CmaCh15G001610 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G001610
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr15 : 750449 .. 750694 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGCTCTTCAAAGTCCCAAAATTGTTCTTTGTTTTTGCTCTGATTCTTTTCATCTCTGCTTCTTCTTCTTCAGCCAGATTGTTGCGCGATCAATCTCTTTCCGCCGCCGTGCCGGAGTTGAAACTTGATATCCCGGCGGCTCTTTCGAGGGAGTATGGGCCTCTGCTTCTTGGGTTTCTGCCGAAGGGGAGGATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

mRNA sequence

ATGGCGAAGCTCTTCAAAGTCCCAAAATTGTTCTTTGTTTTTGCTCTGATTCTTTTCATCTCTGCTTCTTCTTCTTCAGCCAGATTGTTGCGCGATCAATCTCTTTCCGCCGCCGTGCCGGAGTTGAAACTTGATATCCCGGCGGCTCTTTCGAGGGAGTATGGGCCTCTGCTTCTTGGGTTTCTGCCGAAGGGGAGGATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

Coding sequence (CDS)

ATGGCGAAGCTCTTCAAAGTCCCAAAATTGTTCTTTGTTTTTGCTCTGATTCTTTTCATCTCTGCTTCTTCTTCTTCAGCCAGATTGTTGCGCGATCAATCTCTTTCCGCCGCCGTGCCGGAGTTGAAACTTGATATCCCGGCGGCTCTTTCGAGGGAGTATGGGCCTCTGCTTCTTGGGTTTCTGCCGAAGGGGAGGATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

Protein sequence

MAKLFKVPKLFFVFALILFISASSSSARLLRDQSLSAAVPELKLDIPAALSREYGPLLLGFLPKGRIPPSGPSKGTNDFNT
Homology
[Close]
BLAST of CmaCh15G001610 vs. TrEMBL
Match: A0A0A0K7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-16
Identity = 60/87 (68.97%), Postives = 63/87 (72.41%), Query Frame = 1 

Query: 1  MAKLFK-VPKLFFVFALILFISASSSSARLLRDQSLSAAVPELKLDIP----AALSREYG 60
          MA LFK +P  FF+F LIL IS SSSSARLLR QSLS   P LKLDIP    A    EY 
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS---PALKLDIPADPAAPTMTEYE 60

Query: 61 PLLLGFLPK-GRIPPSGPSKGTNDFNT 82
           LLLGFLPK G IPPSGPSKGTN+FNT
Sbjct: 61 SLLLGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]
BLAST of CmaCh15G001610 vs. NCBI nr
Match: gi|700190626|gb|KGN45830.1| (hypothetical protein Csa_6G014510 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 60/87 (68.97%), Postives = 63/87 (72.41%), Query Frame = 1 

Query: 1  MAKLFK-VPKLFFVFALILFISASSSSARLLRDQSLSAAVPELKLDIP----AALSREYG 60
          MA LFK +P  FF+F LIL IS SSSSARLLR QSLS   P LKLDIP    A    EY 
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS---PALKLDIPADPAAPTMTEYE 60

Query: 61 PLLLGFLPK-GRIPPSGPSKGTNDFNT 82
           LLLGFLPK G IPPSGPSKGTN+FNT
Sbjct: 61 SLLLGFLPKGGSIPPSGPSKGTNNFNT 84

The following BLAST results are available for this feature:
BLAST of CmaCh15G001610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh15G001610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7U2_CUCSA1.6e-1668.97Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1[more]
BLAST of CmaCh15G001610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh15G001610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190626|gb|KGN45830.1|2.2e-1668.97hypothetical protein Csa_6G014510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G001610.1CmaCh15G001610.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh15G001610CmoCh15G001750Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G001610CmoCh04G029970Cucurbita moschata (Rifu)cmacmoB308
CmaCh15G001610Lsi03G002690Bottle gourd (USVL1VR-Ls)cmalsiB276
CmaCh15G001610Cp4.1LG01g22010Cucurbita pepo (Zucchini)cmacpeB317
CmaCh15G001610Cp4.1LG13g07540Cucurbita pepo (Zucchini)cmacpeB305
CmaCh15G001610MELO3C020002.2Melon (DHL92) v3.6.1cmamedB312
CmaCh15G001610CsaV3_6G002250Cucumber (Chinese Long) v3cmacucB0363
CmaCh15G001610Cla97C11G212650Watermelon (97103) v2cmawmbB296
CmaCh15G001610Bhi04G001842Wax gourdcmawgoB0397
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh15G001610CmaCh04G028680Cucurbita maxima (Rimu)cmacmaB324
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G001610Wax gourdcmawgoB0402
CmaCh15G001610Cucurbita maxima (Rimu)cmacmaB326
CmaCh15G001610Cucumber (Gy14) v1cgycmaB0353
CmaCh15G001610Cucumber (Gy14) v1cgycmaB0903
CmaCh15G001610Cucurbita moschata (Rifu)cmacmoB300
CmaCh15G001610Cucurbita moschata (Rifu)cmacmoB315
CmaCh15G001610Wild cucumber (PI 183967)cmacpiB314
CmaCh15G001610Cucumber (Chinese Long) v2cmacuB309
CmaCh15G001610Melon (DHL92) v3.5.1cmameB272
CmaCh15G001610Watermelon (Charleston Gray)cmawcgB252
CmaCh15G001610Watermelon (97103) v1cmawmB284
CmaCh15G001610Cucurbita pepo (Zucchini)cmacpeB302
CmaCh15G001610Bottle gourd (USVL1VR-Ls)cmalsiB270
CmaCh15G001610Bottle gourd (USVL1VR-Ls)cmalsiB285
CmaCh15G001610Cucumber (Gy14) v2cgybcmaB490
CmaCh15G001610Cucumber (Gy14) v2cgybcmaB741
CmaCh15G001610Melon (DHL92) v3.6.1cmamedB324
CmaCh15G001610Silver-seed gourdcarcmaB0030
CmaCh15G001610Silver-seed gourdcarcmaB0362
CmaCh15G001610Silver-seed gourdcarcmaB0943
CmaCh15G001610Cucumber (Chinese Long) v3cmacucB0339
CmaCh15G001610Cucumber (Chinese Long) v3cmacucB0350
CmaCh15G001610Watermelon (97103) v2cmawmbB303
CmaCh15G001610Watermelon (97103) v2cmawmbB315