQP---------SAFVFQDLRDL-ELNGGDSF 70
          +LL+LFLGFS +LSS AVP TR+ KS  + P          A    D  +L  +  G   
Sbjct: 8  KLLVLFLGFSFVLSSTAVPATRMAKSDNENPIQVQELLAQEAMEVSDSEELLGMEQGYIE 67

Query: 71 GRLVLENNDYPGTGANNHHDPNTPAK 87
          GR+ +E+ DYPGTGANNHHDP TP +
Sbjct: 68 GRMDMESTDYPGTGANNHHDPKTPGR 93

[Close]

BLAST of CmaCh14G005340 vs. NCBI nr
Match: gi|700204348|gb|KGN59481.1| (hypothetical protein Csa_3G822320 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 64/97 (65.98%), Postives = 70/97 (72.16%), Query Frame = 1


Query: 1  MGQKISLTLRRLLLLFLGFSLLLSS---VAVPTTRIFKSTFDQPS--AFVFQDLRDLELN 60
          MGQKI        LLFL FS LLSS   +AVPTTRI KSTFD PS  A V QD+RD+E+ 
Sbjct: 1  MGQKIFT----FFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEII 60

Query: 61 GGDSF-----GRLVLENNDYPGTGANNHHDPNTPAKP 88
           GDSF     GRL+LENNDYPGTGANNHHDP +PAKP
Sbjct: 61 DGDSFERLFEGRLILENNDYPGTGANNHHDPKSPAKP 93

[Close]

BLAST of CmaCh14G005340 vs. NCBI nr
Match: gi|802585324|ref|XP_012070364.1| (PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas])

HSP 1 Score: 85.5 bits (210), Expect = 5.0e-14
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 11 RLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAFV----FQDL----RDLELNGGDSFGR 70
          R+LLLFLGFS ++SS+AVPTTR  KST + PS+ V     QDL      L+L  GD  GR
Sbjct: 7  RILLLFLGFSFVISSLAVPTTRSLKSTRENPSSSVQDLLTQDLDFGEEQLDLIEGDMNGR 66

Query: 71 LVLENNDYPGTGANNHHDPNTPAK 87
          + LE+ DYPGTGANNHHDP TP +
Sbjct: 67 MDLESQDYPGTGANNHHDPKTPGR 90

[Close]

BLAST of CmaCh14G005340 vs. NCBI nr
Match: gi|255569416|ref|XP_002525675.1| (PREDICTED: uncharacterized protein LOC8286483 [Ricinus communis])

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 1


Query: 12 LLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSA-----FVFQDLRDLELNGGDS----FGR 71
          LLL FLGFS LLSS+AVPTTR  KST D PS+      + Q+  DL   G +      GR
Sbjct: 10 LLLFFLGFSFLLSSLAVPTTRSLKSTEDNPSSSVQDFLIHQEGMDLSSQGEELDFIIAGR 69

Query: 72 LVLENNDYPGTGANNHHDPNTPAK 87
          + LE+ DYPGTGANNHHDP TP +
Sbjct: 70 MDLESTDYPGTGANNHHDPKTPGR 93

[Close]

BLAST of CmaCh14G005340 vs. NCBI nr
Match: gi|1009173335|ref|XP_015867762.1| (PREDICTED: uncharacterized protein LOC107405246 [Ziziphus jujuba])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = 1


Query: 1  MGQKISLTLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSA---------FVFQDLRD 60
          M QK+ LTL  L+LL LGFS  L S A+PTTR+ KST +  S+            +D  +
Sbjct: 1  MVQKLLLTLL-LVLLLLGFSNHLYSSAIPTTRVLKSTMEDSSSPQSLLVQSEVQLEDGEE 60

Query: 61 LELNGGDSF--GRLVLENNDYPGTGANNHHDPNTPAK 87
          L   G + F  GR+V+EN DYPGTGANNHHDP TP +
Sbjct: 61 LFEVGEEGFYEGRMVMENTDYPGTGANNHHDPRTPGR 96

[Close]

BLAST of CmaCh14G005340 vs. NCBI nr
Match: gi|702246528|ref|XP_010055020.1| (PREDICTED: uncharacterized protein LOC104443364 [Eucalyptus grandis])

