Cp4.1LG01g19250 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g19250
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cytochrome b-c1 complex subunit Rieske, mitochondrial
Location	Cp4.1LG01 : 16443948 .. 16447648 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTATATAAAAAAAAAAAAAAAAAAAAATNAAAAAAGCTTAAAGCTTACCGCGTAGGCAAACACAAGGCAAGGTCAAATTTCTCCTGCAAATTGGGGAAAATAAAGCCGGTTCTGTCGCCTCCACTCCAATACCCCATATCCCTCGAACCGCTTCTTCCCAATTCATTTTTCGCCGCGGAAGGCTTCGATTGTTCCCCGTCGAAGATGCTGAGGGTTGCGGCTCGAAGGCTCTCTTCGCTCCCTTCTTCCCATTTCAGGCCCTCTATTGCCTCTTCCTTGCCCGGTTCTCATAAGATCGCTGATGGCGGTGATTCTGCCCCATCCAATGATTTCAGATCCGTCAGCTCTTTCAATACCTTCGCTTTTGGATCCAACTTTGCGCCTAGTTGTCGAGGTTACATTTTGCTCCCCTCTTCTCTGAAATACTTTTGTTCTCTCTGCGCGTAGTTGATTTATGGCGTTTTTTAGGGTTTGTTTTGGTGGAGATGTGATGTCTTTTGTTGAAATTTGTTTTTGGGAAGGGAAATCCTTATTTAGTATTTGACTTGTAGTTTTGTTACTTGCTTGTGTTGCTTTAATCATGTTTAGCCGTGGATGGGGATTGATAATGGTCTTTACCGATCTACTGTTTAGTTGCATTTCATGATGATGAATCATGTTTTGCGTACTCATTTTTCATTGTAAATTTGAGGGTTGTTTATGGGATTTATGTTGGGGCATCATATCACTTAGTCGAATCAATCACTTCCTATTGGAGTTCATGTTTGAATCTTCCAGAGTTGGTTTTCAAAGCTCTTAACTTGTTGTTACCATCATGTTTGCATATTCGTTTCTCATTCTGGAAATATTGTGAAAACGTGAAATGTTATTTAAAAACCGTATTTTCTTAGCAATACGATGATATCTCTCTGTTGAAGCAGCCCCTTTTCGTTTATTTTAGAATCTTTTCACCGTTGCTCTACAAATTTTACAAAATTTTTAACATTTTTTTTTTCTTGTAAATATTTTTTATTCTTTCTTTCATTTTCCTTTCATTGAAAAGTGTGATTTTAGCCCATTCGAGTGCATAAGTTTTAAGTGTGAGTTTTCTTTTTTACTTTTCCGTTAAAACAAATTAGTTTAAGGTTTTCTGTATTATCTGTACCGAATAAAGTTCAGAGCATTCGTCCATTTTAAGCACTCACCCATTCTTGATAAACGGATGATATGCAACATTGTAGAGGGAGTATAGTAATTATTTTCCTTACAAAAGAACATTCAGTGCACTAATTCATTTTTAATAAACGGATGTTATACGGGCTGCAGTGATTGGGGTGTAGTTTATTGTTATTGGAAGAATGGATTTGTTATTTACAAACTTTAAGCAGTTGTCTTTTTTTTTTTTTTATTAATTTTTTTTTTCTCCCGTTTGGATTGTATTTCTTTCTTTCTCATTTTTTATTATCATATCTTGATCAACAGATAGTAGGTTGCAAACAAAACTTGGCATTGAAAACTTTTTTTTTTTTTTGAGATGAGAAACAACTTTTTATTGATACCTAAGGAGTTACGATGGTACTAAAATATTAGTAATAATAATAAAAAAAAAACTCCATTTAGGAGCTTGTTCAAAGGAATCTAGCTACTTGAAATAACATTTACAAAAGGGCCAAGATTTTGAGAACTTAGGCACCTAAAAAAGAAGCATTTGTTATAAACACCAAAGATCGGGCATTTCCATAGTCCACACCCTTATGGACCATACAATTAGAAAGACGAAAGAAAATAAATGAAAGTCAAAACCAGCAAGAGCAGGTGACTCAAGGTATGCCATTGCCCTTCTCTCTTGACAGACACTTGAGACTTCGTTGGGGGAGGTCGAGTTTCATAAACAAGGAGAAGAATTTATAGTTATTAAAAGTTTGTATTACTTGGTTGAACAGCATTGCCTTTGGGCGTTGAAATTCTATATTAGCTCATTAGCCATGATGTGATCATGGGCTTATTGTGGTCTTTTGGTTTGTGTTATAGAGGTCTATGAAGTTGTGTTCCATGGTTGCTAGTGCCAATTCTAATAGGCTCGTATCAGGCCATAAGAACCTCGTAGGTGCCTTGTAGGTGCAAAATAGTGCTAGGAAGAACCATCCTCAGCCTATCATCCTACACCTTAGCAATGGTTTCATACAAGCTAGTTCCAAGCTGATTGGTATATAATCCAAATCTCTCGTGATCAAAAGCCAATGGAACCATCATGGCTGAGAACCTTACTATTGATTGTTATCAAAGCTGAAATCATCGAGCCTTTAACCTTTTCTACCCTTCTCTAGAATAGGATGCTGATTAAAACCTTCCTCAAACCTTTATGCGACTGATTACTGAGTTTTATTTCCTAATCTTGTATGTAAGTCTTCAATAGAAATGTCGGCCAGAAATTTGTTAGCACTCTCTGGAAACAGTTTGAGGCCCGCTTATAACTTCCCCTGGAGAATGTGTACTAGCATGTTATTATTTGGTATTGTGTTTGTTTGGTACTAATTAAATGAAAAAGGGCTTCAAAACTGAATGGTTTGGACTCTGACTTTAACAATCAGTAGGTTTAGATGTTGAACATTCTGCCCAAGGCAATTGATTGGATGACTGCATTTCAATCGTATTTTGTGATTCAGCTCTTTTGTTATGAATGATTCTTTCTTTCTCCTGTAGTGAAATTTTATGATTGAATAGAATAACTCTTTGCTAGGTTTCGCTTCTGATGCCTTGACTTCAATGGGCGAAAACAACTTAGTTCCAGATGTTCCTGCAACTGTTGCAGCCGTTAAGAACCCTACTTCAAAGATAGTGTATGATGAATACAATCATGAGCGATTTCCTCCGGGTGATCCCAGCAAGCGTGCATTTGCCTATTTTGTCTTGTCAGGCGGTCGGTTTGTCTATGCTTCTTTGATTCGCCTCCTTGTTCTCAAGTTTGTTCTTAGCATGTCAGCCAGTAAGGATGTTCTTGCCCTGGCCTCACTTGAGGTTGACCTCTCAAGCATTGAGCCTGGTTCTACTGTGACGGTTAAGTGGCGTGGAAAACCAGTCTTCATCAGGCGACGAACTGAAGATGATATTAAGATAGCAAATAGCGTCGACATTGGATCTCTTCGTGACCCACAGCAGGATGTCGAAAGAGTCAAGGATCCAGAATGGCTTATCGTGATTGGTGTTTGCACACATCTTGGTTGCATTCCCTTGCCAAATGCTGGTGATTTTGGTGGGTGGTTTTGCCCGTGCCATGGTTCCCATTACGACATCTCCGGTAGGATCCGTAAAGGACCAGCGCCATACAATTTGGAGGTACCCACCTATACCTTTTTGGATGAAAACAAGCTTTTGATTGGTTAAGAAATCAAACTCTTTTTCTGGGTTTGTAGTAGTGGTTTGGAACAATCATCTATGATAATGTCTTGAAGATTTGTTGCAGGCATTTTATTATTTTTCTACTCAAATTCTGATTTGATGTTTATGTTATGAGAAAACTGTAACTCCCGTATATTGGTGGTGCATGAATGCATCTGAATAAGTTGCTTTGCTTGAATGGGGTGTTTCCCCCATGAAGTAAGATCTTCTGATTTTGGGAATAGACTTGATAGTGAAATGGAAACTAAAATTTCTTTGTATGATTTGTATCTACAATTGCTATACAAGTCTACAAAATTTTCTTCAGTTGAGCAGATTT

