Cp4.1LG01g16440 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g16440
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	NIFU-like protein 2
Location	Cp4.1LG01 : 10043663 .. 10046435 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCCCATGGTGTTGAATTCCTCCCCTTACCACAGAGCCCCGCAAACCCTTCAATCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCGCGCCTTCGAGGTCCCTTTCCTTTCCCTCTTTTTCTCCTTCGTTTTCTGTTCCTCCTAACCAAATTGACAAGTTCAGATCTGGAATATCTTGTAGATCTCCTCCTTCTTCGTCCGCCATGTTTCGCCTTCAAGACAGCGCACTCCTCTTTGCCAGAGATCATGTCGTTCCCTTCGAATTAACTCACGCACGCCAGGTACTATTTCTGCGTTCCTTCTATTGAATTGTGTTGGATTCGCATTAAGTTCTGGTTGTTGATTCTATCGGATGTTTTTGTCTGATAAATTGCTCGCTCTTAGGGTAGATATGCGATTGGTTATTGTAGATGTTAGAACGAAGCCCCTCCCCAATCCTCTTTCTCCTGAGACTGCCAATCTTTGTCGTATGATTCAAAATTTTCTGTTTACAGTTATTAGAGCCGTCGCAACTTCCAATTCGGCACTGGAATTGCCGCTGACTGCAGAAAATGTTGAAAGTGTGCTGGATGAGGTTCGACCATATCTTATTGCGGATGGTGGTAATGTGGCATTACATGAAATAGACGGAAATGTTGTACGGTTGAAGCTACAAGGAGCATGTGGCTCATGTCCGAGTTCTGTTACGACTATGAAGATGGGAATTGAACGGCGTTTGATGGAGAAGATCCCTGAAATAGTTGCTGTGGAACCAATAGCAGATGAGGAAACTGGATTGGAGCTCAACGAGGACAATATAGAGAAGGTAAATCAATGTTCACTCTCTATCACGCGTATTCATTCTATGATTTAGATGCAACTTAAATTGGTTTCTGAATCGTATTTTTGCCTTACACCAACCCACTTGTAATCTCTAACCTAGAGACGACTTATAATGGACCCTTCAAGGTATTTGAACATTTTTTGGGAGGAAGAAGCACAATGGTATAGCTCACACAGGTTCTTTGATATATATGATTATTGAGAAATTAAGGGTAGGATTAAGCTAGCATTCTTTGATGTATGTGATTATTGAGAAATTAAGGGTAGGATTAAGCTAGCATTCTTTGATGTATGTGATTATTGAGAAATTAAGGGTAGGATTAAGCTAGCATTCTTTGATGTATGTGATTATTGAGAAATTAAGGGTAGGATTAAGCTAGCATTCTTTGATGTATGTGATTATTGAGAAATTAAGGGTAGGATTAAGCTAGCATTCTTTGATGTATGTGATTATTGAGAAATTAAGGGTAGGATTAAGCTAGCATTCTTTGATGTATGTGATTATTGAGAAATTAAGGGTAGGATTAAGCTAGCATTCTTTGATGTATGTGATTATTGAGAAATTAAGGGTAGGATTAAGCTAGCATTCTTTGATGTATGTGATTATTGAGAAATTATGGGTAGGACTAGGCTAGCATTCTTTGATATATGTGATTATTGAGATATTAAGGGTAGGATTAAGCTAGCATTCTTTTTATTCAACTTCGACAATAACTTCAGATTGGCTTCATTTTTTGACAAGAACCCTTTTAGTAGATCGTGCCTCTCTCTCCGTAGTTTTTGGCATTTCAGTCTTCCATTTCCCATTTATCTGTGACTGAAGAAACGAATGGGATTTCGAAATCATCCTTATTCGGATAAGGACTGCCAAGAAAGCGTGTGGCATGATTACATCTTCATTTCGTTCTTCATAGAAATATCAATTAAGTGCATCCAAGGTCCGTGAGTCTGATTTTTTTCATCCGACTTGGTAATGTTCCAAAGCTGCGACCAGCTTGATTAAGCTTGCAGCATTTGTAGACAATGAACCTGATAGTAATGCAACATTAAGACGTTTAAAATTGCCTGTCATGATATGAAAACCAAGGGGCTGTATAATCGAATCGTACTAGTAGGTTGTTTTCGAAATACTTATTATTCCCCATATAAGTACTGCTCTATTTTCTTTTTTCATTCTGACTTATCATGTGGTAGGTTTTCTAACCCGTCTCATCCTTGCATCCAAGTTGGTTGTAGTTCCATCGTTATTATTATCTATTCAATCTTGATGGAGATTCCAATGCCTCTTTCAACCTTATGAAATATTGGAAACAGAAACTCACTCTTGTTTGTACAATTATGATTCAATGTTATTATTGCTTATTTTTTCCAGTGAGTTCAGAAGACGAGTTTTCTTTGTGCCCCTTTCTTAGGTACTCGAAGAGATAAGACCTTATCTTGTCGGGGCAGCGGGAGGATCTCTCGAACTCGTGGGTATCGAGGAGCCAATAGTTAAAGTTCGGATCACAGGGCCAGCAGCTGGGGTCATGACAGTGCGTGTGGCTGTTACACAAAAATTGCGAGAGAAGATACCATCCATAGCCGCAGTTCAACTTTTGTCATAATGAATCTACAGAATACGAGGAGATGTGGATAGTTCTTCATTATTCAATTCGTCACATAAGAATAGAAACTCGTAGAATTTGTGTATCATGGTTGCCTCGAGGTATCCTCCTGATTGTGTTATTGGCGCTGCATTTATGTAAAATGTAGCCTCATGAACAAATTTTTAGATTATTCCGTACAATTTGCTTTCATAAGGGCACAAATAATCTGAAAAAATTGTAAATCTCATTTCTTTACAATATGGATTACAACGAGTGGACTAGCTTGTGTTTATATGTATATAATCCTTAAATTGTGAATAGTTTAGACCCAAGAATAGACCTAATTTGGTG

