Carg04378 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04378
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_032 : 95074 .. 95702 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATACCTTCCTTTTACTTTCCCTTCACAACTCTCTCTCTAGCTGCCTTATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTCTTGGTACACAAACAAATTTCCCATGTTTTTCTTCTATGTTCACTCCCTTGATTCTCATAGTTCTTCATTTTGTCTTCAGGGTTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCAGTTCATCGCAAAAGGTAAGCTTTTTGGAAGCCTAGAAATGGAGTTTTTGGAAGATATTGGTGTAATTAACGAAGGGGTTTGTTTGTGTTGGCAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCATGAATCTCAAATAATGATTTCTTCTCTGTTCTTCGTTTCTCATATCATATTCTAACTTCCAAGTGTAAGGAATTGCACCTTTTGCTGTCAGATTTCCAGTAATTTGCTTCTAATATTCGATCAAATAATTACATTATTTTATGATTAATTATAACTTGGGTTTTGTGCCATACTAATAAACT

mRNA sequence

CATACCTTCCTTTTACTTTCCCTTCACAACTCTCTCTCTAGCTGCCTTATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTCTTGGGTTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCAGTTCATCGCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCATGAATCTCAAATAATGATTTCTTCTCTGTTCTTCGTTTCTCATATCATATTCTAACTTCCAAGTGTAAGGAATTGCACCTTTTGCTGTCAGATTTCCAGTAATTTGCTTCTAATATTCGATCAAATAATTACATTATTTTATGATTAATTATAACTTGGGTTTTGTGCCATACTAATAAACT

Coding sequence (CDS)

ATGGATCATCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTCTTGGGTTTGGCGTGGGAGCGATGGAAGCAGCGGCACATCCCGGCTATGATACCAGTTCATCGCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCCCCTTCTTCCCCTCCTCTGCCGCCCTCTTCATGA

Protein sequence

MDHPKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPPLPPSS

Homology

[Close]

BLAST of Carg04378 vs. NCBI nr
Match: XP_023527249.1 (uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4  PKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTN 63
          PKIFPILLLLFII GFGVGAMEAAAH G D SSSQKKSGGKPRKVMMEVMDYADPGPNTN
Sbjct: 2  PKIFPILLLLFIIFGFGVGAMEAAAHAGCDISSSQKKSGGKPRKVMMEVMDYADPGPNTN 61

Query: 64 TRSGYLT 71
          TRSGYLT
Sbjct: 62 TRSGYLT 68

[Close]

BLAST of Carg04378 vs. NCBI nr
Match: XP_023527257.1 (uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.6 bits (301), Expect = 2.5e-24
Identity = 62/67 (92.54%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 4  PKIFPILLLLFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTN 63
          PKIFPILLLLFII GFGVGAMEAAAH G D SSSQ KSGGKPRKVMMEVMDYADPGPNTN
Sbjct: 2  PKIFPILLLLFIIFGFGVGAMEAAAHAGCDISSSQ-KSGGKPRKVMMEVMDYADPGPNTN 61

Query: 64 TRSGYLT 71
          TRSGYLT
Sbjct: 62 TRSGYLT 67

[Close]

BLAST of Carg04378 vs. NCBI nr
Match: KGN52468.1 (hypothetical protein Csa_5G636600 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1  MDHPKIFPILLLL--FIILGFGVG----AMEAAAH-PGYDTSSSQKKSGGKPRKVMMEVM 60
          M HPK+F  LLLL  F++L F  G     +E+  H      S S K  GGK RK+M+E+M
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLTPPSSPPLP 79
          DYADPGPNTNTRSGYL PP  PP P
Sbjct: 61 DYADPGPNTNTRSGYLNPP-PPPSP 84

[Close]

