MELO3C025653.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025653.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr07 : 4591991 .. 4592260 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGCAGAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTCGGTGCTATGCCAAGCACACATGAGCTTGGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATGGGGGTTGATGTTAATTATATGCTTCTCGGCGCTCTTCCGAAAGGCCCAACGCCCCCATCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTTAGTGATGGTGATCGAGTCTTGGTATCTGCTCCGAGTCCCGGAATTGGTCATCGTTAA

mRNA sequence

ATGGGTAGCAGAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTCGGTGCTATGCCAAGCACACATGAGCTTGGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATGGGGGTTGATGTTAATTATATGCTTCTCGGCGCTCTTCCGAAAGGCCCAACGCCCCCATCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTTAGTGATGGTGATCGAGTCTTGGTATCTGCTCCGAGTCCCGGAATTGGTCATCGTTAA

Coding sequence (CDS)

ATGGGTAGCAGAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTCGGTGCTATGCCAAGCACACATGAGCTTGGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATGGGGGTTGATGTTAATTATATGCTTCTCGGCGCTCTTCCGAAAGGCCCAACGCCCCCATCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTTAGTGATGGTGATCGAGTCTTGGTATCTGCTCCGAGTCCCGGAATTGGTCATCGTTAA

Protein sequence

MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDGDRVLVSAPSPGIGHR

Homology

[Close]

BLAST of MELO3C025653.2 vs. NCBI nr
Match: KGN55050.1 (hypothetical protein Csa_4G625050 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 9.9e-38
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          MGS+K IMVALLVVA VL QAHMSLGIRKLSNKEMKMVP+GVDVNYMLLGALPKGPTPPS
Sbjct: 2  MGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90
          APSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90

[Close]

BLAST of MELO3C025653.2 vs. TAIR10
Match: AT1G16950.1 (unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.2e-06
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 16 SVLCQAHMSLGIRKLSNKEMK-MVPMGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDG 75
          S++C   + +G    S++  K +VP G     + L ALPKG  PPS PS++G+ +P  D 
Sbjct: 9  SMICLLILIVGFVLQSSQARKVLVPYGTSKG-LFLSALPKGNVPPSGPSDKGHTSPPDDT 68

Query: 76 D------------RVLVSAPSPGIGH 89
          D            R L S PSPG+GH
Sbjct: 69 DQRMVPENSPEIYRRLESVPSPGVGH 93

[Close]

BLAST of MELO3C025653.2 vs. Swiss-Prot
Match: sp|Q9FZ54|PCP13_ARATH (Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.5e-05
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 16 SVLCQAHMSLGIRKLSNKEMK-MVPMGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDG 75
          S++C   + +G    S++  K +VP G     + L ALPKG  PPS PS++G+ +P  D 
Sbjct: 9  SMICLLILIVGFVLQSSQARKVLVPYGTSKG-LFLSALPKGNVPPSGPSDKGHTSPPDDT 68

Query: 76 D------------RVLVSAPSPGIGH 89
          D            R L S PSPG+GH
Sbjct: 69 DQRMVPENSPEIYRRLESVPSPGVGH 93

[Close]

BLAST of MELO3C025653.2 vs. TrEMBL
Match: tr|A0A0A0KZH3|A0A0A0KZH3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.5e-38
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          MGS+K IMVALLVVA VL QAHMSLGIRKLSNKEMKMVP+GVDVNYMLLGALPKGPTPPS
Sbjct: 2  MGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90
          APSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90

The following BLAST results are available for this feature:

BLAST of MELO3C025653.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55050.1	9.9e-38	94.38	hypothetical protein Csa_4G625050 [Cucumis sativus]	[more]

BLAST of MELO3C025653.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16950.1	4.2e-06	37.21	unknown protein	[more]

BLAST of MELO3C025653.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FZ54\|PCP13_ARATH	7.5e-05	37.21	Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1	[more]

BLAST of MELO3C025653.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZH3\|A0A0A0KZH3_CUCSA	6.5e-38	94.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025653.2.1	MELO3C025653.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C025653.2	Csa4G625050	Cucumber (Chinese Long) v2	cumedB283
MELO3C025653.2	CSPI04G22720	Wild cucumber (PI 183967)	cpimedB287
MELO3C025653.2	Cucsa.057790	Cucumber (Gy14) v1	cgymedB042
MELO3C025653.2	Lsi04G019970	Bottle gourd (USVL1VR-Ls)	lsimedB331
MELO3C025653.2	Cp4.1LG02g02100	Cucurbita pepo (Zucchini)	cpemedB631
MELO3C025653.2	CsGy4G021180	Cucumber (Gy14) v2	cgybmedB252
MELO3C025653.2	ClCG11G017330	Watermelon (Charleston Gray)	medwcgB450
MELO3C025653.2	Cla97C11G223420	Watermelon (97103) v2	medwmbB460
MELO3C025653.2	Bhi09G002884	Wax gourd	medwgoB609
MELO3C025653.2	CsaV3_4G032960	Cucumber (Chinese Long) v3	cucmedB291

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025653.2	Cucurbita maxima (Rimu)	cmamedB044
MELO3C025653.2	Cucurbita maxima (Rimu)	cmamedB509
MELO3C025653.2	Cucurbita moschata (Rifu)	cmomedB034
MELO3C025653.2	Cucurbita moschata (Rifu)	cmomedB497
MELO3C025653.2	Cucurbita pepo (Zucchini)	cpemedB870
MELO3C025653.2	Watermelon (97103) v1	medwmB524
MELO3C025653.2	Silver-seed gourd	carmedB0326
MELO3C025653.2	Silver-seed gourd	carmedB0644