mRNA sequence

ATGCATCCCATGGTGTTGAATTCCTCCCCTTACCACAGAGCCCCGCAAACCCTTCAATCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCGCGCCTTCGAGATCTCCTCCTTCTTCGTCCGCCATGTTTCGCCTTCAAGACAGCGCACTCCTCTTTGCCAGAGATCATGTCGTTCCCTTCGAATTAACTCACGCACGCCAGTTATTAGAGCCGTCGCAACTTCCAATTCGGCACTGGAATTGCCGCTGACTGCAGAAAATGTTGAAAGTGTGCTGGATGAGGTTCGACCATATCTTATTGCGGATGGTGGTAATGTGGCATTACATGAAATAGACGGAAATGTTGTACGGTTGAAGCTACAAGGAGCATGTGGCTCATGTCCGAGTTCTGTTACGACTATGAAGATGGGAATTGAACGGCGTTTGATGGAGAAGATCCCTGAAATAGTTGCTGTGGAACCAATAGCAGATGAGGAAACTGGATTGGAGCTCAACGAGGACAATATAGAGAAGGTACTCGAAGAGATAAGACCTTATCTTGTCGGGGCAGCGGGAGGATCTCTCGAACTCGTGGGTATCGAGGAGCCAATAGTTAAAGTTCGGATCACAGGGCCAGCAGCTGGGGTCATGACAGTGCGTGTGGCTGTTACACAAAAATTGCGAGAGAAGATACCATCCATAGCCGCAGTTCAACTTTTGTCATAATGAATCTACAGAATACGAGGAGATGTGGATAGTTCTTCATTATTCAATTCGTCACATAAGAATAGAAACTCGTAGAATTTGTGTATCATGGTTGCCTCGAGGTATCCTCCTGATTGTGTTATTGGCGCTGCATTTATGTAAAATGTAGCCTCATGAACAAATTTTTAGATTATTCCGTACAATTTGCTTTCATAAGGGCACAAATAATCTGAAAAAATTGTAAATCTCATTTCTTTACAATATGGATTACAACGAGTGGACTAGCTTGTGTTTATATGTATATAATCCTTAAATTGTGAATAGTTTAGACCCAAGAATAGACCTAATTTGGTG

Coding sequence (CDS)

ATGCATCCCATGGTGTTGAATTCCTCCCCTTACCACAGAGCCCCGCAAACCCTTCAATCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCGCGCCTTCGAGATCTCCTCCTTCTTCGTCCGCCATGTTTCGCCTTCAAGACAGCGCACTCCTCTTTGCCAGAGATCATGTCGTTCCCTTCGAATTAACTCACGCACGCCAGTTATTAGAGCCGTCGCAACTTCCAATTCGGCACTGGAATTGCCGCTGACTGCAGAAAATGTTGAAAGTGTGCTGGATGAGGTTCGACCATATCTTATTGCGGATGGTGGTAATGTGGCATTACATGAAATAGACGGAAATGTTGTACGGTTGAAGCTACAAGGAGCATGTGGCTCATGTCCGAGTTCTGTTACGACTATGAAGATGGGAATTGAACGGCGTTTGATGGAGAAGATCCCTGAAATAGTTGCTGTGGAACCAATAGCAGATGAGGAAACTGGATTGGAGCTCAACGAGGACAATATAGAGAAGGTACTCGAAGAGATAAGACCTTATCTTGTCGGGGCAGCGGGAGGATCTCTCGAACTCGTGGGTATCGAGGAGCCAATAGTTAAAGTTCGGATCACAGGGCCAGCAGCTGGGGTCATGACAGTGCGTGTGGCTGTTACACAAAAATTGCGAGAGAAGATACCATCCATAGCCGCAGTTCAACTTTTGTCATAA