mRNA sequence

TTTATTATATAAAAAAAAAAAAAAAAAAAAATNAAAAAAGCTTAAAGCTTACCGCGTAGGCAAACACAAGGCAAGGTCAAATTTCTCCTGCAAATTGGGGAAAATAAAGCCGGTTCTGTCGCCTCCACTCCAATACCCCATATCCCTCGAACCGCTTCTTCCCAATTCATTTTTCGCCGCGGAAGGCTTCGATTGTTCCCCGTCGAAGATGCTGAGGGTTGCGGCTCGAAGGCTCTCTTCGCTCCCTTCTTCCCATTTCAGGCCCTCTATTGCCTCTTCCTTGCCCGGTTCTCATAAGATCGCTGATGGCGGTGATTCTGCCCCATCCAATGATTTCAGATCCGTCAGCTCTTTCAATACCTTCGCTTTTGGATCCAACTTTGCGCCTAGTTGTCGAGGTTTCGCTTCTGATGCCTTGACTTCAATGGGCGAAAACAACTTAGTTCCAGATGTTCCTGCAACTGTTGCAGCCGTTAAGAACCCTACTTCAAAGATAGTGTATGATGAATACAATCATGAGCGATTTCCTCCGGGTGATCCCAGCAAGCGTGCATTTGCCTATTTTGTCTTGTCAGGCGGTCGGTTTGTCTATGCTTCTTTGATTCGCCTCCTTGTTCTCAAGTTTGTTCTTAGCATGTCAGCCAGTAAGGATGTTCTTGCCCTGGCCTCACTTGAGGTTGACCTCTCAAGCATTGAGCCTGGTTCTACTGTGACGGTTAAGTGGCGTGGAAAACCAGTCTTCATCAGGCGACGAACTGAAGATGATATTAAGATAGCAAATAGCGTCGACATTGGATCTCTTCGTGACCCACAGCAGGATGTCGAAAGAGTCAAGGATCCAGAATGGCTTATCGTGATTGGTGTTTGCACACATCTTGGTTGCATTCCCTTGCCAAATGCTGGTGATTTTGGTGGGTGGTTTTGCCCGTGCCATGGTTCCCATTACGACATCTCCGGTAGGATCCGTAAAGGACCAGCGCCATACAATTTGGAGGTACCCACCTATACCTTTTTGGATGAAAACAAGCTTTTGATTGGTTAAGAAATCAAACTCTTTTTCTGGGTTTGTAGTAGTGGTTTGGAACAATCATCTATGATAATGTCTTGAAGATTTGTTGCAGGCATTTTATTATTTTTCTACTCAAATTCTGATTTGATGTTTATGTTATGAGAAAACTGTAACTCCCGTATATTGGTGGTGCATGAATGCATCTGAATAAGTTGCTTTGCTTGAATGGGGTGTTTCCCCCATGAAGTAAGATCTTCTGATTTTGGGAATAGACTTGATAGTGAAATGGAAACTAAAATTTCTTTGTATGATTTGTATCTACAATTGCTATACAAGTCTACAAAATTTTCTTCAGTTGAGCAGATTT

