Cp4.1LG02g02100 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG02g02100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG02 : 4163594 .. 4163803 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCATGCCTGTTCCTGGCCTTCCTCCTCTGCCAACCTCACACCACCTTAGCAATCAGGAGCTTCTACCACAAGGACACCAAGCTGCCTTCAATGGGCGTCGTCGACTTCGACATGCTACTCGGCTCTCTCCCAAGAGGCCCCATACCCCCCTCCGCCCCGAGCAACCGGGAAAATCCCGCTCCCTTCAGCGGCGGTGGCGACTAA

mRNA sequence

ATGGCGGCATGCCTGTTCCTGGCCTTCCTCCTCTGCCAACCTCACACCACCTTAGCAATCAGGAGCTTCTACCACAAGGACACCAAGCTGCCTTCAATGGGCGTCGTCGACTTCGACATGCTACTCGGCTCTCTCCCAAGAGGCCCCATACCCCCCTCCGCCCCGAGCAACCGGGAAAATCCCGCTCCCTTCAGCGGCGGTGGCGACTAA

Coding sequence (CDS)

ATGGCGGCATGCCTGTTCCTGGCCTTCCTCCTCTGCCAACCTCACACCACCTTAGCAATCAGGAGCTTCTACCACAAGGACACCAAGCTGCCTTCAATGGGCGTCGTCGACTTCGACATGCTACTCGGCTCTCTCCCAAGAGGCCCCATACCCCCCTCCGCCCCGAGCAACCGGGAAAATCCCGCTCCCTTCAGCGGCGGTGGCGACTAA

Protein sequence

MAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPSAPSNRENPAPFSGGGD
BLAST of Cp4.1LG02g02100 vs. TrEMBL
Match: A0A0A0KZH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625050 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.0e-09
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1

Query: 1  MAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPSAPSNREN 60
          M A L +A +L Q H +L IR   +K+ K+  +GV    MLLG+LP+GP PPSAPS R N
Sbjct: 9  MVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAPSERGN 68

Query: 61 PAPFSGG 68
          PAPFS G
Sbjct: 69 PAPFSDG 75

BLAST of Cp4.1LG02g02100 vs. NCBI nr
Match: gi|659127551|ref|XP_008463761.1| (PREDICTED: uncharacterized protein LOC103501827 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-10
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1

Query: 1  MAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPSAPSNREN 60
          M A L +A +LCQ H +L IR   +K+ K+  MGV    MLLG+LP+GP PPSAPS R N
Sbjct: 9  MVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPSAPSERGN 68

Query: 61 PAPFSGG 68
          PAPFS G
Sbjct: 69 PAPFSDG 75

BLAST of Cp4.1LG02g02100 vs. NCBI nr
Match: gi|700199892|gb|KGN55050.1| (hypothetical protein Csa_4G625050 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 8.6e-09
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1

Query: 1  MAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPSAPSNREN 60
          M A L +A +L Q H +L IR   +K+ K+  +GV    MLLG+LP+GP PPSAPS R N
Sbjct: 9  MVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAPSERGN 68

Query: 61 PAPFSGG 68
          PAPFS G
Sbjct: 69 PAPFSDG 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZH3_CUCSA6.0e-0953.73Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625050 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659127551|ref|XP_008463761.1|3.5e-1056.72PREDICTED: uncharacterized protein LOC103501827 [Cucumis melo][more]
gi|700199892|gb|KGN55050.1|8.6e-0953.73hypothetical protein Csa_4G625050 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g02100.1Cp4.1LG02g02100.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g02100Cucurbita pepo (Zucchini)cpecpeB469
Cp4.1LG02g02100Cucurbita maxima (Rimu)cmacpeB055
Cp4.1LG02g02100Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g02100Cucurbita moschata (Rifu)cmocpeB030
Cp4.1LG02g02100Cucurbita moschata (Rifu)cmocpeB448
Cp4.1LG02g02100Watermelon (97103) v1cpewmB581
Cp4.1LG02g02100Silver-seed gourdcarcpeB0431
Cp4.1LG02g02100Silver-seed gourdcarcpeB0903