HSP 1 Score: 71.2 bits (173), Expect = 9.8e-10
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 11  RLLLLFLGFSLLLSSVAVPTTRIFKSTFDQ-------PSAFVFQDLRDLELNGGDSF--G 70
           RLL+LFLGFS LLSS+AVP+TR  KS+ ++       P+     ++  +   G   F   
Sbjct: 39  RLLVLFLGFSCLLSSLAVPSTRSLKSSSEEDDGELSVPNLLAQDEIMGMSGGGEMVFMER 98

Query: 71  RLVLENNDYPGTGANNHHDPNTPAK 87
           R+ +E+NDYPGTGANNHHDP TP +
Sbjct: 99  RMEMESNDYPGTGANNHHDPKTPGR 123

The following BLAST results are available for this feature:

BLAST of CmaCh14G005340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G005340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ0_CUCSA	1.1e-20	65.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822320 PE=4 SV=1	[more]
B9SI56_RICCO	1.1e-12	55.95	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1320880 PE=4 SV=1	[more]
A0A059DGS7_EUCGR	6.8e-10	48.24	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02145 PE=4 SV=1	[more]
A0A0D2QZ05_GOSRA	1.5e-09	50.57	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G253600 PE=4 SV=1	[more]
A0A067DCK9_CITSI	3.4e-09	47.67	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034425mg PE=4 SV=1	[more]

BLAST of CmaCh14G005340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh14G005340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204348\|gb\|KGN59481.1\|	1.6e-20	65.98	hypothetical protein Csa_3G822320 [Cucumis sativus]	[more]
gi\|802585324\|ref\|XP_012070364.1\|	5.0e-14	58.33	PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]	[more]
gi\|255569416\|ref\|XP_002525675.1\|	1.6e-12	55.95	PREDICTED: uncharacterized protein LOC8286483 [Ricinus communis]	[more]
gi\|1009173335\|ref\|XP_015867762.1\|	1.2e-10	49.48	PREDICTED: uncharacterized protein LOC107405246 [Ziziphus jujuba]	[more]
gi\|702246528\|ref\|XP_010055020.1\|	9.8e-10	48.24	PREDICTED: uncharacterized protein LOC104443364 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G005340.1	CmaCh14G005340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33474	FAMILY NOT NAMED	coord: 1..87 score: 1.5
None	No IPR available	PANTHER	PTHR33474:SF2	SUBFAMILY NOT NAMED	coord: 1..87 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G005340	Cla002908	Watermelon (97103) v1	cmawmB228
CmaCh14G005340	Csa3G822320	Cucumber (Chinese Long) v2	cmacuB239
CmaCh14G005340	ClCG10G015920	Watermelon (Charleston Gray)	cmawcgB222
CmaCh14G005340	CSPI03G38150	Wild cucumber (PI 183967)	cmacpiB241
CmaCh14G005340	CmoCh14G005350	Cucurbita moschata (Rifu)	cmacmoB244
CmaCh14G005340	CmoCh06G009320	Cucurbita moschata (Rifu)	cmacmoB274
CmaCh14G005340	Lsi03G015760	Bottle gourd (USVL1VR-Ls)	cmalsiB242
CmaCh14G005340	Cp4.1LG03g08450	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G005340	CsaV3_3G040570	Cucumber (Chinese Long) v3	cmacucB0279
CmaCh14G005340	Cla97C10G198800	Watermelon (97103) v2	cmawmbB249
CmaCh14G005340	Bhi11G002371	Wax gourd	cmawgoB0291
CmaCh14G005340	CsGy3G035620	Cucumber (Gy14) v2	cgybcmaB306
CmaCh14G005340	Carg03468	Silver-seed gourd	carcmaB0343
CmaCh14G005340	Carg26089	Silver-seed gourd	carcmaB0446

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G005340	CmaCh06G009050	Cucurbita maxima (Rimu)	cmacmaB290

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G005340	Cucumber (Gy14) v1	cgycmaB0926
CmaCh14G005340	Melon (DHL92) v3.5.1	cmameB229
CmaCh14G005340	Cucurbita pepo (Zucchini)	cmacpeB295
CmaCh14G005340	Melon (DHL92) v3.6.1	cmamedB260