Cp4.1LG13g07540 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g07540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG13 : 8529315 .. 8529560 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGCTCTTCAAAGTCCCAAAATTGTTCTTTCTTGTTGCTCTGATTCTTTTCATCTCTGCTTCTTCTTCTTCAGCCAGATTGTTGCGCGATCAATCTCTTTCCGCCGCCGTGCCGGAGTTGAAACTTGATATCCCGGCGGCTCTTTCGAGGGAGTATGGGCCTCTGCTTCTTGGGTTTCTGCCGAAGGGGAGAATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

mRNA sequence

ATGGCGAAGCTCTTCAAAGTCCCAAAATTGTTCTTTCTTGTTGCTCTGATTCTTTTCATCTCTGCTTCTTCTTCTTCAGCCAGATTGTTGCGCGATCAATCTCTTTCCGCCGCCGTGCCGGAGTTGAAACTTGATATCCCGGCGGCTCTTTCGAGGGAGTATGGGCCTCTGCTTCTTGGGTTTCTGCCGAAGGGGAGAATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

Coding sequence (CDS)

ATGGCGAAGCTCTTCAAAGTCCCAAAATTGTTCTTTCTTGTTGCTCTGATTCTTTTCATCTCTGCTTCTTCTTCTTCAGCCAGATTGTTGCGCGATCAATCTCTTTCCGCCGCCGTGCCGGAGTTGAAACTTGATATCCCGGCGGCTCTTTCGAGGGAGTATGGGCCTCTGCTTCTTGGGTTTCTGCCGAAGGGGAGAATTCCGCCGTCGGGACCGAGCAAAGGGACCAACGACTTCAACACTTAG

Protein sequence

MAKLFKVPKLFFLVALILFISASSSSARLLRDQSLSAAVPELKLDIPAALSREYGPLLLGFLPKGRIPPSGPSKGTNDFNT
Homology
[Close]
BLAST of Cp4.1LG13g07540 vs. TrEMBL
Match: A0A0A0K7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.9e-16
Identity = 60/87 (68.97%), Postives = 62/87 (71.26%), Query Frame = 1 

Query: 1  MAKLFK-VPKLFFLVALILFISASSSSARLLRDQSLSAAVPELKLDIP----AALSREYG 60
          MA LFK +P  FFL  LIL IS SSSSARLLR QSLS   P LKLDIP    A    EY 
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS---PALKLDIPADPAAPTMTEYE 60

Query: 61 PLLLGFLPK-GRIPPSGPSKGTNDFNT 82
           LLLGFLPK G IPPSGPSKGTN+FNT
Sbjct: 61 SLLLGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]
BLAST of Cp4.1LG13g07540 vs. NCBI nr
Match: gi|700190626|gb|KGN45830.1| (hypothetical protein Csa_6G014510 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 8.5e-16
Identity = 60/87 (68.97%), Postives = 62/87 (71.26%), Query Frame = 1 

Query: 1  MAKLFK-VPKLFFLVALILFISASSSSARLLRDQSLSAAVPELKLDIP----AALSREYG 60
          MA LFK +P  FFL  LIL IS SSSSARLLR QSLS   P LKLDIP    A    EY 
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS---PALKLDIPADPAAPTMTEYE 60

Query: 61 PLLLGFLPK-GRIPPSGPSKGTNDFNT 82
           LLLGFLPK G IPPSGPSKGTN+FNT
Sbjct: 61 SLLLGFLPKGGSIPPSGPSKGTNNFNT 84

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g07540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g07540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7U2_CUCSA5.9e-1668.97Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1[more]
BLAST of Cp4.1LG13g07540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g07540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190626|gb|KGN45830.1|8.5e-1668.97hypothetical protein Csa_6G014510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g07540.1Cp4.1LG13g07540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g07540CmaCh15G001610Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g07540CmoCh15G001750Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g07540Lsi03G002690Bottle gourd (USVL1VR-Ls)cpelsiB143
Cp4.1LG13g07540MELO3C020002.2Melon (DHL92) v3.6.1cpemedB197
Cp4.1LG13g07540CsaV3_6G002250Cucumber (Chinese Long) v3cpecucB0238
Cp4.1LG13g07540Bhi04G001842Wax gourdcpewgoB0247
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g07540Cp4.1LG01g22010Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g07540Cucumber (Gy14) v2cgybcpeB483
Cp4.1LG13g07540Cucumber (Gy14) v2cgybcpeB741
Cp4.1LG13g07540Silver-seed gourdcarcpeB0031
Cp4.1LG13g07540Silver-seed gourdcarcpeB0366
Cp4.1LG13g07540Silver-seed gourdcarcpeB0934
Cp4.1LG13g07540Cucumber (Chinese Long) v3cpecucB0208
Cp4.1LG13g07540Cucumber (Chinese Long) v3cpecucB0233
Cp4.1LG13g07540Wax gourdcpewgoB0261
Cp4.1LG13g07540Cucurbita pepo (Zucchini)cpecpeB202
Cp4.1LG13g07540Cucumber (Gy14) v1cgycpeB0859
Cp4.1LG13g07540Cucurbita maxima (Rimu)cmacpeB705
Cp4.1LG13g07540Cucurbita maxima (Rimu)cmacpeB709
Cp4.1LG13g07540Cucurbita moschata (Rifu)cmocpeB657
Cp4.1LG13g07540Cucurbita moschata (Rifu)cmocpeB662
Cp4.1LG13g07540Wild cucumber (PI 183967)cpecpiB199
Cp4.1LG13g07540Cucumber (Chinese Long) v2cpecuB198
Cp4.1LG13g07540Bottle gourd (USVL1VR-Ls)cpelsiB149
Cp4.1LG13g07540Watermelon (Charleston Gray)cpewcgB159
Cp4.1LG13g07540Watermelon (Charleston Gray)cpewcgB179
Cp4.1LG13g07540Watermelon (97103) v1cpewmB177
Cp4.1LG13g07540Watermelon (97103) v1cpewmB195
Cp4.1LG13g07540Melon (DHL92) v3.5.1cpemeB165