BLAST of Carg04378 vs. TrEMBL
Match: tr|A0A0A0KSB7|A0A0A0KSB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-11
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1  MDHPKIFPILLLL--FIILGFGVG----AMEAAAH-PGYDTSSSQKKSGGKPRKVMMEVM 60
          M HPK+F  LLLL  F++L F  G     +E+  H      S S K  GGK RK+M+E+M
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLTPPSSPPLP 79
          DYADPGPNTNTRSGYL PP  PP P
Sbjct: 61 DYADPGPNTNTRSGYLNPP-PPPSP 84

The following BLAST results are available for this feature:

BLAST of Carg04378 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527249.1	2.7e-26	94.03	uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023527257.1	2.5e-24	92.54	uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KGN52468.1	9.4e-11	55.29	hypothetical protein Csa_5G636600 [Cucumis sativus]	[more]

BLAST of Carg04378 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg04378 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04378 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSB7\|A0A0A0KSB7_CUCSA	6.2e-11	55.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04378-RA	Carg04378-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04378	Csa5G636600	Cucumber (Chinese Long) v2	carcuB0708
Carg04378	MELO3C021993	Melon (DHL92) v3.5.1	carmeB0682
Carg04378	ClCG09G018150	Watermelon (Charleston Gray)	carwcgB0657
Carg04378	CSPI05G28990	Wild cucumber (PI 183967)	carcpiB0722
Carg04378	Cucsa.158230	Cucumber (Gy14) v1	carcgyB0763
Carg04378	CmaCh04G027680	Cucurbita maxima (Rimu)	carcmaB0967
Carg04378	CmoCh04G028990	Cucurbita moschata (Rifu)	carcmoB0940
Carg04378	Cp4.1LG01g22760	Cucurbita pepo (Zucchini)	carcpeB0965
Carg04378	CsGy5G028400	Cucumber (Gy14) v2	carcgybB0686
Carg04378	MELO3C021993.2	Melon (DHL92) v3.6.1	carmedB0694
Carg04378	CsaV3_5G038110	Cucumber (Chinese Long) v3	carcucB0725
Carg04378	Cla97C09G179560	Watermelon (97103) v2	carwmbB0714
Carg04378	Bhi06G000324	Wax gourd	carwgoB0801

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04378	Wax gourd	carwgoB0808
Carg04378	Silver-seed gourd	carcarB062
Carg04378	Silver-seed gourd	carcarB115
Carg04378	Silver-seed gourd	carcarB251
Carg04378	Silver-seed gourd	carcarB306
Carg04378	Silver-seed gourd	carcarB445
Carg04378	Cucumber (Gy14) v2	carcgybB0680
Carg04378	Cucumber (Gy14) v1	carcgyB0761
Carg04378	Cucumber (Gy14) v1	carcgyB0767
Carg04378	Cucurbita maxima (Rimu)	carcmaB0959
Carg04378	Cucurbita maxima (Rimu)	carcmaB0961
Carg04378	Cucurbita moschata (Rifu)	carcmoB0936
Carg04378	Cucurbita pepo (Zucchini)	carcpeB0962
Carg04378	Cucurbita pepo (Zucchini)	carcpeB0968
Carg04378	Wild cucumber (PI 183967)	carcpiB0715
Carg04378	Wild cucumber (PI 183967)	carcpiB0716
Carg04378	Cucumber (Chinese Long) v3	carcucB0718
Carg04378	Cucumber (Chinese Long) v3	carcucB0719
Carg04378	Melon (DHL92) v3.6.1	carmedB0701
Carg04378	Bottle gourd (USVL1VR-Ls)	carlsiB623
Carg04378	Bottle gourd (USVL1VR-Ls)	carlsiB625
Carg04378	Melon (DHL92) v3.5.1	carmeB0685
Carg04378	Melon (DHL92) v3.5.1	carmeB0688
Carg04378	Melon (DHL92) v3.6.1	carmedB0697
Carg04378	Watermelon (Charleston Gray)	carwcgB0662
Carg04378	Watermelon (97103) v1	carwmB0679
Carg04378	Watermelon (97103) v1	carwmB0684
Carg04378	Watermelon (97103) v2	carwmbB0709
Carg04378	Watermelon (97103) v2	carwmbB0712