Protein sequence

MHPMVLNSSPYHRAPQTLQSPPSSSSSSSSSSSRAFEISSFFVRHVSPSRQRTPLCQRSCRSLRINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS

Homology

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BLAST of Cp4.1LG01g16440 vs. Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.4e-71
Identity = 159/241 (65.98%), Postives = 184/241 (76.35%), Query Frame = 1


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSS-----SSSSSSSRAFEISSFFVRHVSPSRQRTPL 60
           M  + LN +   R P     P SSSS         SS RA  + +   R  +P R+    
Sbjct: 1   MQLLTLNPAAISRTPPQAIDPSSSSSLLLPFPQILSSQRALGLVA---RPCNPLRRGL-- 60

Query: 61  CQRSCRSLRINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEID 120
             R   S ++  R+ V++AVAT +  LE+PLT ENVESVLDE+RPYL++DGGNVALHEID
Sbjct: 61  -SRFLSSRQLFRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEID 120

Query: 121 GNVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKV 180
           GN+VR+KLQGACGSCPSS  TMKMGIERRLMEKIPEIVAVE + DEETGLELNE+NIEKV
Sbjct: 121 GNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKV 180

Query: 181 LEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQL 237
           LEEIRPYL+G A GSL+LV IE+PIVK+RITGPAAGVMTVRVAVTQKLREKIPSIAAVQL
Sbjct: 181 LEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQL 235

[Close]

BLAST of Cp4.1LG01g16440 vs. Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.9e-60
Identity = 134/228 (58.77%), Postives = 164/228 (71.93%), Query Frame = 1


Query: 27  SSSSSSSRAFEISSFFVRHVSPSRQRTPLCQRSCRSLRINSRTPVIRAVATSN------- 86
           S+++SSS +F+++++                 SCRS    S +P  R VA  N       
Sbjct: 17  STTTSSSASFKVAAY--------------AWSSCRS----SSSPATRLVAAPNHQRPPLV 76

Query: 87  ----------SALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGS 146
                     +A++LPLTA NVESVLD+VRPYL ADGG+VALHEI GNVVRLKLQGACGS
Sbjct: 77  VGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGS 136

Query: 147 CPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYLVGAAGG 206
           CPSS+ T+K GIERRLMEKIP++ AVEP+ D+ETGLELNE+N+EKVL EIRPYL G  GG
Sbjct: 137 CPSSLITIKRGIERRLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGG 196

Query: 207 SLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 238
            L+ + I+ PIVKVR+TGPAA V TVR+AV++KLREKIPSI  VQLLS
Sbjct: 197 GLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLLS 226

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BLAST of Cp4.1LG01g16440 vs. Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 7.9e-54
Identity = 127/214 (59.35%), Postives = 147/214 (68.69%), Query Frame = 1


Query: 24  SSSSSSSSSSRAFEISSFFVRHVSPSRQRTPLCQRSCRSLRINSRTPVIRAVATSNSALE 83
           SS  S+    +   I   +++H  P R+RT     SC                       
Sbjct: 44  SSKCSTFLRGQFQRIHFSWLQHTRPLRKRTVFGHVSC----------------------V 103

Query: 84  LPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIER 143
           +PLT ENVE VLDEVRP L+ADGGNVALHEIDG VV LKLQGACGSCPSS  T+KMGIE 
Sbjct: 104 MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIES 163

Query: 144 RLMEKIPEIVAVEPIADEET-GLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEEPIVK 203
           RL +KIPEI++VE   + ET GLELN++NIEKVL E+RPYL G  GG LELV I+  +VK
Sbjct: 164 RLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVK 223

Query: 204 VRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 237
           VR+TGPAAGVMTVRVA+TQKLRE IPSI AVQLL
Sbjct: 224 VRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLL 235

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BLAST of Cp4.1LG01g16440 vs. Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-20
Identity = 70/186 (37.63%), Postives = 108/186 (58.06%), Query Frame = 1


Query: 44  RHVSPSRQRTPLCQRSCRSLRINSR--TPVIRAVATS-NSALELPLTAENVESVLDEVRP 103
           RH+S    RT +  RS  S        +P+   V++   SA    LT +NV+ VL++VRP
Sbjct: 44  RHIS----RTAIFHRSAISGSSQGEKISPLASGVSSGLYSAQTFDLTPQNVDLVLEDVRP 103

Query: 104 YLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVA-VEPIA 163
           +LI+DGGNV +  ++  VV LKLQGAC SCPSS TTM MGIER L EK  + +  +  + 
Sbjct: 104 FLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVF 163

