Cp4.1LG01g22760 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g22760
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 20009913 .. 20010613 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATAATAATAATNAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTATCCTCTCACTGGCTTAGTGCTTCATTAAATTCCTCTGGATCTGAACACTCCTCATACGTTCCTTTTACTTTCCCTTCACAACTCTCTCCCTCTCTCTAAAATAATGCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTTTTGGTACTCAAAACAATTTCCCATATTTTTCTTCTATTTTCCTTCCCTTGATTCTCATAGTTCTTCATTTTTTCTTCAGGATTTGGCGTGGGAGCGATGGAAGCAGCGGCACATGCAGGCTGTGATATCAGTTCATCCCAAAAGGTAAGCTTTTTGGAAGCCTAGAAATGGAGTTTTTGGAAGATATTGGTGTAATTAACGAAGGGGTTTGTTTGTGTTGGCAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCACCTTCTTCTCCCCCTCCGCCGCCCTCTTCATGAATCTCACATAATAATTTCTTCTCTGTTCTTCGTTTCTTATATCATATTCTAACTTCCAAGTGTAATTCATGCATGGAATTGCACCTTTTAGTGTCAAATTTCCAGTAATTTGCTTCTAATATTCGATCAAATAATTACATTATTTTATGATTAG

mRNA sequence

TAATAATAATAATNAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTATCCTCTCACTGGCTTAGTGCTTCATTAAATTCCTCTGGATCTGAACACTCCTCATACGTTCCTTTTACTTTCCCTTCACAACTCTCTCCCTCTCTCTAAAATAATGCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTTTTGGTACTCAAAACAATTTCCCATATTTTTCTTCTATTTTCCTTCCCTTGATTCTCATAGTTCTTCATTTTTTCTTCAGGATTTGGCGTGGGAGCGATGGAAGCAGCGGCACATGCAGGCTGTGATATCAGTTCATCCCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCACCTTCTTCTCCCCCTCCGCCGCCCTCTTCATGAATCTCACATAATAATTTCTTCTCTGTTCTTCGTTTCTTATATCATATTCTAACTTCCAAGTGTAATTCATGCATGGAATTGCACCTTTTAGTGTCAAATTTCCAGTAATTTGCTTCTAATATTCGATCAAATAATTACATTATTTTATGATTAG

Coding sequence (CDS)

ATGGAAGCAGCGGCACATGCAGGCTGTGATATCAGTTCATCCCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCACCTTCTTCTCCCCCTCCGCCGCCCTCTTCATGA

Protein sequence

MEAAAHAGCDISSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPPPPPSS
Homology
[Close]
BLAST of Cp4.1LG01g22760 vs. TrEMBL
Match: A0A0A0KSB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-08
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 

Query: 11 ISSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPPPPPSS 59
          IS S K  GGK RK+M+E+MDYADPGPNTNTRSGYL PP  PPP P++
Sbjct: 41 ISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPP--PPPSPAT 86

[Close]
BLAST of Cp4.1LG01g22760 vs. NCBI nr
Match: gi|700197291|gb|KGN52468.1| (hypothetical protein Csa_5G636600 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-08
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 

Query: 11 ISSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPPPPPSS 59
          IS S K  GGK RK+M+E+MDYADPGPNTNTRSGYL PP  PPP P++
Sbjct: 41 ISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPP--PPPSPAT 86

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g22760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g22760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSB7_CUCSA4.2e-0870.83Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1[more]
BLAST of Cp4.1LG01g22760 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g22760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197291|gb|KGN52468.1|6.1e-0870.83hypothetical protein Csa_5G636600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g22760.1Cp4.1LG01g22760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g22760CmaCh04G027680Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g22760CmoCh04G028990Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g22760ClCG09G018150Watermelon (Charleston Gray)cpewcgB344
Cp4.1LG01g22760CsaV3_5G038110Cucumber (Chinese Long) v3cpecucB0517
Cp4.1LG01g22760Bhi06G000324Wax gourdcpewgoB0502
Cp4.1LG01g22760CsGy5G028400Cucumber (Gy14) v2cgybcpeB625
Cp4.1LG01g22760Carg04378Silver-seed gourdcarcpeB0965
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g22760Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g22760Cucurbita moschata (Rifu)cmocpeB437
Cp4.1LG01g22760Wild cucumber (PI 183967)cpecpiB380
Cp4.1LG01g22760Wild cucumber (PI 183967)cpecpiB414
Cp4.1LG01g22760Cucumber (Chinese Long) v2cpecuB380
Cp4.1LG01g22760Cucumber (Chinese Long) v2cpecuB415
Cp4.1LG01g22760Bottle gourd (USVL1VR-Ls)cpelsiB330
Cp4.1LG01g22760Bottle gourd (USVL1VR-Ls)cpelsiB336
Cp4.1LG01g22760Watermelon (Charleston Gray)cpewcgB387
Cp4.1LG01g22760Watermelon (97103) v1cpewmB381
Cp4.1LG01g22760Watermelon (97103) v1cpewmB449
Cp4.1LG01g22760Melon (DHL92) v3.5.1cpemeB358
Cp4.1LG01g22760Melon (DHL92) v3.5.1cpemeB386
Cp4.1LG01g22760Melon (DHL92) v3.5.1cpemeB391
Cp4.1LG01g22760Cucumber (Gy14) v2cgybcpeB643
Cp4.1LG01g22760Melon (DHL92) v3.6.1cpemedB418
Cp4.1LG01g22760Melon (DHL92) v3.6.1cpemedB447
Cp4.1LG01g22760Melon (DHL92) v3.6.1cpemedB455
Cp4.1LG01g22760Melon (DHL92) v3.6.1cpemedB474
Cp4.1LG01g22760Silver-seed gourdcarcpeB0070
Cp4.1LG01g22760Silver-seed gourdcarcpeB0374
Cp4.1LG01g22760Silver-seed gourdcarcpeB0612
Cp4.1LG01g22760Cucumber (Chinese Long) v3cpecucB0472
Cp4.1LG01g22760Cucumber (Chinese Long) v3cpecucB0495
Cp4.1LG01g22760Cucumber (Chinese Long) v3cpecucB0534
Cp4.1LG01g22760Wax gourdcpewgoB0552
Cp4.1LG01g22760Wax gourdcpewgoB0573
Cp4.1LG01g22760Cucurbita pepo (Zucchini)cpecpeB039
Cp4.1LG01g22760Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g22760Cucurbita pepo (Zucchini)cpecpeB347
Cp4.1LG01g22760Cucurbita pepo (Zucchini)cpecpeB391
Cp4.1LG01g22760Cucurbita pepo (Zucchini)cpecpeB397
Cp4.1LG01g22760Cucumber (Gy14) v1cgycpeB0255
Cp4.1LG01g22760Cucumber (Gy14) v1cgycpeB0425
Cp4.1LG01g22760Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g22760Cucurbita maxima (Rimu)cmacpeB479