Cp4.1LG01g22760.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g22760.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG01 : 20009913 .. 20010613 (+)
Sequence length	621

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAATAATAATNAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTATCCTCTCACTGGCTTAGTGCTTCATTAAATTCCTCTGGATCTGAACACTCCTCATACGTTCCTTTTACTTTCCCTTCACAACTCTCTCCCTCTCTCTAAAATAATGCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTTTTGGTACTCAAAACAATTTCCCATATTTTTCTTCTATTTTCCTTCCCTTGATTCTCATAGTTCTTCATTTTTTCTTCAGGATTTGGCGTGGGAGCGATGGAAGCAGCGGCACATGCAGGCTGTGATATCAGTTCATCCCAAAAGGTAAGCTTTTTGGAAGCCTAGAAATGGAGTTTTTGGAAGATATTGGTGTAATTAACGAAGGGGTTTGTTTGTGTTGGCAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCACCTTCTTCTCCCCCTCCGCCGCCCTCTTCATGAATCTCACATAATAATTTCTTCTCTGTTCTTCGTTTCTTATATCATATTCTAACTTCCAAGTGTAATTCATGCATGGAATTGCACCTTTTAGTGTCAAATTTCCAGTAATTTGCTTCTAATATTCGATCAAATAATTACATTATTTTATGATTAG

mRNA sequence

TAATAATAATAATNAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTATCCTCTCACTGGCTTAGTGCTTCATTAAATTCCTCTGGATCTGAACACTCCTCATACGTTCCTTTTACTTTCCCTTCACAACTCTCTCCCTCTCTCTAAAATAATGCCTAAAATCTTCCCAATTCTTCTCCTTCTCTTCATCATTTTTGGTACTCAAAACAATTTCCCATATTTTTCTTCTATTTTCCTTCCCTTGATTCTCATAGTTCTTCATTTTTTCTTCAGGATTTGGCGTGGGAGCGATGGAAGCAGCGGCACATGCAGGCTGTGATATCAGTTCATCCCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCACCTTCTTCTCCCCCTCCGCCGCCCTCTTCATGAATCTCACATAATAATTTCTTCTCTGTTCTTCGTTTCTTATATCATATTCTAACTTCCAAGTGTAATTCATGCATGGAATTGCACCTTTTAGTGTCAAATTTCCAGTAATTTGCTTCTAATATTCGATCAAATAATTACATTATTTTATGATTAG

Coding sequence (CDS)

ATGGAAGCAGCGGCACATGCAGGCTGTGATATCAGTTCATCCCAAAAGAAGAGTGGGGGCAAGCCCAGGAAAGTGATGATGGAAGTGATGGACTATGCAGATCCAGGCCCAAATACCAATACAAGAAGTGGCTATCTCACCCCACCTTCTTCTCCCCCTCCGCCGCCCTCTTCATGA

Protein sequence

MEAAAHAGCDISSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPPPPPSS

Homology

[Close]

BLAST of Cp4.1LG01g22760.1 vs. TrEMBL
Match: A0A0A0KSB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-08
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1


Query: 11 ISSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPPPPPSS 59
          IS S K  GGK RK+M+E+MDYADPGPNTNTRSGYL PP  PPP P++
Sbjct: 41 ISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPP--PPPSPAT 86

[Close]

BLAST of Cp4.1LG01g22760.1 vs. NCBI nr
Match: gi|700197291|gb|KGN52468.1| (hypothetical protein Csa_5G636600 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-08
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1


Query: 11 ISSSQKKSGGKPRKVMMEVMDYADPGPNTNTRSGYLTPPSSPPPPPSS 59
          IS S K  GGK RK+M+E+MDYADPGPNTNTRSGYL PP  PPP P++
Sbjct: 41 ISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPP--PPPSPAT 86

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g22760.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g22760.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSB7_CUCSA	4.2e-08	70.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g22760.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g22760.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197291\|gb\|KGN52468.1\|	6.1e-08	70.83	hypothetical protein Csa_5G636600 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g22760	Cp4.1LG01g22760	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g22760.1:five_prime_utr:001	Cp4.1LG01g22760.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g22760.1:cds:002	Cp4.1LG01g22760.1:cds:002	CDS
Cp4.1LG01g22760.1:cds:001	Cp4.1LG01g22760.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g22760.1:three_prime_utr:001	Cp4.1LG01g22760.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g22760.1	Cp4.1LG01g22760.1-protein	polypeptide