Coding sequence (CDS)

ATGCTGAGGGTTGCGGCTCGAAGGCTCTCTTCGCTCCCTTCTTCCCATTTCAGGCCCTCTATTGCCTCTTCCTTGCCCGGTTCTCATAAGATCGCTGATGGCGGTGATTCTGCCCCATCCAATGATTTCAGATCCGTCAGCTCTTTCAATACCTTCGCTTTTGGATCCAACTTTGCGCCTAGTTGTCGAGGTTTCGCTTCTGATGCCTTGACTTCAATGGGCGAAAACAACTTAGTTCCAGATGTTCCTGCAACTGTTGCAGCCGTTAAGAACCCTACTTCAAAGATAGTGTATGATGAATACAATCATGAGCGATTTCCTCCGGGTGATCCCAGCAAGCGTGCATTTGCCTATTTTGTCTTGTCAGGCGGTCGGTTTGTCTATGCTTCTTTGATTCGCCTCCTTGTTCTCAAGTTTGTTCTTAGCATGTCAGCCAGTAAGGATGTTCTTGCCCTGGCCTCACTTGAGGTTGACCTCTCAAGCATTGAGCCTGGTTCTACTGTGACGGTTAAGTGGCGTGGAAAACCAGTCTTCATCAGGCGACGAACTGAAGATGATATTAAGATAGCAAATAGCGTCGACATTGGATCTCTTCGTGACCCACAGCAGGATGTCGAAAGAGTCAAGGATCCAGAATGGCTTATCGTGATTGGTGTTTGCACACATCTTGGTTGCATTCCCTTGCCAAATGCTGGTGATTTTGGTGGGTGGTTTTGCCCGTGCCATGGTTCCCATTACGACATCTCCGGTAGGATCCGTAAAGGACCAGCGCCATACAATTTGGAGGTACCCACCTATACCTTTTTGGATGAAAACAAGCTTTTGATTGGTTAA

Protein sequence

MLRVAARRLSSLPSSHFRPSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNFAPSCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG

Homology

[Close]

BLAST of Cp4.1LG01g19250 vs. Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 7.2e-115
Identity = 208/280 (74.29%), Postives = 236/280 (84.29%), Query Frame = 1


Query: 1   MLRVAARRLSSL---PSSHFRPSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSN 60
           MLR+A RR SSL   P     PS ++ +  +H  +D   S+P    RS+S     +  S 
Sbjct: 1   MLRIAGRRASSLSRWPVRSVAPSSSAFISANHFSSDDDSSSP----RSISP----SLASV 60

Query: 61  FAPSCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFA 120
           F    RGF+S++++   +  LVPD+P TVAA+KNPTSKIVYDE+NHER+PPGDPSKRAFA
Sbjct: 61  FLHHTRGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFA 120

Query: 121 YFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPV 180
           YFVL+GGRFVYASL+RLL+LKFVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPV
Sbjct: 121 YFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPV 180

Query: 181 FIRRRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGW 240
           FIRRRTEDDI +ANSVD+GSLRDPQQD ERVK PEWL+VIGVCTHLGCIPLPNAGDFGGW
Sbjct: 181 FIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGW 240

Query: 241 FCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           FCPCHGSHYDISGRIRKGPAPYNLEVPTY+FL+ENKLLIG
Sbjct: 241 FCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272

[Close]

BLAST of Cp4.1LG01g19250 vs. Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 9.7e-112
Identity = 198/259 (76.45%), Postives = 226/259 (87.26%), Query Frame = 1


Query: 19  PSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNFAPSCRGFASDALTSMGENNL 78
           PS ++ +  +H  +D   S+P    RS+S     +  S F    RGF+S++++   +  L
Sbjct: 8   PSSSAFISANHFSSDDDSSSP----RSISP----SLASVFLHHTRGFSSNSVSPAHDMGL 67

Query: 79  VPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFVLSGGRFVYASLIRLLVLK 138
           VPD+P TVAA+KNPTSKIVYDE+NHER+PPGDPSKRAFAYFVL+GGRFVYASL+RLL+LK
Sbjct: 68  VPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRLLILK 127

Query: 139 FVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKIANSVDIGSL 198
           FVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTEDDI +ANSVD+GSL
Sbjct: 128 FVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDISLANSVDLGSL 187

Query: 199 RDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP 258
           RDPQQD ERVK+PEWL+VIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP
Sbjct: 188 RDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP 247

Query: 259 YNLEVPTYTFLDENKLLIG 278
           YNLEVPTY+FL+ENKLLIG
Sbjct: 248 YNLEVPTYSFLEENKLLIG 258

[Close]

BLAST of Cp4.1LG01g19250 vs. Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 2.2e-111
Identity = 207/277 (74.73%), Postives = 234/277 (84.48%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNFAP 60
           MLRVA RRLSS   S  R S       S  + D  DS+P+   RS S   T    S+F  
Sbjct: 1   MLRVAGRRLSS---SAARSSSTFFTRSSFTVTD--DSSPA---RSPSPSLT----SSFLD 60

Query: 61  SCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120
             RGF+S++++   +  LV D+PATVAA+KNP+SKIVYD+ NHER+PPGDPSKRAFAYFV
Sbjct: 61  QIRGFSSNSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFV 120

