CmoCh04G029970 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G029970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 21105774 .. 21106037 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAACCTTTTCAAGCTCTCCAAATTCATCTCTGTTTTAGCTCTCATTCTTTCCCTCTCTGTTTCTTCTTCTTCTTCCGCCAGATTATTGCGCGATCTCTCTCTCTCCCCCGCCGCCTTGCCGGACCTGAAACTTGACACTCCGGCGGATCCTACGACGGCGCTGGCGGTGGAGTATGGGGCTTTGCTTCTTGGGTTTCTACCGAAGGGGGGAATTCCGCCGTCGGGGCCGAGCAAAGGGACCAACAACCTCAACAGTTAA

mRNA sequence

ATGGCGAACCTTTTCAAGCTCTCCAAATTCATCTCTGTTTTAGCTCTCATTCTTTCCCTCTCTGTTTCTTCTTCTTCTTCCGCCAGATTATTGCGCGATCTCTCTCTCTCCCCCGCCGCCTTGCCGGACCTGAAACTTGACACTCCGGCGGATCCTACGACGGCGCTGGCGGTGGAGTATGGGGCTTTGCTTCTTGGGTTTCTACCGAAGGGGGGAATTCCGCCGTCGGGGCCGAGCAAAGGGACCAACAACCTCAACAGTTAA

Coding sequence (CDS)

ATGGCGAACCTTTTCAAGCTCTCCAAATTCATCTCTGTTTTAGCTCTCATTCTTTCCCTCTCTGTTTCTTCTTCTTCTTCCGCCAGATTATTGCGCGATCTCTCTCTCTCCCCCGCCGCCTTGCCGGACCTGAAACTTGACACTCCGGCGGATCCTACGACGGCGCTGGCGGTGGAGTATGGGGCTTTGCTTCTTGGGTTTCTACCGAAGGGGGGAATTCCGCCGTCGGGGCCGAGCAAAGGGACCAACAACCTCAACAGTTAA
Homology
[Close]
BLAST of CmoCh04G029970 vs. TrEMBL
Match: A0A0A0K7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-15
Identity = 60/89 (67.42%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 1  MANLFK-LSKFISVLALILSLSVSSSSSARLLRDLSLSPAALPDLKLDTPADPTTALAVE 60
          MANLFK L  F  +  LIL +SVSSSS ARLLR  SLSPA    LKLD PADP      E
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSS-ARLLRQQSLSPA----LKLDIPADPAAPTMTE 60

Query: 61 YGALLLGFLPKGG-IPPSGPSKGTNNLNS 88
          Y +LLLGFLPKGG IPPSGPSKGTNN N+
Sbjct: 61 YESLLLGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]
BLAST of CmoCh04G029970 vs. NCBI nr
Match: gi|700190626|gb|KGN45830.1| (hypothetical protein Csa_6G014510 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-15
Identity = 60/89 (67.42%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 1  MANLFK-LSKFISVLALILSLSVSSSSSARLLRDLSLSPAALPDLKLDTPADPTTALAVE 60
          MANLFK L  F  +  LIL +SVSSSS ARLLR  SLSPA    LKLD PADP      E
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSS-ARLLRQQSLSPA----LKLDIPADPAAPTMTE 60

Query: 61 YGALLLGFLPKGG-IPPSGPSKGTNNLNS 88
          Y +LLLGFLPKGG IPPSGPSKGTNN N+
Sbjct: 61 YESLLLGFLPKGGSIPPSGPSKGTNNFNT 84

The following BLAST results are available for this feature:
BLAST of CmoCh04G029970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G029970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7U2_CUCSA3.2e-1567.42Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014510 PE=4 SV=1[more]
BLAST of CmoCh04G029970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G029970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190626|gb|KGN45830.1|4.5e-1567.42hypothetical protein Csa_6G014510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G029970.1CmoCh04G029970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G029970CmaCh15G001610Cucurbita maxima (Rimu)cmacmoB308
CmoCh04G029970CmaCh04G028680Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G029970Cp4.1LG01g22010Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G029970CsaV3_6G002250Cucumber (Chinese Long) v3cmocucB0899
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G029970CmoCh15G001750Cucurbita moschata (Rifu)cmocmoB261
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G029970Cucumber (Chinese Long) v3cmocucB0838
CmoCh04G029970Watermelon (97103) v2cmowmbB697
CmoCh04G029970Watermelon (97103) v2cmowmbB723
CmoCh04G029970Wax gourdcmowgoB0857
CmoCh04G029970Wax gourdcmowgoB0879
CmoCh04G029970Cucurbita moschata (Rifu)cmocmoB449
CmoCh04G029970Cucurbita moschata (Rifu)cmocmoB466
CmoCh04G029970Cucumber (Gy14) v1cgycmoB0350
CmoCh04G029970Cucumber (Gy14) v1cgycmoB0903
CmoCh04G029970Cucurbita maxima (Rimu)cmacmoB659
CmoCh04G029970Cucurbita maxima (Rimu)cmacmoB734
CmoCh04G029970Cucurbita maxima (Rimu)cmacmoB736
CmoCh04G029970Wild cucumber (PI 183967)cmocpiB719
CmoCh04G029970Wild cucumber (PI 183967)cmocpiB768
CmoCh04G029970Cucumber (Chinese Long) v2cmocuB709
CmoCh04G029970Cucumber (Chinese Long) v2cmocuB759
CmoCh04G029970Melon (DHL92) v3.5.1cmomeB668
CmoCh04G029970Melon (DHL92) v3.5.1cmomeB701
CmoCh04G029970Watermelon (Charleston Gray)cmowcgB621
CmoCh04G029970Watermelon (Charleston Gray)cmowcgB650
CmoCh04G029970Watermelon (97103) v1cmowmB714
CmoCh04G029970Watermelon (97103) v1cmowmB730
CmoCh04G029970Cucurbita pepo (Zucchini)cmocpeB654
CmoCh04G029970Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G029970Bottle gourd (USVL1VR-Ls)cmolsiB629
CmoCh04G029970Bottle gourd (USVL1VR-Ls)cmolsiB645
CmoCh04G029970Cucumber (Gy14) v2cgybcmoB525
CmoCh04G029970Cucumber (Gy14) v2cgybcmoB816
CmoCh04G029970Melon (DHL92) v3.6.1cmomedB756
CmoCh04G029970Silver-seed gourdcarcmoB0033
CmoCh04G029970Silver-seed gourdcarcmoB0370
CmoCh04G029970Silver-seed gourdcarcmoB0863
CmoCh04G029970Silver-seed gourdcarcmoB0925