Query: 164 DEETGLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAV 223
           DEE   ++  + +   L+ +RP  +   GGS+E++ +E     V+  GP +  M ++ A+
Sbjct: 164 DEEV-KQITVEAVNAHLDILRP-AIKNYGGSVEVLSVEGEDCVVKYVGPESIGMGIQAAI 223

Query: 224 TQKLRE 226
            +K ++
Sbjct: 224 KEKFKD 223

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BLAST of Cp4.1LG01g16440 vs. Swiss-Prot
Match: YUTI_BACSU (Putative nitrogen fixation protein YutI OS=Bacillus subtilis (strain 168) GN=yutI PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.5e-16
Identity = 37/70 (52.86%), Postives = 54/70 (77.14%), Query Frame = 1


Query: 89  ENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIERRLMEK 148
           E V+ VLD++RP+L+ DGG+  L ++D  +V+L+L GACGSCPSS  T+K GIER L+E+
Sbjct: 41  EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERALLEE 100

Query: 149 IPEIVAVEPI 159
           +P +V VE +
Sbjct: 101 VPGVVEVEQV 110

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BLAST of Cp4.1LG01g16440 vs. TrEMBL
Match: A0A0A0KRX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G586560 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.8e-92
Identity = 199/237 (83.97%), Postives = 207/237 (87.34%), Query Frame = 1


Query: 6   LNSSPYHRAPQTLQSPPSSSSSSSSSSSRAFEISSFFV-RHVSPSRQRTPLCQRSCRSLR 65
           LN+SPY R+PQTL+SP         S SR F++S FFV RHVSP R       +SCRSLR
Sbjct: 8   LNTSPYTRSPQTLESP---------SCSRNFKVSRFFVLRHVSPWR-------KSCRSLR 67

Query: 66  I----NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 125
           I    +SRT  IRAVAT NSALELPLT ENVESVLDEVRPYLIADGGNVALHEIDGNVVR
Sbjct: 68  IRLPSSSRTRFIRAVATPNSALELPLTVENVESVLDEVRPYLIADGGNVALHEIDGNVVR 127

Query: 126 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR 185
           LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNE+NIEKVLEEIR
Sbjct: 128 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEENIEKVLEEIR 187

Query: 186 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 238
           PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS
Sbjct: 188 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 228

[Close]

BLAST of Cp4.1LG01g16440 vs. TrEMBL
Match: B9SSN2_RICCO (Nitrogen fixation protein nifU, putative OS=Ricinus communis GN=RCOM_1374380 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.1e-85
Identity = 186/236 (78.81%), Postives = 198/236 (83.90%), Query Frame = 1


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSSSSSSRAFEISSFFVRHVSPSRQRTPLCQRSC 60
           M  +V+N + Y R  QTL S PSSS        R F+ SS F   VS +R R  L +  C
Sbjct: 1   MQAVVINPT-YSRPHQTLDSAPSSS--------RPFKSSSLFSARVSLNRGRNHLRRIPC 60

Query: 61  RSLRINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120
           RS+R+  R  V+RAVAT NSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR
Sbjct: 61  RSVRLTRRL-VVRAVATPNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120

Query: 121 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR 180
           LKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIADEETGLELNE+NIEKVLEEIR
Sbjct: 121 LKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEENIEKVLEEIR 180

Query: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 237
           PYLVGAAGGSLELV IEEPI K+RITGPAAGVMTVRVAVTQKLREKIP+IAAVQLL
Sbjct: 181 PYLVGAAGGSLELVAIEEPIAKIRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 226

[Close]

BLAST of Cp4.1LG01g16440 vs. TrEMBL
Match: A0A067LEA0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00216 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 7.9e-85
Identity = 188/240 (78.33%), Postives = 197/240 (82.08%), Query Frame = 1


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSSSSSSRAFEISSFFVRHVSPSRQRTPLCQRSC 60
           M  +VLN   Y RA QT  SP         SSS  F+ SS F   VS  R+R  L +  C
Sbjct: 1   MQAVVLNPI-YCRAQQTPDSP---------SSSHPFKSSSLFATQVSLKRERNQLRRIPC 60

Query: 61  RSLRIN----SRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG 120
           RSLRI     +R  V+RAVAT  SALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG
Sbjct: 61  RSLRIRLPAFNRRLVLRAVATPESALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG 120

Query: 121 NVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVL 180
           NVVRLKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEP+ADEETGLELNE+NIEKVL
Sbjct: 121 NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPVADEETGLELNEENIEKVL 180

Query: 181 EEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 237
           EEIRPYLVGAAGGSLELV IEEPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLL
Sbjct: 181 EEIRPYLVGAAGGSLELVAIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 230

[Close]

BLAST of Cp4.1LG01g16440 vs. TrEMBL
Match: A0A067DYA7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026830mg PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 5.6e-83
Identity = 182/240 (75.83%), Postives = 198/240 (82.50%), Query Frame = 1