Query: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180
           L+GGRFVYAS +RLL+LKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LTGGRFVYASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 181 RRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCP 240
           RRT+DDIK+ANSVD+G+LRDPQQD ERVK+PEWL+V+GVCTHLGCIPLPNAGDFGGWFCP
Sbjct: 181 RRTDDDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCP 240

Query: 241 CHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CHGSHYDISGRIRKGPAPYNLEVPTY+FL+ENKLLIG
Sbjct: 241 CHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 265

[Close]

BLAST of Cp4.1LG01g19250 vs. Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 5.3e-110
Identity = 188/222 (84.68%), Postives = 207/222 (93.24%), Query Frame = 1


Query: 56  SNFAPSCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRA 115
           SN      GF+S++++   +  LVPD+P TVAA+KNPTSKIVYDE+NHER+PPGDPSKRA
Sbjct: 15  SNSFSIISGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRA 74

Query: 116 FAYFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGK 175
           FAYFVL+GGRFVYASL+RLL+LKFVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGK
Sbjct: 75  FAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGK 134

Query: 176 PVFIRRRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFG 235
           PVFIRRRTEDDI +ANSVD+GSLRDPQQD ERVK PEWL+VIGVCTHLGCIPLPNAGDFG
Sbjct: 135 PVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFG 194

Query: 236 GWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           GWFCPCHGSHYDISGRIRKGPAPYNLEVPTY+FL+ENKLLIG
Sbjct: 195 GWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 236

[Close]

BLAST of Cp4.1LG01g19250 vs. Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 7.0e-110
Identity = 200/277 (72.20%), Postives = 228/277 (82.31%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNFAP 60
           MLR+A R+LSS  S+  R S A          D   S          S +  +  S F  
Sbjct: 1   MLRIAGRKLSS--SAATRSSSAFFTRNPFTFTDDSSSP-------ARSPSPASLASQFLD 60

Query: 61  SCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120
             RGF+S++++   +  LV D+PATVAA+KNP+SKIVYD+ NHER+PPGDPSKRAFAYFV
Sbjct: 61  QFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFV 120

Query: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180
           L+GGRFVYASL+RLL+LKFVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPVFIR
Sbjct: 121 LTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIR 180

Query: 181 RRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCP 240
           RRTE+DI +ANSVD+GSLRDPQQD ERVK+PEWL+VIGVCTHLGCIPLPNAGDFGGWFCP
Sbjct: 181 RRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCP 240

Query: 241 CHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CHGSHYDISGRIRKGPAPYNLEVPTY+F++ENKLLIG
Sbjct: 241 CHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 268

[Close]

BLAST of Cp4.1LG01g19250 vs. TrEMBL
Match: A0A0A0KNC0_CUCSA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucumis sativus GN=Csa_5G464790 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 1.1e-133
Identity = 241/277 (87.00%), Postives = 255/277 (92.06%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNFAP 60
           MLRVAARRLSSL SSHFRP+IASSLP SH I D  DS   NDFRS   F+TF    +F  
Sbjct: 1   MLRVAARRLSSLSSSHFRPTIASSLPLSHNIIDSTDS---NDFRSAGFFHTFPIRPHFDR 60

Query: 61  SCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120
           + RGFASDALTS  ENNLVPDVPAT+AAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV
Sbjct: 61  NSRGFASDALTSTKENNLVPDVPATIAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120

Query: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGATVTVKWRGKPVFIR 180

Query: 181 RRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCP 240
           RRTE+DIK+ANSVDIG+LRDPQQD ERVKDPEWL+V+GVCTHLGCIPLPNAGDFGGWFCP
Sbjct: 181 RRTEEDIKLANSVDIGTLRDPQQDGERVKDPEWLVVVGVCTHLGCIPLPNAGDFGGWFCP 240

Query: 241 CHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CHGSHYD+SGRIRKGPAPYNLEVPTYTFL++NKLLIG
Sbjct: 241 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLEDNKLLIG 274

[Close]

BLAST of Cp4.1LG01g19250 vs. TrEMBL
Match: A0A0A0KTT3_CUCSA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucumis sativus GN=Csa_5G464800 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 4.2e-130
Identity = 234/277 (84.48%), Postives = 249/277 (89.89%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNFAP 60
           MLR+AARRLSSL SSHFRP+IASS P SH I D  DS   NDFRS   FNTF   S F  
Sbjct: 1   MLRIAARRLSSLSSSHFRPTIASSFPASHNIIDSTDS---NDFRSAGFFNTFPIRSQFDR 60

Query: 61  SCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120
             RGFASDAL S  ++ L+ D+PATVAAVKNP+SKIVYD+YNHERFPPGDPSKRAFAYFV
Sbjct: 61  HSRGFASDALASTKDDGLILDIPATVAAVKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 120

Query: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 181 RRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCP 240
           RRTEDDIK+ANSVDIGSLRDPQQD ERVKDPEWL+V+GVCTHLGCIPLPNAGD+GGWFCP
Sbjct: 181 RRTEDDIKLANSVDIGSLRDPQQDEERVKDPEWLVVVGVCTHLGCIPLPNAGDYGGWFCP 240

Query: 241 CHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CHGSHYD+SGRIRKGPAPYNLEVPTY+FL+ NKLLIG
Sbjct: 241 CHGSHYDVSGRIRKGPAPYNLEVPTYSFLEGNKLLIG 274

[Close]

