Carg24421 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24421
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	nifU-like protein 2, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_293 : 131933 .. 133865 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCCCATGGTGTTGAATTCCTCCCCTTACCACAGAGCCCCGCAAACCCTTCAATCTCCTCCTTCTTCTTCTTCTTCTTCTCGCGCCTTCGAGGTCCCTTTCCTTTCCCTCTTTTACTCCTTCGTTTTCTGTTCCTCCTAACCAAATTGACAAGTTCAGATCTGGAATATCTTGTAGATCTCCTCCTTCTTCGTCCGCCATGTTTCGCCTTCAAGACAGCGCAGTCCTCTTTGCCGGAGATCATGTCGTTCCCTTCGAATTAACTCACGCACGCCAGGTACTATTTCTTCATTCCTCCTATTGGATTGTGTTGGATTCGCATTAAGTCCTGGTTGTTGAATCTATCGGATGTTTTGTTTTTGTTTGGTAAATTGCTCGCTCTTAGGGTAGATATGCGATTGGTTATCGTAGATCTTAGAACGAAGCCCCTGCCCAATCCTTTTTCTCCTGAGATTGCCAATCTTTGTCGTATGATTCAAAATTTTCTGTTTTCAGTTATTAGAGCCGTCGCAACTTCCAATTCGGCACTGGAATTGCCGCTGACTGCAGAAAATGTTGAAAGTGTGCTGGATGAGGTTCGACCATATCTTATTGCGGATGGTGGTAATGTGGCATTACATGAAATAGACGGAAATGTTGTACGGTTGAAGCTACAAGGAGCATGTGGCTCATGTCCGAGTTCTGTTACGACTATGAAGATGGGAATTGAACGGCGTTTGATGGAGAAGATCCCTGAAATAGTTGCTGTGGAACCAATAGCAGATGAGGAAACTGGATTGGAGCTCAACGAGGACAATATAGAGAAGGTAAATCAATGTTCACTCTCCATCAGGCGTATTCATTCTATGATTTAGATGCAACTTAAAATTGGTTTCTGAATCGTATTTTTGCCTTGCATCAACCCACTTGTAATCTCTGACCTATAGACGGCTTATAATGGACCCTTCAAGGTATTTGAACATTTTTTGGGAGGAAGAAGCACAATGGTATAGCTCAAACAGGTTCTTTGATATATGTGATTATTGTGAAATTAAGGGTAGGATTAAGCTAGCATTCTTGGTTAAGCTTGCAGCATTTGTAGACAATGAACCTGATAGTAATGCAACACAACGCTTGAATTTGCCTGTCATCATATGAAACCCAAGGGGCTGTATAATCGAATCGTACTGGTAGGCTATCTTTGAAATGCTTATTACTCCTTGTCATGTGATATATTTCCTAGCCCGTCTCATCCTTGCATCCATCCGAGTTGGTTGGTATTCCTTGTCACTTGGATGGGTTGTAATTCCATCGTTATTATTATCTATTCAATCTTGATGGAGATTCCAATGCCTCTTCCAACCTTAATGAAATGTTGGAAAGAAAGACTCACTCTTGTTTGTACAATTATGATTGAATGTTATTATTGCTTATTTTTCCAGTGAATGCCATAAGGTCAATTTAGAGTACGAATTCAGAAGCTGAGTTTTCTTTTTGCCCCTTTCTTAGGTACTGGAAGAGATAAGACCTTATCTTGTCGGGGCAGCGGGAGGATCTCTCGAACTCGTGGGTATCGAGGAGCCAATAGTTAAAGTTCGGATCACAGGGCCAGCAGCTGGGGTCATGACAGTGCGTGTGGCTGTTACACAAAAATTGCGAGAGAAGATACCATCCATAGCCGCAGTTCAACTTTTGTCATAATGAATCTACAGAATGCGAGGAGATGTGAATAGTTCTTCATTATTCAATTAGAATAGAAACTCGTCGAATTTGTGTATCATGGTTGCCTCGAGGTATCCTGATTGTGTTATTGGCGCTGTATTTATGTAAAATGTAGCCTCGTGAACAATTTTTTAGATTATTCCGTACAATTTGCTTTCATAAGGGCACAAATAATCTGAAAAAATTGTAAATCTCATTTCTTTACAATATGGATTACAACGAGTGGACT

