Cp4.1LG02g02100.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g02100.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG02 : 4163594 .. 4163803 (+)
Sequence length	210

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCATGCCTGTTCCTGGCCTTCCTCCTCTGCCAACCTCACACCACCTTAGCAATCAGGAGCTTCTACCACAAGGACACCAAGCTGCCTTCAATGGGCGTCGTCGACTTCGACATGCTACTCGGCTCTCTCCCAAGAGGCCCCATACCCCCCTCCGCCCCGAGCAACCGGGAAAATCCCGCTCCCTTCAGCGGCGGTGGCGACTAA

mRNA sequence

ATGGCGGCATGCCTGTTCCTGGCCTTCCTCCTCTGCCAACCTCACACCACCTTAGCAATCAGGAGCTTCTACCACAAGGACACCAAGCTGCCTTCAATGGGCGTCGTCGACTTCGACATGCTACTCGGCTCTCTCCCAAGAGGCCCCATACCCCCCTCCGCCCCGAGCAACCGGGAAAATCCCGCTCCCTTCAGCGGCGGTGGCGACTAA

Coding sequence (CDS)

ATGGCGGCATGCCTGTTCCTGGCCTTCCTCCTCTGCCAACCTCACACCACCTTAGCAATCAGGAGCTTCTACCACAAGGACACCAAGCTGCCTTCAATGGGCGTCGTCGACTTCGACATGCTACTCGGCTCTCTCCCAAGAGGCCCCATACCCCCCTCCGCCCCGAGCAACCGGGAAAATCCCGCTCCCTTCAGCGGCGGTGGCGACTAA

Protein sequence

MAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPSAPSNRENPAPFSGGGD

Homology

[Close]

BLAST of Cp4.1LG02g02100.1 vs. TrEMBL
Match: A0A0A0KZH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625050 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.0e-09
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1


Query: 1  MAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPSAPSNREN 60
          M A L +A +L Q H +L IR   +K+ K+  +GV    MLLG+LP+GP PPSAPS R N
Sbjct: 9  MVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAPSERGN 68

Query: 61 PAPFSGG 68
          PAPFS G
Sbjct: 69 PAPFSDG 75

[Close]

BLAST of Cp4.1LG02g02100.1 vs. NCBI nr
Match: gi|659127551|ref|XP_008463761.1| (PREDICTED: uncharacterized protein LOC103501827 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-10
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1


Query: 1  MAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPSAPSNREN 60
          M A L +A +LCQ H +L IR   +K+ K+  MGV    MLLG+LP+GP PPSAPS R N
Sbjct: 9  MVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPSAPSERGN 68

Query: 61 PAPFSGG 68
          PAPFS G
Sbjct: 69 PAPFSDG 75

[Close]

BLAST of Cp4.1LG02g02100.1 vs. NCBI nr
Match: gi|700199892|gb|KGN55050.1| (hypothetical protein Csa_4G625050 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 8.6e-09
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1


Query: 1  MAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPSAPSNREN 60
          M A L +A +L Q H +L IR   +K+ K+  +GV    MLLG+LP+GP PPSAPS R N
Sbjct: 9  MVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAPSERGN 68

Query: 61 PAPFSGG 68
          PAPFS G
Sbjct: 69 PAPFSDG 75

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g02100.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g02100.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZH3_CUCSA	6.0e-09	53.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625050 PE=4 SV=1	[more]

BLAST of Cp4.1LG02g02100.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g02100.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127551\|ref\|XP_008463761.1\|	3.5e-10	56.72	PREDICTED: uncharacterized protein LOC103501827 [Cucumis melo]	[more]
gi\|700199892\|gb\|KGN55050.1\|	8.6e-09	53.73	hypothetical protein Csa_4G625050 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG02g02100	Cp4.1LG02g02100	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g02100.1:cds:001	Cp4.1LG02g02100.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g02100.1	Cp4.1LG02g02100.1-protein	polypeptide