Cucsa.158230 (gene) Cucumber (Gy14) v1

NameCucsa.158230
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01142 : 372182 .. 372918 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTTGATAACTACAAAACCCTCTCTCTCTCTCTCTCTTTCTGTCTCAAAGTAACAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGTACTCAAACTTCTTCTTCTATTTATTTTCTAATCCTTTTTTCATGTATATTTCTATATATATATTCGTCTCCTGAGCTCACATCGTTTATTTTTAATTTTTTTTCTCAAGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGTGTGATTTTCTTTTTCAACAGTTGATAAAAGGGTATGTTTTTGTTTTAAAATTTTGGAATAATAATAATTTGATTATTGTGTTAACTTAGCAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAATTAATTTGTAATAGTTTTTCTTTTCTTTTTCTAATAAAAAGACCACAGCTAATAATATATATTGTTTAATTTCTGTGAGGTTTTTCATATCTAAGATATATTATGAATATTATTTTTCTTTTAACTTATTTATTCCAAGTGTAATTCATGCATGGTGGTGAGATAAATTGGAGGTTTTGTTGTCTTTT

mRNA sequence

TCCTTGATAACTACAAAACCctctctctctctctctctttctgtctcAAAGTAACAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAATTAATTTGTAATAGTTTTTCTTTTCTTTTTCTAATAAAAAGACCACAGCTAATAATATATATTGTTTAATTTCTGTGAGGTTTTTCATATCTAAGATATATTATGAATATTATTTTTCTTTTAACTTATTTATTCCAAGTGTAATTCATGCATGGTGGTGAGATAAATTGGAGGTTTTGTTGTCTTTT

Coding sequence (CDS)

ATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAA

Protein sequence

MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPSPAT*
BLAST of Cucsa.158230 vs. TrEMBL
Match: A0A0A0KSB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.0e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1

Query: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60
          MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLNPPPPPSPAT 87
          DYADPGPNTNTRSGYLNPPPPPSPAT
Sbjct: 61 DYADPGPNTNTRSGYLNPPPPPSPAT 86

BLAST of Cucsa.158230 vs. TrEMBL
Match: A0A0A0LCS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.9e-08
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1

Query: 1  MVHPKLFSTLLLLSCFLLLSFTHG------LKVEMIESLGHGSNVRISPSLKGIGGKSRK 60
          M      S LLLLS  + L F++G      + VE ++S  H S V +  S    G K R 
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDS-HHNSRVLLEES----GRKWRM 60

Query: 61 MMIEIMDYADPGPNTNTRSGYLNPPPPPS 84
          M +E MDYADP PNTN + GY++PPPPP+
Sbjct: 61 MKMETMDYADPEPNTNVKGGYVSPPPPPN 84

BLAST of Cucsa.158230 vs. TrEMBL
Match: V4UXA1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013233mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.0e-07
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1

Query: 7  FSTLLLLSCFLLLSFTHGLKVEMIESLG-HGSNVRISPSLKGIGGKSRKMMIEIMDYADP 66
          F  LLL+S  LLLS  HG   ++ ES+    S V +  +    G + R+MM E+MDY DP
Sbjct: 6  FYKLLLVSVLLLLSLPHGFSRQLKESVEFEDSTVHVQEA----GAEPREMM-ELMDYKDP 65

Query: 67 GPNTNTRSGYLNPPPP 82
          GPNTN +SG++  PPP
Sbjct: 66 GPNTNPKSGFMLSPPP 76

BLAST of Cucsa.158230 vs. TrEMBL
Match: A0A0B0N658_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_14499 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1

Query: 7  FSTLLLLSCFLLLSFTHGLKV-EMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADP 66
          F  LLLLS  LLLSF+ G  + +M+E++    +   +  L+     SR+M IEIMDY DP
Sbjct: 6  FLNLLLLSMLLLLSFSQGFSIRKMMETVEFEES---TAQLEENADTSREM-IEIMDYKDP 65

Query: 67 GPNTNTRSGYLNPPPP 82
          GPN N R+GY+  PPP
Sbjct: 66 GPNVNPRTGYIFSPPP 77

BLAST of Cucsa.158230 vs. TrEMBL
Match: A0A0D2TB26_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G079400 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 1

Query: 7  FSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRI---SPSLKGIGGKSRKMMIEIMDYA 66
          F  LLLLS   +LSF+ GL  + +E+     NV     S  L+    K+R+MM EIMDY 
Sbjct: 6  FLKLLLLSMLFILSFSQGLGRKWMEN-----NVEFQDYSVQLEEFAEKAREMM-EIMDYK 65