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSSSSSSRAFEISSFFVRHVSPSRQRTPLCQRSC 60
           M  +VLN S Y R  QTL SP  S  +S S+ S       FF   VS +R R P+C  SC
Sbjct: 1   MQGVVLNPS-YSRPHQTLDSPSCSRPASKSTKS-------FFGERVSLTRWRNPVCHSSC 60

Query: 61  RSLRIN----SRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG 120
           R L I     +R  VI+AVAT +SA+ELPLTAEN+ESVLDE+RPYLI+DGGNVALHEIDG
Sbjct: 61  RLLLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDG 120

Query: 121 NVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVL 180
           NVVRLKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVE +ADEETGLELNE+NIEKVL
Sbjct: 121 NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNEENIEKVL 180

Query: 181 EEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 237
           EEIRPYLVGAAGGSLELV I+EPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLL
Sbjct: 181 EEIRPYLVGAAGGSLELVTIDEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 232

[Close]

BLAST of Cp4.1LG01g16440 vs. TrEMBL
Match: V4T5X3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002359mg PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 7.4e-83
Identity = 183/240 (76.25%), Postives = 199/240 (82.92%), Query Frame = 1


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSSSSSSRAFEISSFFVRHVSPSRQRTPLCQRSC 60
           M  +VLN S Y R  QTL  PPS S  +S S+       SFF   VS +R R P+C  SC
Sbjct: 1   MQGVVLNPS-YSRPHQTLD-PPSCSRPASKSTK------SFFGERVSLTRWRNPVCHSSC 60

Query: 61  RSLRIN----SRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG 120
           R L I     +R  VI+AVAT +SA+ELPLTAEN+ESVLDE+RPYLI+DGGNVALHEIDG
Sbjct: 61  RLLLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDG 120

Query: 121 NVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVL 180
           NVVRLKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVE +ADEETGLELNE+NIEKVL
Sbjct: 121 NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNEENIEKVL 180

Query: 181 EEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 237
           EEIRPYLVGAAGGSLELV I+EPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLL
Sbjct: 181 EEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 232

[Close]

BLAST of Cp4.1LG01g16440 vs. TAIR10
Match: AT5G49940.1 (AT5G49940.1 NIFU-like protein 2)

HSP 1 Score: 270.8 bits (691), Expect = 8.1e-73
Identity = 159/241 (65.98%), Postives = 184/241 (76.35%), Query Frame = 1


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSS-----SSSSSSSRAFEISSFFVRHVSPSRQRTPL 60
           M  + LN +   R P     P SSSS         SS RA  + +   R  +P R+    
Sbjct: 1   MQLLTLNPAAISRTPPQAIDPSSSSSLLLPFPQILSSQRALGLVA---RPCNPLRRGL-- 60

Query: 61  CQRSCRSLRINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEID 120
             R   S ++  R+ V++AVAT +  LE+PLT ENVESVLDE+RPYL++DGGNVALHEID
Sbjct: 61  -SRFLSSRQLFRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEID 120

Query: 121 GNVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKV 180
           GN+VR+KLQGACGSCPSS  TMKMGIERRLMEKIPEIVAVE + DEETGLELNE+NIEKV
Sbjct: 121 GNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKV 180

Query: 181 LEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQL 237
           LEEIRPYL+G A GSL+LV IE+PIVK+RITGPAAGVMTVRVAVTQKLREKIPSIAAVQL
Sbjct: 181 LEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQL 235

[Close]

BLAST of Cp4.1LG01g16440 vs. TAIR10
Match: AT4G25910.1 (AT4G25910.1 NFU domain protein 3)

HSP 1 Score: 211.8 bits (538), Expect = 4.5e-55
Identity = 127/214 (59.35%), Postives = 147/214 (68.69%), Query Frame = 1


Query: 24  SSSSSSSSSSRAFEISSFFVRHVSPSRQRTPLCQRSCRSLRINSRTPVIRAVATSNSALE 83
           SS  S+    +   I   +++H  P R+RT     SC                       
Sbjct: 44  SSKCSTFLRGQFQRIHFSWLQHTRPLRKRTVFGHVSC----------------------V 103

Query: 84  LPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIER 143
           +PLT ENVE VLDEVRP L+ADGGNVALHEIDG VV LKLQGACGSCPSS  T+KMGIE 
Sbjct: 104 MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIES 163

Query: 144 RLMEKIPEIVAVEPIADEET-GLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEEPIVK 203
           RL +KIPEI++VE   + ET GLELN++NIEKVL E+RPYL G  GG LELV I+  +VK
Sbjct: 164 RLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVK 223

Query: 204 VRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 237
           VR+TGPAAGVMTVRVA+TQKLRE IPSI AVQLL
Sbjct: 224 VRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLL 235

[Close]