mRNA sequence

ATGCATCCCATGGTGTTGAATTCCTCCCCTTACCACAGAGCCCCGCAAACCCTTCAATCTCCTCCTTCTTCTTCTTCTTCTTCTCGCGCCTTCGAGATCTCCTCCTTCTTCGTCCGCCATGTTTCGCCTTCAAGACAGCGCAGTCCTCTTTGCCGGAGATCATGTCGTTCCCTTCGAATTAACTCACGCACGCCAGTTATTAGAGCCGTCGCAACTTCCAATTCGGCACTGGAATTGCCGCTGACTGCAGAAAATGTTGAAAGTGTGCTGGATGAGGTTCGACCATATCTTATTGCGGATGGTGGTAATGTGGCATTACATGAAATAGACGGAAATGTTGTACGGTTGAAGCTACAAGGAGCATGTGGCTCATGTCCGAGTTCTGTTACGACTATGAAGATGGGAATTGAACGGCGTTTGATGGAGAAGATCCCTGAAATAGTTGCTGTGGAACCAATAGCAGATGAGGAAACTGGATTGGAGCTCAACGAGGACAATATAGAGAAGGTACTGGAAGAGATAAGACCTTATCTTGTCGGGGCAGCGGGAGGATCTCTCGAACTCGTGGGTATCGAGGAGCCAATAGTTAAAGTTCGGATCACAGGGCCAGCAGCTGGGGTCATGACAGTGCGTGTGGCTGTTACACAAAAATTGCGAGAGAAGATACCATCCATAGCCGCAGTTCAACTTTTGTCATAATGAATCTACAGAATGCGAGGAGATGTGAATAGTTCTTCATTATTCAATTAGAATAGAAACTCGTCGAATTTGTGTATCATGGTTGCCTCGAGGTATCCTGATTGTGTTATTGGCGCTGTATTTATGTAAAATGTAGCCTCGTGAACAATTTTTTAGATTATTCCGTACAATTTGCTTTCATAAGGGCACAAATAATCTGAAAAAATTGTAAATCTCATTTCTTTACAATATGGATTACAACGAGTGGACT

Coding sequence (CDS)

ATGCATCCCATGGTGTTGAATTCCTCCCCTTACCACAGAGCCCCGCAAACCCTTCAATCTCCTCCTTCTTCTTCTTCTTCTTCTCGCGCCTTCGAGATCTCCTCCTTCTTCGTCCGCCATGTTTCGCCTTCAAGACAGCGCAGTCCTCTTTGCCGGAGATCATGTCGTTCCCTTCGAATTAACTCACGCACGCCAGTTATTAGAGCCGTCGCAACTTCCAATTCGGCACTGGAATTGCCGCTGACTGCAGAAAATGTTGAAAGTGTGCTGGATGAGGTTCGACCATATCTTATTGCGGATGGTGGTAATGTGGCATTACATGAAATAGACGGAAATGTTGTACGGTTGAAGCTACAAGGAGCATGTGGCTCATGTCCGAGTTCTGTTACGACTATGAAGATGGGAATTGAACGGCGTTTGATGGAGAAGATCCCTGAAATAGTTGCTGTGGAACCAATAGCAGATGAGGAAACTGGATTGGAGCTCAACGAGGACAATATAGAGAAGGTACTGGAAGAGATAAGACCTTATCTTGTCGGGGCAGCGGGAGGATCTCTCGAACTCGTGGGTATCGAGGAGCCAATAGTTAAAGTTCGGATCACAGGGCCAGCAGCTGGGGTCATGACAGTGCGTGTGGCTGTTACACAAAAATTGCGAGAGAAGATACCATCCATAGCCGCAGTTCAACTTTTGTCATAA

Protein sequence

MHPMVLNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSLRINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS

Homology

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BLAST of Carg24421 vs. NCBI nr
Match: XP_022957471.1 (nifU-like protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 433.3 bits (1113), Expect = 5.1e-118
Identity = 231/232 (99.57%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSLRI 60
           M PMVLNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSLRI
Sbjct: 1   MQPMVLNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSLRI 60

Query: 61  NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQG 120
           NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQG
Sbjct: 61  NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQG 120

Query: 121 ACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYLVG 180
           ACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYLVG
Sbjct: 121 ACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYLVG 180

Query: 181 AAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 233
           AAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS
Sbjct: 181 AAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 232

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BLAST of Carg24421 vs. NCBI nr
Match: XP_022998589.1 (nifU-like protein 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 422.5 bits (1085), Expect = 9.0e-115
Identity = 228/234 (97.44%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSS--SSRAFEISSFFVRHVSPSRQRSPLCRRSCRSL 60
           MHPMVLNSSPYHRAPQTLQSP SSSS  SSRAF+ISSFFVRHVSPSRQRS LCRRSCRSL
Sbjct: 1   MHPMVLNSSPYHRAPQTLQSPSSSSSSFSSRAFKISSFFVRHVSPSRQRSLLCRRSCRSL 60