BLAST of Cp4.1LG01g19250 vs. TrEMBL
Match: M5WT51_PRUPE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Prunus persica GN=PRUPE_ppa009909mg PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 2.3e-120
Identity = 224/280 (80.00%), Postives = 245/280 (87.50%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPS---IASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSN 60
           MLRVAARRL SL +S +RP+    ASS   S  + DG DS  S+D RS+       F ++
Sbjct: 1   MLRVAARRLCSLSASPWRPNQAATASSSVLSRNLIDGRDS--SDDLRSIY------FTTD 60

Query: 61  FAPSCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFA 120
           F    RGFASD+LT   +NNLVPDVP TVAAVKNPTSKIVYD+YNHER+PPGDPSKRAFA
Sbjct: 61  FYLPSRGFASDSLTPSKDNNLVPDVPPTVAAVKNPTSKIVYDDYNHERYPPGDPSKRAFA 120

Query: 121 YFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPV 180
           YFVL+GGRFVYASLIRLLVLKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPV
Sbjct: 121 YFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLAMASLEVDLSSIEPGATVTVKWRGKPV 180

Query: 181 FIRRRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGW 240
           FIRRRT+DDIK+ANSVD+ SLRDPQQD ERVK+PEWLIV+GVCTHLGCIPLPNAGDFGGW
Sbjct: 181 FIRRRTDDDIKLANSVDVNSLRDPQQDAERVKNPEWLIVVGVCTHLGCIPLPNAGDFGGW 240

Query: 241 FCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           FCPCHGSHYD+SGRIRKGPAPYNLEVPTYTFLDENKLLIG
Sbjct: 241 FCPCHGSHYDVSGRIRKGPAPYNLEVPTYTFLDENKLLIG 272

[Close]

BLAST of Cp4.1LG01g19250 vs. TrEMBL
Match: V4U2T2_9ROSI (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Citrus clementina GN=CICLE_v10016224mg PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 9.7e-119
Identity = 218/279 (78.14%), Postives = 242/279 (86.74%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSIASSLPGSHKIADGGDSAPSN--DFRSVSSFNTFAFGSNF 60
           MLRVAARRL S  SS     IASS      I +G DS+ S+  DFRS   + +   G  F
Sbjct: 1   MLRVAARRLLSPSSSSSLRPIASS----RNIINGADSSSSSNDDFRSNGFYGSGYLGPQF 60

Query: 61  APSCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAY 120
              CRGF+S++LT   E +LVP VPATVAAVKNPTSKIVYDEYNHER+PPGDPSKRAFAY
Sbjct: 61  QLPCRGFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAY 120

Query: 121 FVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVF 180
           FVL+GGRFVYASLIRLL+LKFVLSMSASKDVLA+ASLEVDLSSIEPGSTVTVKWRGKPVF
Sbjct: 121 FVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVF 180

Query: 181 IRRRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWF 240
           IRRRTE+DIK+AN+VD+GSLRDPQQD ERVK+PEWL+V+GVCTHLGCIPLPNAGDFGGWF
Sbjct: 181 IRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWF 240

Query: 241 CPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CPCHGSHYDISGRIRKGPAPYNLEVP+Y+FLDENK++IG
Sbjct: 241 CPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMIIG 275

[Close]

BLAST of Cp4.1LG01g19250 vs. TrEMBL
Match: A0A067L0B8_JATCU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Jatropha curcas GN=JCGZ_26880 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 3.7e-118
Identity = 217/279 (77.78%), Postives = 241/279 (86.38%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSH--FRPSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNF 60
           MLRVA RRLSS+ S+   +RP+ A+    S    + GDS+ S++ +S    + FAF  +F
Sbjct: 1   MLRVAVRRLSSICSTQPSWRPNQAALSIVSSNPINSGDSSSSDEIKSKVLKDYFAFRPHF 60

Query: 61  APSCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAY 120
            P  RGF+S +LT   E+ ++ DVPATVAAVKNPTSKI YDEYNHERFPPGDPSKRAFAY
Sbjct: 61  HPPQRGFSSGSLTPRNEDGIISDVPATVAAVKNPTSKITYDEYNHERFPPGDPSKRAFAY 120

Query: 121 FVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVF 180
           FVL+GGRFVYAS+IRLL+LKFVLSMSASKDVLALASLEVDLS IEPGSTVTVKWRGKPVF
Sbjct: 121 FVLTGGRFVYASVIRLLILKFVLSMSASKDVLALASLEVDLSGIEPGSTVTVKWRGKPVF 180

Query: 181 IRRRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWF 240
           IRRRTEDDIK+ANSVD+ SLRDPQ D +RVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWF
Sbjct: 181 IRRRTEDDIKLANSVDLASLRDPQPDADRVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWF 240

Query: 241 CPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKL+IG
Sbjct: 241 CPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLMIG 279

[Close]

BLAST of Cp4.1LG01g19250 vs. TAIR10
Match: AT5G13440.1 (AT5G13440.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit)

HSP 1 Score: 402.9 bits (1034), Expect = 1.6e-112
Identity = 205/279 (73.48%), Postives = 233/279 (83.51%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSIASS--LPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNF 60
           MLRVA RRL S+     R S A+S  L   H ++DGG+S+ ++  RSV S +  +F S  
Sbjct: 1   MLRVAGRRLFSVSQ---RSSTATSFVLSRDHTLSDGGNSSSAS--RSVPSADLSSFNSYH 60

Query: 61  APSCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAY 120
               RGFAS  +T   E     +VPATV AVK P SKIVYD++NHER+PPGDPSKRAFAY
Sbjct: 61  RSVIRGFASQVITQGNEIGFGSEVPATVEAVKTPNSKIVYDDHNHERYPPGDPSKRAFAY 120

