Csa4G625050 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G625050
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 20202913 .. 20203185 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGCAGCAAAAAGTTGATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTATCCCAAGCACACATGAGCTTAGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATCGGCGTTGATGTTAATTATATGCTTCTTGGCGCTCTTCCAAAAGGCCCAACGCCTCCGTCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTCAGTGATGGTGATCGCGTCTTGGTATCTGCTCCGAGCCCCGGAATTGGCCATCGTTGA

mRNA sequence

ATGATGGGCAGCAAAAAGTTGATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTATCCCAAGCACACATGAGCTTAGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATCGGCGTTGATGTTAATTATATGCTTCTTGGCGCTCTTCCAAAAGGCCCAACGCCTCCGTCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTCAGTGATGGTGATCGCGTCTTGGTATCTGCTCCGAGCCCCGGAATTGGCCATCGTTGA

Coding sequence (CDS)

ATGATGGGCAGCAAAAAGTTGATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTATCCCAAGCACACATGAGCTTAGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATCGGCGTTGATGTTAATTATATGCTTCTTGGCGCTCTTCCAAAAGGCCCAACGCCTCCGTCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTCAGTGATGGTGATCGCGTCTTGGTATCTGCTCCGAGCCCCGGAATTGGCCATCGTTGA

Protein sequence

MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDGDRVLVSAPSPGIGHR*
Homology
[Close]
BLAST of Csa4G625050 vs. TrEMBL
Match: A0A0A0KZH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625050 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60
          MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP
Sbjct: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60

Query: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 91
          SAPSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 90

[Close]
BLAST of Csa4G625050 vs. TAIR10
Match: AT1G16950.1 (AT1G16950.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 6.6e-07
Identity = 35/98 (35.71%), Postives = 46/98 (46.94%), Query Frame = 1 

Query: 4  SKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAP 63
          S  +I + +L+V  VL  +      RK+      +VP G     + L ALPKG  PPS P
Sbjct: 7  SISMICLLILIVGFVLQSSQA----RKV------LVPYGTSKG-LFLSALPKGNVPPSGP 66

Query: 64 SERGNPAPFSDGD------------RVLVSAPSPGIGH 90
          S++G+ +P  D D            R L S PSPG+GH
Sbjct: 67 SDKGHTSPPDDTDQRMVPENSPEIYRRLESVPSPGVGH 93

[Close]
BLAST of Csa4G625050 vs. NCBI nr
Match: gi|700199892|gb|KGN55050.1| (hypothetical protein Csa_4G625050 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.7e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60
          MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP
Sbjct: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60

Query: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 91
          SAPSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 90

[Close]
BLAST of Csa4G625050 vs. NCBI nr
Match: gi|659127551|ref|XP_008463761.1| (PREDICTED: uncharacterized protein LOC103501827 [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-40
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 1 

Query: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60
          MMGS+K IMVALLVVA VL QAHMSLGIRKLSNKEMKMVP+GVDVNYMLLGALPKGPTPP
Sbjct: 1  MMGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPP 60

Query: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 91
          SAPSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 90

The following BLAST results are available for this feature:
BLAST of Csa4G625050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZH3_CUCSA1.9e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625050 PE=4 SV=1[more]
BLAST of Csa4G625050 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16950.16.6e-0735.71 unknown protein[more]
BLAST of Csa4G625050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199892|gb|KGN55050.1|2.7e-42100.00hypothetical protein Csa_4G625050 [Cucumis sativus][more]
gi|659127551|ref|XP_008463761.1|7.3e-4094.44PREDICTED: uncharacterized protein LOC103501827 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G625050.1Csa4G625050.1mRNA