Query: 61  RINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKL 120
           RINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKL
Sbjct: 61  RINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKL 120

Query: 121 QGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYL 180
           QGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYL
Sbjct: 121 QGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYL 180

Query: 181 VGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 233
           +GAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS
Sbjct: 181 IGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 234

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BLAST of Carg24421 vs. NCBI nr
Match: XP_023517551.1 (nifU-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 405.6 bits (1041), Expect = 1.1e-109
Identity = 220/237 (92.83%), Postives = 222/237 (93.67%), Query Frame = 0


Query: 1   MHPMVLNSSPYHRAPQTLQ-----SPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSC 60
           MHPMVLNSSPYHRAPQTLQ               AFEISSFFVRHVSPSRQR+PLC+RSC
Sbjct: 1   MHPMVLNSSPYHRAPQTLQXXXXXXXXXXXXXXXAFEISSFFVRHVSPSRQRTPLCQRSC 60

Query: 61  RSLRINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120
           RSLRINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR
Sbjct: 61  RSLRINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120

Query: 121 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR 180
           LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR
Sbjct: 121 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR 180

Query: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 233
           PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS
Sbjct: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 237

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BLAST of Carg24421 vs. NCBI nr
Match: XP_022151795.1 (nifU-like protein 2, chloroplastic [Momordica charantia])

HSP 1 Score: 378.6 bits (971), Expect = 1.5e-101
Identity = 208/236 (88.14%), Postives = 218/236 (92.37%), Query Frame = 0


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSLRI 60
           MH +VLNSSPY RAPQ L++P    SSSRAF+IS  F+ HVSPSR+R+PL R+SCRS RI
Sbjct: 1   MHAVVLNSSPYTRAPQPLETP----SSSRAFKISRPFLSHVSPSRERTPLWRKSCRSFRI 60

Query: 61  ----NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL 120
               NSR PV+RAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL
Sbjct: 61  RLPTNSRRPVMRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL 120

Query: 121 KLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP 180
           KLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP
Sbjct: 121 KLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP 180

Query: 181 YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 233
           YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLLS
Sbjct: 181 YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 232

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BLAST of Carg24421 vs. NCBI nr
Match: XP_008445979.1 (PREDICTED: nifU-like protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 354.0 bits (907), Expect = 3.9e-94
Identity = 200/238 (84.03%), Postives = 211/238 (88.66%), Query Frame = 0


Query: 1   MHPMV--LNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSL 60
           MH +V  LN+SPY RAPQTL+SP    S SR F++S FF RHVSP        R+SCRSL
Sbjct: 1   MHAVVWNLNTSPYTRAPQTLESP----SCSRNFKVSRFFFRHVSP-------WRKSCRSL 60

Query: 61  RI----NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVV 120
           RI    +SRT +IRAVAT NSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGN+V
Sbjct: 61  RIRLPSSSRTRLIRAVATPNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNIV 120

Query: 121 RLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEI 180
           RLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIAD ETGLELNE+NIEKVLEEI
Sbjct: 121 RLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADVETGLELNEENIEKVLEEI 180

Query: 181 RPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 233
           RPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLLS
Sbjct: 181 RPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 227

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BLAST of Carg24421 vs. TAIR10
Match: AT5G49940.1 (NIFU-like protein 2)

HSP 1 Score: 275.4 bits (703), Expect = 3.2e-74
Identity = 159/235 (67.66%), Postives = 183/235 (77.87%), Query Frame = 0


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSRAF-EISSFFVRHVSPSRQRSPLCR---RSCR 60
           M  + LN +   R P     P SSSS    F +I S        +R  +PL R   R   
Sbjct: 1   MQLLTLNPAAISRTPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLS 60

Query: 61  SLRINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL 120
           S ++  R+ V++AVAT +  LE+PLT ENVESVLDE+RPYL++DGGNVALHEIDGN+VR+
Sbjct: 61  SRQLFRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRV 120

Query: 121 KLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP 180
           KLQGACGSCPSS  TMKMGIERRLMEKIPEIVAVE + DEETGLELNE+NIEKVLEEIRP
Sbjct: 121 KLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRP 180

Query: 181 YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 232
           YL+G A GSL+LV IE+PIVK+RITGPAAGVMTVRVAVTQKLREKIPSIAAVQL+
Sbjct: 181 YLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235

[Close]

BLAST of Carg24421 vs. TAIR10
Match: AT4G25910.1 (NFU domain protein 3)

