CmoCh04G028990 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G028990
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 20621265 .. 20621979 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAATCTTATCCTCTCACTGCCTTAGTGCTTCATTAAATTCCTCTGGATCTGAACACTCCTCATACCTTCCTTTTACTTTCCCTTCACAACTCTCTCTCTAGCCGCCTTATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCGTTCTTGGTACTCCAAACAATTTCCCATATTTTTCTTCTATGTTCACTCCCTTGATCCTCATGGTTCTTCATTTTCTCTTCAGGATTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCACCAGTTCATCGCAAAAGGTAAGCTTTTTGGAAGCCTAGAAATGGAGTTTTTGGAAGATATTGGTGTAATTAACGAAGGGGTTTGTTTGTGTTGGCAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCCTGAATCTCAAATAATAATTTCTTCTCTGTTCTTCGTTTCTCATATCATATTCTAACTTCCAAGTGTAATTCATGCATGGAATTGCACCTTTTGCTGTCAGATTTCCAGTAATTTGCTTCTAATATTCGATCAAATAATTTCATTATTTTATGATTAATTATAACTTGGGTTTTGTGCAGTATTAATAAACTAAGCATTCG

mRNA sequence

AAAAAAAATCTTATCCTCTCACTGCCTTAGTGCTTCATTAAATTCCTCTGGATCTGAACACTCCTCATACCTTCCTTTTACTTTCCCTTCACAACTCTCTCTCTAGCCGCCTTATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCGTTCTTGGATTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCACCAGTTCATCGCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCCTGAATCTCAAATAATAATTTCTTCTCTGTTCTTCGTTTCTCATATCATATTCTAACTTCCAAGTGTAATTCATGCATGGAATTGCACCTTTTGCTGTCAGATTTCCAGTAATTTGCTTCTAATATTCGATCAAATAATTTCATTATTTTATGATTAATTATAACTTGGGTTTTGTGCAGTATTAATAAACTAAGCATTCG

Coding sequence (CDS)

ATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCGTTCTTGGATTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCACCAGTTCATCGCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCCTGA
Homology
[Close]
BLAST of CmoCh04G028990 vs. TrEMBL
Match: A0A0A0KSB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-12
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 1  MDHPKIFPILLLL--FIVLGFGVGA----MEAAAHPGYDTTSSSQKKSGGKPRKVMMEVM 60
          M HPK+F  LLLL  F++L F  G     +E+  H      S S K  GGK RK+M+E+M
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLTPPSSPPLP 80
          DYADPGPNTNTRSGYL PP  PP P
Sbjct: 61 DYADPGPNTNTRSGYLNPP-PPPSP 84

[Close]
BLAST of CmoCh04G028990 vs. NCBI nr
Match: gi|700197291|gb|KGN52468.1| (hypothetical protein Csa_5G636600 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 7.5e-12
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 1  MDHPKIFPILLLL--FIVLGFGVGA----MEAAAHPGYDTTSSSQKKSGGKPRKVMMEVM 60
          M HPK+F  LLLL  F++L F  G     +E+  H      S S K  GGK RK+M+E+M
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLTPPSSPPLP 80
          DYADPGPNTNTRSGYL PP  PP P
Sbjct: 61 DYADPGPNTNTRSGYLNPP-PPPSP 84