Query: 121 FVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVF 180
           FVLSGGRFVYAS++RLLVLK ++SMSASKDVLALASLEVDL SIEPG+TVTVKWRGKPVF
Sbjct: 121 FVLSGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVF 180

Query: 181 IRRRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWF 240
           IRRRTEDDIK+ANSVD+GSLRDPQ+D  RVK+PEWLIV+GVCTHLGCIPLPNAGD+GGWF
Sbjct: 181 IRRRTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLIVVGVCTHLGCIPLPNAGDYGGWF 240

Query: 241 CPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CPCHGSHYDISGRIRKGPAPYNLEVPTY+FL+ENKLLIG
Sbjct: 241 CPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 274

[Close]

BLAST of Cp4.1LG01g19250 vs. TAIR10
Match: AT5G13430.1 (AT5G13430.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit)

HSP 1 Score: 389.8 bits (1000), Expect = 1.4e-108
Identity = 200/279 (71.68%), Postives = 229/279 (82.08%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSIASSLPGS--HKIADGGDSAPSNDFRSVSSFNTFAFGSNF 60
           MLRVA RRL S+     R S A+S   S  H ++DGG  + S   RS+ S +  ++  + 
Sbjct: 1   MLRVAGRRLFSVSQ---RSSTATSFVVSRDHTLSDGGGDSSSAP-RSLPSADLSSYHRSL 60

Query: 61  APSCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAY 120
               RGF+S  L    E     +VPATV AVK P SKIVYD++NHER+PPGDPSKRAFAY
Sbjct: 61  I---RGFSSQVLAQGNEIGFGSEVPATVEAVKTPNSKIVYDDHNHERYPPGDPSKRAFAY 120

Query: 121 FVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVF 180
           FVLSGGRFVYAS++RLLVLK ++SMSASKDVLALASLEVDL SIEPG+TVTVKWRGKPVF
Sbjct: 121 FVLSGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVF 180

Query: 181 IRRRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWF 240
           IRRRTEDDIK+ANSVD+GSLRDPQ+D  RVK+PEWL+V+GVCTHLGCIPLPNAGD+GGWF
Sbjct: 181 IRRRTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDYGGWF 240

Query: 241 CPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CPCHGSHYDISGRIRKGPAPYNLEVPTY+FL+ENKLLIG
Sbjct: 241 CPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272

[Close]

BLAST of Cp4.1LG01g19250 vs. TAIR10
Match: AT4G03280.1 (AT4G03280.1 photosynthetic electron transfer C)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-08
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 1


Query: 219 VCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLL 276
           VCTHLGC+   N  +   + CPCHGS Y+  GR+ +GPAP +L +      +  K+L
Sbjct: 156 VCTHLGCVVPWNKAE-NKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVL 211

[Close]

BLAST of Cp4.1LG01g19250 vs. NCBI nr
Match: gi|659072410|ref|XP_008465508.1| (PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Cucumis melo])

HSP 1 Score: 491.9 bits (1265), Expect = 7.4e-136
Identity = 245/277 (88.45%), Postives = 257/277 (92.78%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNFAP 60
           MLR+AARRLSSL SSHFRP+IASSLPGSH I D  DS   NDFRS   FNTF  G +F  
Sbjct: 1   MLRIAARRLSSLSSSHFRPTIASSLPGSHNIIDSTDS---NDFRSGGFFNTFPIGPHFDR 60

Query: 61  SCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120
           + RGFASDAL+SM E NLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV
Sbjct: 61  NSRGFASDALSSMKETNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120

Query: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 181 RRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCP 240
           RRTE+DIK+ANSVDIG+LRDPQQD ERVKDPEWLIV+GVCTHLGCIPLPNAGDFGGWFCP
Sbjct: 181 RRTEEDIKLANSVDIGTLRDPQQDGERVKDPEWLIVVGVCTHLGCIPLPNAGDFGGWFCP 240

Query: 241 CHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CHGSHYD+SGRIRKGPAPYNLEVPTYTFL++NKLLIG
Sbjct: 241 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLEDNKLLIG 274

[Close]

BLAST of Cp4.1LG01g19250 vs. NCBI nr
Match: gi|449452028|ref|XP_004143762.1| (PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 484.2 bits (1245), Expect = 1.5e-133
Identity = 241/277 (87.00%), Postives = 255/277 (92.06%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNFAP 60
           MLRVAARRLSSL SSHFRP+IASSLP SH I D  DS   NDFRS   F+TF    +F  
Sbjct: 1   MLRVAARRLSSLSSSHFRPTIASSLPLSHNIIDSTDS---NDFRSAGFFHTFPIRPHFDR 60

Query: 61  SCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120
           + RGFASDALTS  ENNLVPDVPAT+AAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV
Sbjct: 61  NSRGFASDALTSTKENNLVPDVPATIAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120

Query: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGATVTVKWRGKPVFIR 180

Query: 181 RRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCP 240
           RRTE+DIK+ANSVDIG+LRDPQQD ERVKDPEWL+V+GVCTHLGCIPLPNAGDFGGWFCP
Sbjct: 181 RRTEEDIKLANSVDIGTLRDPQQDGERVKDPEWLVVVGVCTHLGCIPLPNAGDFGGWFCP 240

Query: 241 CHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CHGSHYD+SGRIRKGPAPYNLEVPTYTFL++NKLLIG
Sbjct: 241 CHGSHYDVSGRIRKGPAPYNLEVPTYTFLEDNKLLIG 274