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-56
Identity = 117/168 (69.64%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 65  PVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGS 124
           P+ +     + +  +PLT ENVE VLDEVRP L+ADGGNVALHEIDG VV LKLQGACGS
Sbjct: 68  PLRKRTVFGHVSCVMPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGS 127

Query: 125 CPSSVTTMKMGIERRLMEKIPEIVAVEPIADEET-GLELNEDNIEKVLEEIRPYLVGAAG 184
           CPSS  T+KMGIE RL +KIPEI++VE   + ET GLELN++NIEKVL E+RPYL G  G
Sbjct: 128 CPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGG 187

Query: 185 GSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 232
           G LELV I+  +VKVR+TGPAAGVMTVRVA+TQKLRE IPSI AVQLL
Sbjct: 188 GGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLL 235

[Close]

BLAST of Carg24421 vs. TAIR10
Match: AT4G01940.1 (NFU domain protein 1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-20
Identity = 73/212 (34.43%), Postives = 119/212 (56.13%), Query Frame = 0


Query: 13  RAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSC--RSLRINSRTPVIRAV 72
           ++  T    P  S  + +F + +   RH+S    R+ +  RS    S +    +P+   V
Sbjct: 18  KSSSTRNGFPVISDQNPSFVLFANKRRHIS----RTAIFHRSAISGSSQGEKISPLASGV 77

Query: 73  ATS-NSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSV 132
           ++   SA    LT +NV+ VL++VRP+LI+DGGNV +  ++  VV LKLQGAC SCPSS 
Sbjct: 78  SSGLYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSS 137

Query: 133 TTMKMGIERRLMEKIPEIVA-VEPIADEETGLELNEDNIEKVLEEIRPYLVGAAGGSLEL 192
           TTM MGIER L EK  + +  +  + DEE   ++  + +   L+ +RP  +   GGS+E+
Sbjct: 138 TTMTMGIERVLKEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRP-AIKNYGGSVEV 197

Query: 193 VGIEEPIVKVRITGPAAGVMTVRVAVTQKLRE 221
           + +E     V+  GP +  M ++ A+ +K ++
Sbjct: 198 LSVEGEDCVVKYVGPESIGMGIQAAIKEKFKD 223

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BLAST of Carg24421 vs. TAIR10
Match: AT1G51390.1 (NFU domain protein 5)

HSP 1 Score: 55.1 bits (131), Expect = 6.8e-08
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 82  TAENVESVLD-EVRPYLIADGGNVAL--HEIDGNVVRLKLQGACGSCPSSVTTMKMGIER 141
           T   ++ +L+  +RP +  DGG++     + +  +V+L++QGAC  CPSS  T+K GIE 
Sbjct: 187 TVAMIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIEN 246

Query: 142 RLMEKIPEIVAVEPIADEE 158
            LM  + E+  VE   D E
Sbjct: 247 MLMHYVSEVKGVEQEFDGE 265

[Close]

BLAST of Carg24421 vs. TAIR10
Match: AT3G20970.1 (NFU domain protein 4)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-07
Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 54  SCRSLRINSRTPVIRAVATSNSALELPLTAENVESVLD-EVRPYLIADGGNVALHEID-- 113
           S + L ++S+    +  A S    E   T   ++ +L+  +RP +  DGG++     D  
Sbjct: 167 SGQPLFLDSQAAAAKDTAISEDDSE---TVAMIKELLETRIRPAVQDDGGDIEYCGFDPE 226

Query: 114 GNVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEE 158
             +V+L++QGAC  CPSS  T+K GIE  LM  + E+  VE   D E
Sbjct: 227 SGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVEQEFDGE 270

[Close]

BLAST of Carg24421 vs. Swiss-Prot
Match: sp|Q93W20|NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 5.8e-73
Identity = 159/235 (67.66%), Postives = 183/235 (77.87%), Query Frame = 0


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSRAF-EISSFFVRHVSPSRQRSPLCR---RSCR 60
           M  + LN +   R P     P SSSS    F +I S        +R  +PL R   R   
Sbjct: 1   MQLLTLNPAAISRTPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLS 60

Query: 61  SLRINSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL 120
           S ++  R+ V++AVAT +  LE+PLT ENVESVLDE+RPYL++DGGNVALHEIDGN+VR+
Sbjct: 61  SRQLFRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRV 120

Query: 121 KLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP 180
           KLQGACGSCPSS  TMKMGIERRLMEKIPEIVAVE + DEETGLELNE+NIEKVLEEIRP
Sbjct: 121 KLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRP 180

