Cp4.1LG01g22010 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g22010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 20489954 .. 20490217 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAACCTTTTCAAGCTCTCCAAATGCATCTCTGTTTTTGTTCTCATTCTCTCCCTCTCTGTTTCTTCTTCTTCTTCCGCCAGATTGTTGCGCGATCTTTCTCTCTCCCCCGCCGCCTTGCCGGACCTGAAACTTGACACTCCGGCGGATCCTACGACGGCGCTGGCAGTGGAGTATGGGGCTTTGCTTCTTGGGTTTCTGCCGAAGGGGGGAATTCCGCCGTCGGGGCCGAGCAAAGGGACCAACAACCTCAACAGTTAG

mRNA sequence

ATGGCGAACCTTTTCAAGCTCTCCAAATGCATCTCTGTTTTTGTTCTCATTCTCTCCCTCTCTGTTTCTTCTTCTTCTTCCGCCAGATTGTTGCGCGATCTTTCTCTCTCCCCCGCCGCCTTGCCGGACCTGAAACTTGACACTCCGGCGGATCCTACGACGGCGCTGGCAGTGGAGTATGGGGCTTTGCTTCTTGGGTTTCTGCCGAAGGGGGGAATTCCGCCGTCGGGGCCGAGCAAAGGGACCAACAACCTCAACAGTTAG

Coding sequence (CDS)

ATGGCGAACCTTTTCAAGCTCTCCAAATGCATCTCTGTTTTTGTTCTCATTCTCTCCCTCTCTGTTTCTTCTTCTTCTTCCGCCAGATTGTTGCGCGATCTTTCTCTCTCCCCCGCCGCCTTGCCGGACCTGAAACTTGACACTCCGGCGGATCCTACGACGGCGCTGGCAGTGGAGTATGGGGCTTTGCTTCTTGGGTTTCTGCCGAAGGGGGGAATTCCGCCGTCGGGGCCGAGCAAAGGGACCAACAACCTCAACAGTTAG

Protein sequence

MANLFKLSKCISVFVLILSLSVSSSSSARLLRDLSLSPAALPDLKLDTPADPTTALAVEYGALLLGFLPKGGIPPSGPSKGTNNLNS
Homology
[Close]
BLAST of Cp4.1LG01g22010 vs. TrEMBL
Match: A0A0A0K7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-15
Identity = 60/89 (67.42%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 1  MANLFK-LSKCISVFVLILSLSVSSSSSARLLRDLSLSPAALPDLKLDTPADPTTALAVE 60
          MANLFK L     +F LIL +SVSSSS ARLLR  SLSPA    LKLD PADP      E
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSS-ARLLRQQSLSPA----LKLDIPADPAAPTMTE 60

Query: 61 YGALLLGFLPKGG-IPPSGPSKGTNNLNS 88
          Y +LLLGFLPKGG IPPSGPSKGTNN N+
Sbjct: 61 YESLLLGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]
BLAST of Cp4.1LG01g22010 vs. NCBI nr
Match: gi|700190626|gb|KGN45830.1| (hypothetical protein Csa_6G014510 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-15
Identity = 60/89 (67.42%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 1  MANLFK-LSKCISVFVLILSLSVSSSSSARLLRDLSLSPAALPDLKLDTPADPTTALAVE 60
          MANLFK L     +F LIL +SVSSSS ARLLR  SLSPA    LKLD PADP      E
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSS-ARLLRQQSLSPA----LKLDIPADPAAPTMTE 60

Query: 61 YGALLLGFLPKGG-IPPSGPSKGTNNLNS 88
          Y +LLLGFLPKGG IPPSGPSKGTNN N+
Sbjct: 61 YESLLLGFLPKGGSIPPSGPSKGTNNFNT 84

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g22010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g22010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7U2_CUCSA3.2e-1567.42Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1[more]
BLAST of Cp4.1LG01g22010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g22010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190626|gb|KGN45830.1|4.5e-1567.42hypothetical protein Csa_6G014510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g22010.1Cp4.1LG01g22010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g22010CmaCh15G001610Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g22010CmaCh04G028680Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g22010CmoCh15G001750Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g22010CmoCh04G029970Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g22010CsaV3_6G002250Cucumber (Chinese Long) v3cpecucB0569
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g22010Cp4.1LG13g07540Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g22010Wax gourdcpewgoB0525
Cp4.1LG01g22010Wax gourdcpewgoB0546
Cp4.1LG01g22010Cucurbita pepo (Zucchini)cpecpeB074
Cp4.1LG01g22010Cucurbita pepo (Zucchini)cpecpeB376
Cp4.1LG01g22010Cucumber (Gy14) v1cgycpeB0344
Cp4.1LG01g22010Cucumber (Gy14) v1cgycpeB0861
Cp4.1LG01g22010Cucurbita moschata (Rifu)cmocpeB614
Cp4.1LG01g22010Wild cucumber (PI 183967)cpecpiB412
Cp4.1LG01g22010Wild cucumber (PI 183967)cpecpiB461
Cp4.1LG01g22010Cucumber (Chinese Long) v2cpecuB413
Cp4.1LG01g22010Cucumber (Chinese Long) v2cpecuB460
Cp4.1LG01g22010Bottle gourd (USVL1VR-Ls)cpelsiB328
Cp4.1LG01g22010Bottle gourd (USVL1VR-Ls)cpelsiB339
Cp4.1LG01g22010Watermelon (Charleston Gray)cpewcgB355
Cp4.1LG01g22010Watermelon (Charleston Gray)cpewcgB383
Cp4.1LG01g22010Watermelon (97103) v1cpewmB445
Cp4.1LG01g22010Watermelon (97103) v1cpewmB462
Cp4.1LG01g22010Melon (DHL92) v3.5.1cpemeB397
Cp4.1LG01g22010Cucumber (Gy14) v2cgybcpeB514
Cp4.1LG01g22010Cucumber (Gy14) v2cgybcpeB798
Cp4.1LG01g22010Melon (DHL92) v3.6.1cpemedB462
Cp4.1LG01g22010Silver-seed gourdcarcpeB0034
Cp4.1LG01g22010Silver-seed gourdcarcpeB0374
Cp4.1LG01g22010Silver-seed gourdcarcpeB0892
Cp4.1LG01g22010Cucumber (Chinese Long) v3cpecucB0509