Query: 67 DPGPNTNTRSGYL-NPPPPPSP 85
          +PGPNTN R+ Y+  PPP P P
Sbjct: 66 EPGPNTNPRTSYIFGPPPQPQP 81

BLAST of Cucsa.158230 vs. NCBI nr
Match: gi|700197291|gb|KGN52468.1| (hypothetical protein Csa_5G636600 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.3e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1

Query: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60
          MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLNPPPPPSPAT 87
          DYADPGPNTNTRSGYLNPPPPPSPAT
Sbjct: 61 DYADPGPNTNTRSGYLNPPPPPSPAT 86

BLAST of Cucsa.158230 vs. NCBI nr
Match: gi|778685535|ref|XP_011652234.1| (PREDICTED: uncharacterized protein LOC105435001 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 7.0e-08
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1

Query: 1  MVHPKLFSTLLLLSCFLLLSFTHG------LKVEMIESLGHGSNVRISPSLKGIGGKSRK 60
          M      S LLLLS  + L F++G      + VE ++S  H S V +  S    G K R 
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDS-HHNSRVLLEES----GRKWRM 60

Query: 61 MMIEIMDYADPGPNTNTRSGYLNPPPPPS 84
          M +E MDYADP PNTN + GY++PPPPP+
Sbjct: 61 MKMETMDYADPEPNTNVKGGYVSPPPPPN 84

BLAST of Cucsa.158230 vs. NCBI nr
Match: gi|567877159|ref|XP_006431169.1| (hypothetical protein CICLE_v10013233mg [Citrus clementina])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1

Query: 7  FSTLLLLSCFLLLSFTHGLKVEMIESLG-HGSNVRISPSLKGIGGKSRKMMIEIMDYADP 66
          F  LLL+S  LLLS  HG   ++ ES+    S V +  +    G + R+MM E+MDY DP
Sbjct: 6  FYKLLLVSVLLLLSLPHGFSRQLKESVEFEDSTVHVQEA----GAEPREMM-ELMDYKDP 65

Query: 67 GPNTNTRSGYLNPPPP 82
          GPNTN +SG++  PPP
Sbjct: 66 GPNTNPKSGFMLSPPP 76

BLAST of Cucsa.158230 vs. NCBI nr
Match: gi|763773712|gb|KJB40835.1| (hypothetical protein B456_007G079400 [Gossypium raimondii])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 1

Query: 7  FSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRI---SPSLKGIGGKSRKMMIEIMDYA 66
          F  LLLLS   +LSF+ GL  + +E+     NV     S  L+    K+R+MM EIMDY 
Sbjct: 6  FLKLLLLSMLFILSFSQGLGRKWMEN-----NVEFQDYSVQLEEFAEKAREMM-EIMDYK 65

Query: 67 DPGPNTNTRSGYL-NPPPPPSP 85
          +PGPNTN R+ Y+  PPP P P
Sbjct: 66 EPGPNTNPRTSYIFGPPPQPQP 81

BLAST of Cucsa.158230 vs. NCBI nr
Match: gi|728830510|gb|KHG09953.1| (hypothetical protein F383_14499 [Gossypium arboreum])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1

Query: 7  FSTLLLLSCFLLLSFTHGLKV-EMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADP 66
          F  LLLLS  LLLSF+ G  + +M+E++    +   +  L+     SR+M IEIMDY DP
Sbjct: 6  FLNLLLLSMLLLLSFSQGFSIRKMMETVEFEES---TAQLEENADTSREM-IEIMDYKDP 65