BLAST of Cp4.1LG01g16440 vs. TAIR10
Match: AT4G01940.1 (AT4G01940.1 NFU domain protein 1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-21
Identity = 70/186 (37.63%), Postives = 108/186 (58.06%), Query Frame = 1


Query: 44  RHVSPSRQRTPLCQRSCRSLRINSR--TPVIRAVATS-NSALELPLTAENVESVLDEVRP 103
           RH+S    RT +  RS  S        +P+   V++   SA    LT +NV+ VL++VRP
Sbjct: 44  RHIS----RTAIFHRSAISGSSQGEKISPLASGVSSGLYSAQTFDLTPQNVDLVLEDVRP 103

Query: 104 YLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVA-VEPIA 163
           +LI+DGGNV +  ++  VV LKLQGAC SCPSS TTM MGIER L EK  + +  +  + 
Sbjct: 104 FLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVF 163

Query: 164 DEETGLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAV 223
           DEE   ++  + +   L+ +RP  +   GGS+E++ +E     V+  GP +  M ++ A+
Sbjct: 164 DEEV-KQITVEAVNAHLDILRP-AIKNYGGSVEVLSVEGEDCVVKYVGPESIGMGIQAAI 223

Query: 224 TQKLRE 226
            +K ++
Sbjct: 224 KEKFKD 223

[Close]

BLAST of Cp4.1LG01g16440 vs. TAIR10
Match: AT1G51390.1 (AT1G51390.1 NFU domain protein 5)

HSP 1 Score: 55.1 bits (131), Expect = 7.0e-08
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1


Query: 87  TAENVESVLD-EVRPYLIADGGNVAL--HEIDGNVVRLKLQGACGSCPSSVTTMKMGIER 146
           T   ++ +L+  +RP +  DGG++     + +  +V+L++QGAC  CPSS  T+K GIE 
Sbjct: 187 TVAMIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIEN 246

Query: 147 RLMEKIPEIVAVEPIADEE 163
            LM  + E+  VE   D E
Sbjct: 247 MLMHYVSEVKGVEQEFDGE 265

[Close]

BLAST of Cp4.1LG01g16440 vs. TAIR10
Match: AT3G20970.1 (AT3G20970.1 NFU domain protein 4)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-07
Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 1


Query: 59  SCRSLRINSRTPVIRAVATSNSALELPLTAENVESVLD-EVRPYLIADGGNVALHEID-- 118
           S + L ++S+    +  A S    E   T   ++ +L+  +RP +  DGG++     D  
Sbjct: 167 SGQPLFLDSQAAAAKDTAISEDDSE---TVAMIKELLETRIRPAVQDDGGDIEYCGFDPE 226

Query: 119 GNVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEE 163
             +V+L++QGAC  CPSS  T+K GIE  LM  + E+  VE   D E
Sbjct: 227 SGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVEQEFDGE 270

[Close]

BLAST of Cp4.1LG01g16440 vs. NCBI nr
Match: gi|659090369|ref|XP_008445979.1| (PREDICTED: nifU-like protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 350.1 bits (897), Expect = 3.0e-93
Identity = 200/243 (82.30%), Postives = 211/243 (86.83%), Query Frame = 1


Query: 1   MHPMV--LNSSPYHRAPQTLQSPPSSSSSSSSSSSRAFEISSFFVRHVSPSRQRTPLCQR 60
           MH +V  LN+SPY RAPQTL+SP         S SR F++S FF RHVSP R       +
Sbjct: 1   MHAVVWNLNTSPYTRAPQTLESP---------SCSRNFKVSRFFFRHVSPWR-------K 60

Query: 61  SCRSLRI----NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEI 120
           SCRSLRI    +SRT +IRAVAT NSALELPLTAENVESVLDEVRPYLIADGGNVALHEI
Sbjct: 61  SCRSLRIRLPSSSRTRLIRAVATPNSALELPLTAENVESVLDEVRPYLIADGGNVALHEI 120

Query: 121 DGNVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEK 180
           DGN+VRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIAD ETGLELNE+NIEK
Sbjct: 121 DGNIVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADVETGLELNEENIEK 180

Query: 181 VLEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQ 238
           VLEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQ
Sbjct: 181 VLEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQ 227

[Close]

BLAST of Cp4.1LG01g16440 vs. NCBI nr
Match: gi|449435134|ref|XP_004135350.1| (PREDICTED: nifU-like protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 347.1 bits (889), Expect = 2.5e-92
Identity = 199/237 (83.97%), Postives = 207/237 (87.34%), Query Frame = 1


Query: 6   LNSSPYHRAPQTLQSPPSSSSSSSSSSSRAFEISSFFV-RHVSPSRQRTPLCQRSCRSLR 65
           LN+SPY R+PQTL+SP         S SR F++S FFV RHVSP R       +SCRSLR
Sbjct: 8   LNTSPYTRSPQTLESP---------SCSRNFKVSRFFVLRHVSPWR-------KSCRSLR 67