[Close]

BLAST of Cp4.1LG01g19250 vs. NCBI nr
Match: gi|659072408|ref|XP_008465498.1| (PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Cucumis melo])

HSP 1 Score: 476.9 bits (1226), Expect = 2.5e-131
Identity = 236/277 (85.20%), Postives = 253/277 (91.34%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNFAP 60
           MLR+AARRLSSL SSHFRP+IASSLPGSH I D   SA SNDFRS   FNTF    +F  
Sbjct: 1   MLRIAARRLSSLSSSHFRPTIASSLPGSHNIID---SADSNDFRSAGFFNTFPIRPHFDR 60

Query: 61  SCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120
           + RGFASDAL S  ++ L+ D+PATVAAVKNP+SKIVYD+YNHERFPPGDPSKRAFAYFV
Sbjct: 61  NSRGFASDALASTKDDGLIMDIPATVAAVKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 120

Query: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 181 RRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCP 240
           RRTEDDIK+ANSVDIGSLRDPQQD ERVKDPEWL+V+GVCTHLGCIPLPNAGD+GGWFCP
Sbjct: 181 RRTEDDIKLANSVDIGSLRDPQQDEERVKDPEWLVVVGVCTHLGCIPLPNAGDYGGWFCP 240

Query: 241 CHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CHGSHYD+SGRIRKGPAPYNLEVPTY+FL+ NKLLIG
Sbjct: 241 CHGSHYDVSGRIRKGPAPYNLEVPTYSFLEGNKLLIG 274

[Close]

BLAST of Cp4.1LG01g19250 vs. NCBI nr
Match: gi|449452030|ref|XP_004143763.1| (PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 472.2 bits (1214), Expect = 6.1e-130
Identity = 234/277 (84.48%), Postives = 249/277 (89.89%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSIASSLPGSHKIADGGDSAPSNDFRSVSSFNTFAFGSNFAP 60
           MLR+AARRLSSL SSHFRP+IASS P SH I D  DS   NDFRS   FNTF   S F  
Sbjct: 1   MLRIAARRLSSLSSSHFRPTIASSFPASHNIIDSTDS---NDFRSAGFFNTFPIRSQFDR 60

Query: 61  SCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFV 120
             RGFASDAL S  ++ L+ D+PATVAAVKNP+SKIVYD+YNHERFPPGDPSKRAFAYFV
Sbjct: 61  HSRGFASDALASTKDDGLILDIPATVAAVKNPSSKIVYDDYNHERFPPGDPSKRAFAYFV 120

Query: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180
           LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR
Sbjct: 121 LSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIR 180

Query: 181 RRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCP 240
           RRTEDDIK+ANSVDIGSLRDPQQD ERVKDPEWL+V+GVCTHLGCIPLPNAGD+GGWFCP
Sbjct: 181 RRTEDDIKLANSVDIGSLRDPQQDEERVKDPEWLVVVGVCTHLGCIPLPNAGDYGGWFCP 240

Query: 241 CHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           CHGSHYD+SGRIRKGPAPYNLEVPTY+FL+ NKLLIG
Sbjct: 241 CHGSHYDVSGRIRKGPAPYNLEVPTYSFLEGNKLLIG 274

[Close]

BLAST of Cp4.1LG01g19250 vs. NCBI nr
Match: gi|1009152009|ref|XP_015893861.1| (PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 439.9 bits (1130), Expect = 3.3e-120
Identity = 222/283 (78.45%), Postives = 245/283 (86.57%), Query Frame = 1


Query: 1   MLRVAARRLSSLPSSHFRPSI----ASSLPGSHKIADGGD--SAPSNDFRSVSSFNTFAF 60
           MLRVAARRLSSL    +RP++    ASSL   + I D  D  S+P +D RS      F+F
Sbjct: 1   MLRVAARRLSSLSPFQWRPNVQAATASSLFSRNPINDAADHSSSPFDDLRS------FSF 60

Query: 61  GSNFAPSCRGFASDALTSMGENNLVPDVPATVAAVKNPTSKIVYDEYNHERFPPGDPSKR 120
              F    RGF+SD+LT   +N++VPD+PATVAAVKNPTSKIVYDEYNHER+PPGDPSKR
Sbjct: 61  TLRFPIPSRGFSSDSLTPSKDNSVVPDIPATVAAVKNPTSKIVYDEYNHERYPPGDPSKR 120

Query: 121 AFAYFVLSGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRG 180
           AFAYFVL+GGRFVYAS+IRLL+LKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRG
Sbjct: 121 AFAYFVLTGGRFVYASVIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRG 180

Query: 181 KPVFIRRRTEDDIKIANSVDIGSLRDPQQDVERVKDPEWLIVIGVCTHLGCIPLPNAGDF 240
           KPVFIRRRTEDDIK+ANS+D+ SLRDPQ D ERVKDPEWL+V+GVCTHLGCIPLPNAGDF
Sbjct: 181 KPVFIRRRTEDDIKLANSIDVASLRDPQPDAERVKDPEWLVVVGVCTHLGCIPLPNAGDF 240

Query: 241 GGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 278
           GGWFCPCHGSHYDISGRIRKGPAPYNLEVPTY+FLDENKLLIG
Sbjct: 241 GGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLDENKLLIG 277

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g19250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UCRI2_TOBAC	7.2e-115	74.29	Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=...	[more]
UCRI1_TOBAC	9.7e-112	76.45	Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana ...	[more]
UCRI_SOLTU	2.2e-111	74.73	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FE...	[more]
UCRI4_TOBAC	5.3e-110	84.68	Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=...	[more]
UCRI3_TOBAC	7.0e-110	72.20	Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=...	[more]