The following BLAST results are available for this feature:
BLAST of CmoCh04G028990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G028990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSB7_CUCSA5.3e-1255.29Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1[more]
BLAST of CmoCh04G028990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G028990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197291|gb|KGN52468.1|7.5e-1255.29hypothetical protein Csa_5G636600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G028990.1CmoCh04G028990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G028990Cucsa.158230Cucumber (Gy14) v1cgycmoB0442
CmoCh04G028990CmaCh04G027680Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G028990Csa5G636600Cucumber (Chinese Long) v2cmocuB714
CmoCh04G028990MELO3C021993Melon (DHL92) v3.5.1cmomeB624
CmoCh04G028990ClCG09G018150Watermelon (Charleston Gray)cmowcgB608
CmoCh04G028990Cp4.1LG01g22760Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G028990CsaV3_5G038110Cucumber (Chinese Long) v3cmocucB0846
CmoCh04G028990Carg04378Silver-seed gourdcarcmoB0940
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G028990Wax gourdcmowgoB0836
CmoCh04G028990Wax gourdcmowgoB0887
CmoCh04G028990Cucurbita moschata (Rifu)cmocmoB123
CmoCh04G028990Cucurbita moschata (Rifu)cmocmoB221
CmoCh04G028990Cucurbita moschata (Rifu)cmocmoB261
CmoCh04G028990Cucurbita moschata (Rifu)cmocmoB346
CmoCh04G028990Cucurbita moschata (Rifu)cmocmoB364
CmoCh04G028990Cucumber (Gy14) v1cgycmoB0271
CmoCh04G028990Cucumber (Gy14) v1cgycmoB0592
CmoCh04G028990Cucumber (Gy14) v1cgycmoB0939
CmoCh04G028990Cucurbita maxima (Rimu)cmacmoB158
CmoCh04G028990Cucurbita maxima (Rimu)cmacmoB267
CmoCh04G028990Cucurbita maxima (Rimu)cmacmoB308
CmoCh04G028990Cucurbita maxima (Rimu)cmacmoB480
CmoCh04G028990Wild cucumber (PI 183967)cmocpiB686
CmoCh04G028990Wild cucumber (PI 183967)cmocpiB688
CmoCh04G028990Wild cucumber (PI 183967)cmocpiB705
CmoCh04G028990Wild cucumber (PI 183967)cmocpiB722
CmoCh04G028990Cucumber (Chinese Long) v2cmocuB675
CmoCh04G028990Cucumber (Chinese Long) v2cmocuB695
CmoCh04G028990Melon (DHL92) v3.5.1cmomeB655
CmoCh04G028990Melon (DHL92) v3.5.1cmomeB664
CmoCh04G028990Melon (DHL92) v3.5.1cmomeB677
CmoCh04G028990Watermelon (Charleston Gray)cmowcgB614
CmoCh04G028990Watermelon (Charleston Gray)cmowcgB653
CmoCh04G028990Watermelon (Charleston Gray)cmowcgB667
CmoCh04G028990Watermelon (97103) v1cmowmB646
CmoCh04G028990Watermelon (97103) v1cmowmB652
CmoCh04G028990Watermelon (97103) v1cmowmB718
CmoCh04G028990Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G028990Cucurbita pepo (Zucchini)cmocpeB698
CmoCh04G028990Cucurbita pepo (Zucchini)cmocpeB704
CmoCh04G028990Bottle gourd (USVL1VR-Ls)cmolsiB636
CmoCh04G028990Bottle gourd (USVL1VR-Ls)cmolsiB640
CmoCh04G028990Bottle gourd (USVL1VR-Ls)cmolsiB647
CmoCh04G028990Cucumber (Gy14) v2cgybcmoB625
CmoCh04G028990Cucumber (Gy14) v2cgybcmoB642
CmoCh04G028990Melon (DHL92) v3.6.1cmomedB713
CmoCh04G028990Melon (DHL92) v3.6.1cmomedB745
CmoCh04G028990Melon (DHL92) v3.6.1cmomedB750
CmoCh04G028990Melon (DHL92) v3.6.1cmomedB766
CmoCh04G028990Silver-seed gourdcarcmoB0072
CmoCh04G028990Silver-seed gourdcarcmoB0143
CmoCh04G028990Silver-seed gourdcarcmoB0370
CmoCh04G028990Cucumber (Chinese Long) v3cmocucB0800
CmoCh04G028990Cucumber (Chinese Long) v3cmocucB0826
CmoCh04G028990Cucumber (Chinese Long) v3cmocucB0868
CmoCh04G028990Watermelon (97103) v2cmowmbB685
CmoCh04G028990Watermelon (97103) v2cmowmbB727
CmoCh04G028990Watermelon (97103) v2cmowmbB743
CmoCh04G028990Watermelon (97103) v2cmowmbB772