Query: 66  I----NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 125
           I    +SRT  IRAVAT NSALELPLT ENVESVLDEVRPYLIADGGNVALHEIDGNVVR
Sbjct: 68  IRLPSSSRTRFIRAVATPNSALELPLTVENVESVLDEVRPYLIADGGNVALHEIDGNVVR 127

Query: 126 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR 185
           LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNE+NIEKVLEEIR
Sbjct: 128 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEENIEKVLEEIR 187

Query: 186 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 238
           PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS
Sbjct: 188 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 228

[Close]

BLAST of Cp4.1LG01g16440 vs. NCBI nr
Match: gi|255576215|ref|XP_002529001.1| (PREDICTED: nifU-like protein 2, chloroplastic [Ricinus communis])

HSP 1 Score: 323.6 bits (828), Expect = 3.0e-85
Identity = 186/236 (78.81%), Postives = 198/236 (83.90%), Query Frame = 1


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSSSSSSRAFEISSFFVRHVSPSRQRTPLCQRSC 60
           M  +V+N + Y R  QTL S PSSS        R F+ SS F   VS +R R  L +  C
Sbjct: 1   MQAVVINPT-YSRPHQTLDSAPSSS--------RPFKSSSLFSARVSLNRGRNHLRRIPC 60

Query: 61  RSLRINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120
           RS+R+  R  V+RAVAT NSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR
Sbjct: 61  RSVRLTRRL-VVRAVATPNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120

Query: 121 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR 180
           LKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIADEETGLELNE+NIEKVLEEIR
Sbjct: 121 LKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEENIEKVLEEIR 180

Query: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 237
           PYLVGAAGGSLELV IEEPI K+RITGPAAGVMTVRVAVTQKLREKIP+IAAVQLL
Sbjct: 181 PYLVGAAGGSLELVAIEEPIAKIRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 226

[Close]

BLAST of Cp4.1LG01g16440 vs. NCBI nr
Match: gi|802562967|ref|XP_012066647.1| (PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas])

HSP 1 Score: 321.6 bits (823), Expect = 1.1e-84
Identity = 188/240 (78.33%), Postives = 197/240 (82.08%), Query Frame = 1


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSSSSSSRAFEISSFFVRHVSPSRQRTPLCQRSC 60
           M  +VLN   Y RA QT  SP         SSS  F+ SS F   VS  R+R  L +  C
Sbjct: 1   MQAVVLNPI-YCRAQQTPDSP---------SSSHPFKSSSLFATQVSLKRERNQLRRIPC 60

Query: 61  RSLRIN----SRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG 120
           RSLRI     +R  V+RAVAT  SALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG
Sbjct: 61  RSLRIRLPAFNRRLVLRAVATPESALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG 120

Query: 121 NVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVL 180
           NVVRLKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEP+ADEETGLELNE+NIEKVL
Sbjct: 121 NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPVADEETGLELNEENIEKVL 180

Query: 181 EEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 237
           EEIRPYLVGAAGGSLELV IEEPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLL
Sbjct: 181 EEIRPYLVGAAGGSLELVAIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 230

[Close]

BLAST of Cp4.1LG01g16440 vs. NCBI nr
Match: gi|641828665|gb|KDO47808.1| (hypothetical protein CISIN_1g026830mg [Citrus sinensis])

HSP 1 Score: 315.5 bits (807), Expect = 8.1e-83
Identity = 182/240 (75.83%), Postives = 198/240 (82.50%), Query Frame = 1


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSSSSSSRAFEISSFFVRHVSPSRQRTPLCQRSC 60
           M  +VLN S Y R  QTL SP  S  +S S+ S       FF   VS +R R P+C  SC
Sbjct: 1   MQGVVLNPS-YSRPHQTLDSPSCSRPASKSTKS-------FFGERVSLTRWRNPVCHSSC 60

Query: 61  RSLRIN----SRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG 120
           R L I     +R  VI+AVAT +SA+ELPLTAEN+ESVLDE+RPYLI+DGGNVALHEIDG
Sbjct: 61  RLLLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDG 120

Query: 121 NVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVL 180
           NVVRLKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVE +ADEETGLELNE+NIEKVL
Sbjct: 121 NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNEENIEKVL 180

Query: 181 EEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 237
           EEIRPYLVGAAGGSLELV I+EPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLL
Sbjct: 181 EEIRPYLVGAAGGSLELVTIDEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 232

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NIFU2_ARATH	1.4e-71	65.98	NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1	[more]
NIFU1_ORYSJ	1.9e-60	58.77	NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1...	[more]
NIFU3_ARATH	7.9e-54	59.35	NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1	[more]
NIFU1_ARATH	2.6e-20	37.63	NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1	[more]
YUTI_BACSU	8.5e-16	52.86	Putative nitrogen fixation protein YutI OS=Bacillus subtilis (strain 168) GN=yut...	[more]