BLAST of Cp4.1LG01g19250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNC0_CUCSA	1.1e-133	87.00	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucumis sativus GN=Csa_...	[more]
A0A0A0KTT3_CUCSA	4.2e-130	84.48	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cucumis sativus GN=Csa_...	[more]
M5WT51_PRUPE	2.3e-120	80.00	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Prunus persica GN=PRUPE...	[more]
V4U2T2_9ROSI	9.7e-119	78.14	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Citrus clementina GN=CI...	[more]
A0A067L0B8_JATCU	3.7e-118	77.78	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Jatropha curcas GN=JCGZ...	[more]

BLAST of Cp4.1LG01g19250 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13440.1	1.6e-112	73.48	Ubiquinol-cytochrome C reductase iron-sulfur subunit	[more]
AT5G13430.1	1.4e-108	71.68	Ubiquinol-cytochrome C reductase iron-sulfur subunit	[more]
AT4G03280.1	3.7e-08	42.11	photosynthetic electron transfer C	[more]

BLAST of Cp4.1LG01g19250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072410\|ref\|XP_008465508.1\|	7.4e-136	88.45	PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Cucumis...	[more]
gi\|449452028\|ref\|XP_004143762.1\|	1.5e-133	87.00	PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Cucumis...	[more]
gi\|659072408\|ref\|XP_008465498.1\|	2.5e-131	85.20	PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Cucumis...	[more]
gi\|449452030\|ref\|XP_004143763.1\|	6.1e-130	84.48	PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Cucumis...	[more]
gi\|1009152009\|ref\|XP_015893861.1\|	3.3e-120	78.45	PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Ziziphu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors
GO:0008121	ubiquinol-cytochrome-c reductase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR017941	Rieske_2Fe-2S
IPR014349	Rieske_Fe-S_prot
IPR006317	Ubiquinol_cyt_c_Rdtase_Fe-S-su
IPR005805	Rieske_Fe-S_prot_C
IPR004192	Rieske_TM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0045275	respiratory chain complex III
cellular_component	GO:0016020	membrane
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g19250.1	Cp4.1LG01g19250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004192	Ubiquinol cytochrome reductase, transmembrane domain	GENE3D	G3DSA:1.20.5.270		coord: 101..137 score: 5.
IPR004192	Ubiquinol cytochrome reductase, transmembrane domain	PFAM	PF02921	UCR_TM	coord: 100..148 score: 3.3
IPR005805	Rieske iron-sulphur protein, C-terminal	PRINTS	PR00162	RIESKE	coord: 237..249 score: 3.0E-17coord: 249..261 score: 3.0E-17coord: 215..226 score: 3.0
IPR006317	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	TIGRFAMs	TIGR01416	TIGR01416	coord: 133..277 score: 3.0
IPR014349	Rieske iron-sulphur protein	PANTHER	PTHR10134	CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL	coord: 38..277 score: 3.0E-137coord: 2..20 score: 3.0E
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	GENE3D	G3DSA:2.102.10.10		coord: 138..276 score: 1.1
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	PFAM	PF00355	Rieske	coord: 161..263 score: 1.5
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	PROFILE	PS51296	RIESKE	coord: 187..275 score: 18
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	unknown	SSF50022	ISP domain	coord: 139..275 score: 1.44
None	No IPR available	PANTHER	PTHR10134:SF1	CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL	coord: 38..277 score: 3.0E-137coord: 2..20 score: 3.0E
None	No IPR available	unknown	SSF81502	ISP transmembrane anchor	coord: 88..150 score: 4.36

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g19250	Cucsa.033600	Cucumber (Gy14) v1	cgycpeB0013
Cp4.1LG01g19250	CmaCh15G008110	Cucurbita maxima (Rimu)	cmacpeB318
Cp4.1LG01g19250	CmaCh04G022210	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g19250	CmoCh04G023220	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g19250	CmoCh15G008360	Cucurbita moschata (Rifu)	cmocpeB280
Cp4.1LG01g19250	Cla005925	Watermelon (97103) v1	cpewmB440
Cp4.1LG01g19250	Csa5G464790	Cucumber (Chinese Long) v2	cpecuB421
Cp4.1LG01g19250	MELO3C005102	Melon (DHL92) v3.5.1	cpemeB359
Cp4.1LG01g19250	ClCG01G007840	Watermelon (Charleston Gray)	cpewcgB370
Cp4.1LG01g19250	CSPI05G15870	Wild cucumber (PI 183967)	cpecpiB420
Cp4.1LG01g19250	Lsi09G008270	Bottle gourd (USVL1VR-Ls)	cpelsiB311
Cp4.1LG01g19250	MELO3C005102.2	Melon (DHL92) v3.6.1	cpemedB419
Cp4.1LG01g19250	CsaV3_5G024910	Cucumber (Chinese Long) v3	cpecucB0523
Cp4.1LG01g19250	Bhi12G000947	Wax gourd	cpewgoB0493
Cp4.1LG01g19250	CsGy5G015610	Cucumber (Gy14) v2	cgybcpeB629

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g19250	Cp4.1LG13g05930	Cucurbita pepo (Zucchini)	cpecpeB199

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g19250	Wax gourd	cpewgoB0490
Cp4.1LG01g19250	Wax gourd	cpewgoB0491
Cp4.1LG01g19250	Silver-seed gourd	carcpeB0670
Cp4.1LG01g19250	Silver-seed gourd	carcpeB1158