Query: 67 GPNTNTRSGYLNPPPP 82
          GPN N R+GY+  PPP
Sbjct: 66 GPNVNPRTGYIFSPPP 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KSB7_CUCSA3.0e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1[more]
A0A0A0LCS0_CUCSA4.9e-0843.82Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825030 PE=4 SV=1[more]
V4UXA1_9ROSI7.0e-0746.05Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013233mg PE=4 SV=1[more]
A0A0B0N658_GOSAR1.2e-0647.37Uncharacterized protein OS=Gossypium arboreum GN=F383_14499 PE=4 SV=1[more]
A0A0D2TB26_GOSRA1.2e-0646.34Uncharacterized protein OS=Gossypium raimondii GN=B456_007G079400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700197291|gb|KGN52468.1|4.3e-42100.00hypothetical protein Csa_5G636600 [Cucumis sativus][more]
gi|778685535|ref|XP_011652234.1|7.0e-0843.82PREDICTED: uncharacterized protein LOC105435001 [Cucumis sativus][more]
gi|567877159|ref|XP_006431169.1|1.0e-0646.05hypothetical protein CICLE_v10013233mg [Citrus clementina][more]
gi|763773712|gb|KJB40835.1|1.7e-0646.34hypothetical protein B456_007G079400 [Gossypium raimondii][more]
gi|728830510|gb|KHG09953.1|1.7e-0647.37hypothetical protein F383_14499 [Gossypium arboreum][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.158230.1Cucsa.158230.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.158230Melon (DHL92) v3.6.1cgymedB266
Cucsa.158230Melon (DHL92) v3.6.1cgymedB267
Cucsa.158230Melon (DHL92) v3.6.1cgymedB269
Cucsa.158230Silver-seed gourdcarcgyB0119
Cucsa.158230Silver-seed gourdcarcgyB0256
Cucsa.158230Silver-seed gourdcarcgyB0309
Cucsa.158230Silver-seed gourdcarcgyB0504
Cucsa.158230Cucumber (Chinese Long) v3cgycucB241
Cucsa.158230Cucumber (Chinese Long) v3cgycucB245
Cucsa.158230Watermelon (97103) v2cgywmbB266
Cucsa.158230Watermelon (97103) v2cgywmbB268
Cucsa.158230Watermelon (97103) v2cgywmbB269
Cucsa.158230Wax gourdcgywgoB307
Cucsa.158230Wax gourdcgywgoB309
Cucsa.158230Wax gourdcgywgoB311
Cucsa.158230Cucumber (Gy14) v1cgycgyB060
Cucsa.158230Cucumber (Gy14) v1cgycgyB096
Cucsa.158230Cucumber (Gy14) v1cgycgyB097
Cucsa.158230Cucumber (Gy14) v1cgycgyB098
Cucsa.158230Cucurbita maxima (Rimu)cgycmaB0437
Cucsa.158230Cucurbita maxima (Rimu)cgycmaB0438
Cucsa.158230Cucurbita maxima (Rimu)cgycmaB0439
Cucsa.158230Cucurbita maxima (Rimu)cgycmaB0440
Cucsa.158230Cucurbita maxima (Rimu)cgycmaB0441
Cucsa.158230Cucurbita maxima (Rimu)cgycmaB0442
Cucsa.158230Cucurbita moschata (Rifu)cgycmoB0436
Cucsa.158230Cucurbita moschata (Rifu)cgycmoB0438
Cucsa.158230Cucurbita moschata (Rifu)cgycmoB0439
Cucsa.158230Cucurbita moschata (Rifu)cgycmoB0441
Cucsa.158230Cucurbita moschata (Rifu)cgycmoB0443
Cucsa.158230Wild cucumber (PI 183967)cgycpiB233
Cucsa.158230Wild cucumber (PI 183967)cgycpiB234
Cucsa.158230Wild cucumber (PI 183967)cgycpiB235
Cucsa.158230Wild cucumber (PI 183967)cgycpiB237
Cucsa.158230Cucumber (Chinese Long) v2cgycuB227
Cucsa.158230Cucumber (Chinese Long) v2cgycuB228
Cucsa.158230Cucumber (Chinese Long) v2cgycuB231
Cucsa.158230Melon (DHL92) v3.5.1cgymeB266
Cucsa.158230Melon (DHL92) v3.5.1cgymeB267
Cucsa.158230Melon (DHL92) v3.5.1cgymeB269
Cucsa.158230Melon (DHL92) v3.5.1cgymeB270
Cucsa.158230Watermelon (Charleston Gray)cgywcgB266
Cucsa.158230Watermelon (Charleston Gray)cgywcgB269
Cucsa.158230Watermelon (Charleston Gray)cgywcgB270
Cucsa.158230Watermelon (Charleston Gray)cgywcgB271
Cucsa.158230Watermelon (97103) v1cgywmB280
Cucsa.158230Watermelon (97103) v1cgywmB281
Cucsa.158230Watermelon (97103) v1cgywmB282
Cucsa.158230Watermelon (97103) v1cgywmB284
Cucsa.158230Watermelon (97103) v1cgywmB286
Cucsa.158230Cucurbita pepo (Zucchini)cgycpeB0424
Cucsa.158230Cucurbita pepo (Zucchini)cgycpeB0425
Cucsa.158230Cucurbita pepo (Zucchini)cgycpeB0426
Cucsa.158230Bottle gourd (USVL1VR-Ls)cgylsiB256
Cucsa.158230Bottle gourd (USVL1VR-Ls)cgylsiB251
Cucsa.158230Bottle gourd (USVL1VR-Ls)cgylsiB253
Cucsa.158230Bottle gourd (USVL1VR-Ls)cgylsiB255