BLAST of Cp4.1LG01g16440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRX2_CUCSA	1.8e-92	83.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G586560 PE=4 SV=1	[more]
B9SSN2_RICCO	2.1e-85	78.81	Nitrogen fixation protein nifU, putative OS=Ricinus communis GN=RCOM_1374380 PE=...	[more]
A0A067LEA0_JATCU	7.9e-85	78.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00216 PE=4 SV=1	[more]
A0A067DYA7_CITSI	5.6e-83	75.83	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026830mg PE=4 SV=1	[more]
V4T5X3_9ROSI	7.4e-83	76.25	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002359mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g16440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49940.1	8.1e-73	65.98	NIFU-like protein 2	[more]
AT4G25910.1	4.5e-55	59.35	NFU domain protein 3	[more]
AT4G01940.1	1.4e-21	37.63	NFU domain protein 1	[more]
AT1G51390.1	7.0e-08	36.71	NFU domain protein 5	[more]
AT3G20970.1	1.2e-07	33.64	NFU domain protein 4	[more]

BLAST of Cp4.1LG01g16440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090369\|ref\|XP_008445979.1\|	3.0e-93	82.30	PREDICTED: nifU-like protein 2, chloroplastic [Cucumis melo]	[more]
gi\|449435134\|ref\|XP_004135350.1\|	2.5e-92	83.97	PREDICTED: nifU-like protein 2, chloroplastic [Cucumis sativus]	[more]
gi\|255576215\|ref\|XP_002529001.1\|	3.0e-85	78.81	PREDICTED: nifU-like protein 2, chloroplastic [Ricinus communis]	[more]
gi\|802562967\|ref\|XP_012066647.1\|	1.1e-84	78.33	PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]	[more]
gi\|641828665\|gb\|KDO47808.1\|	8.1e-83	75.83	hypothetical protein CISIN_1g026830mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051536	iron-sulfur cluster binding
GO:0005506	iron ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016226	iron-sulfur cluster assembly

Vocabulary: **INTERPRO**
Term	Definition
IPR001075	NIF_FeS_clus_asmbl_NifU_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0016226	iron-sulfur cluster assembly
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0005198	structural molecule activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16440.1	Cp4.1LG01g16440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	PRODOM	PD002830		coord: 95..159 score: 7.0E-31coord: 176..237 score: 5.0
IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	PFAM	PF01106	NifU	coord: 172..234 score: 3.8E-13coord: 91..156 score: 2.2
None	No IPR available	PANTHER	PTHR31942	FAMILY NOT NAMED	coord: 50..237 score: 1.0E
None	No IPR available	PANTHER	PTHR31942:SF30	SUBFAMILY NOT NAMED	coord: 50..237 score: 1.0E
None	No IPR available	unknown	SSF117916	Fe-S cluster assembly (FSCA) domain-like	coord: 166..235 score: 3.71E-16coord: 88..162 score: 2.11

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g16440	Cucsa.076090	Cucumber (Gy14) v1	cgycpeB0123
Cp4.1LG01g16440	CmaCh18G006740	Cucurbita maxima (Rimu)	cmacpeB431
Cp4.1LG01g16440	CmaCh04G018600	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g16440	CmoCh04G019580	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g16440	CmoCh18G006490	Cucurbita moschata (Rifu)	cmocpeB393
Cp4.1LG01g16440	Cla022934	Watermelon (97103) v1	cpewmB463
Cp4.1LG01g16440	Csa5G586560	Cucumber (Chinese Long) v2	cpecuB440
Cp4.1LG01g16440	MELO3C011825	Melon (DHL92) v3.5.1	cpemeB364
Cp4.1LG01g16440	ClCG11G013330	Watermelon (Charleston Gray)	cpewcgB364
Cp4.1LG01g16440	CSPI05G21030	Wild cucumber (PI 183967)	cpecpiB440
Cp4.1LG01g16440	Lsi04G007130	Bottle gourd (USVL1VR-Ls)	cpelsiB353
Cp4.1LG01g16440	MELO3C011825.2	Melon (DHL92) v3.6.1	cpemedB424
Cp4.1LG01g16440	CsaV3_5G029830	Cucumber (Chinese Long) v3	cpecucB0544
Cp4.1LG01g16440	BhiUN887G6	Wax gourd	cpewgoB0497
Cp4.1LG01g16440	CsGy5G020570	Cucumber (Gy14) v2	cgybcpeB649
Cp4.1LG01g16440	Carg21207	Silver-seed gourd	carcpeB0971
Cp4.1LG01g16440	Carg24421	Silver-seed gourd	carcpeB0196

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g16440	Cp4.1LG09g05700	Cucurbita pepo (Zucchini)	cpecpeB033

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g16440	Wild cucumber (PI 183967)	cpecpiB426