Query: 181 YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 232
           YL+G A GSL+LV IE+PIVK+RITGPAAGVMTVRVAVTQKLREKIPSIAAVQL+
Sbjct: 181 YLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235

[Close]

BLAST of Carg24421 vs. Swiss-Prot
Match: sp|Q84LK7|NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.9e-61
Identity = 129/196 (65.82%), Postives = 150/196 (76.53%), Query Frame = 0


Query: 54  SCRSLRINSRTPVIRAVATSN-----------------SALELPLTAENVESVLDEVRPY 113
           SCRS    S +P  R VA  N                 +A++LPLTA NVESVLD+VRPY
Sbjct: 35  SCRS----SSSPATRLVAAPNHQRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPY 94

Query: 114 LIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADE 173
           L ADGG+VALHEI GNVVRLKLQGACGSCPSS+ T+K GIERRLMEKIP++ AVEP+ D+
Sbjct: 95  LTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPDVAAVEPVTDK 154

Query: 174 ETGLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQ 233
           ETGLELNE+N+EKVL EIRPYL G  GG L+ + I+ PIVKVR+TGPAA V TVR+AV++
Sbjct: 155 ETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSK 214

[Close]

BLAST of Carg24421 vs. Swiss-Prot
Match: sp|Q84RQ7|NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.4e-55
Identity = 117/168 (69.64%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 65  PVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGS 124
           P+ +     + +  +PLT ENVE VLDEVRP L+ADGGNVALHEIDG VV LKLQGACGS
Sbjct: 68  PLRKRTVFGHVSCVMPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGS 127

Query: 125 CPSSVTTMKMGIERRLMEKIPEIVAVEPIADEET-GLELNEDNIEKVLEEIRPYLVGAAG 184
           CPSS  T+KMGIE RL +KIPEI++VE   + ET GLELN++NIEKVL E+RPYL G  G
Sbjct: 128 CPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGG 187

Query: 185 GSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 232
           G LELV I+  +VKVR+TGPAAGVMTVRVA+TQKLRE IPSI AVQLL
Sbjct: 188 GGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLL 235

[Close]

BLAST of Carg24421 vs. Swiss-Prot
Match: sp|Q93W77|NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-19
Identity = 73/212 (34.43%), Postives = 119/212 (56.13%), Query Frame = 0


Query: 13  RAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSC--RSLRINSRTPVIRAV 72
           ++  T    P  S  + +F + +   RH+S    R+ +  RS    S +    +P+   V
Sbjct: 18  KSSSTRNGFPVISDQNPSFVLFANKRRHIS----RTAIFHRSAISGSSQGEKISPLASGV 77

Query: 73  ATS-NSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSV 132
           ++   SA    LT +NV+ VL++VRP+LI+DGGNV +  ++  VV LKLQGAC SCPSS 
Sbjct: 78  SSGLYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSS 137

Query: 133 TTMKMGIERRLMEKIPEIVA-VEPIADEETGLELNEDNIEKVLEEIRPYLVGAAGGSLEL 192
           TTM MGIER L EK  + +  +  + DEE   ++  + +   L+ +RP  +   GGS+E+
Sbjct: 138 TTMTMGIERVLKEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRP-AIKNYGGSVEV 197

Query: 193 VGIEEPIVKVRITGPAAGVMTVRVAVTQKLRE 221
           + +E     V+  GP +  M ++ A+ +K ++
Sbjct: 198 LSVEGEDCVVKYVGPESIGMGIQAAIKEKFKD 223

[Close]

BLAST of Carg24421 vs. Swiss-Prot
Match: sp|O32119|YUTI_BACSU (Putative nitrogen fixation protein YutI OS=Bacillus subtilis (strain 168) OX=224308 GN=yutI PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.5e-16
Identity = 37/70 (52.86%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 84  ENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIERRLMEK 143
           E V+ VLD++RP+L+ DGG+  L ++D  +V+L+L GACGSCPSS  T+K GIER L+E+
Sbjct: 41  EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERALLEE 100

Query: 144 IPEIVAVEPI 154
           +P +V VE +
Sbjct: 101 VPGVVEVEQV 110

[Close]

BLAST of Carg24421 vs. TrEMBL
Match: tr|A0A1S3BEN3|A0A1S3BEN3_CUCME (nifU-like protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488846 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 2.6e-94
Identity = 200/238 (84.03%), Postives = 211/238 (88.66%), Query Frame = 0


Query: 1   MHPMV--LNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSL 60
           MH +V  LN+SPY RAPQTL+SP    S SR F++S FF RHVSP        R+SCRSL
Sbjct: 1   MHAVVWNLNTSPYTRAPQTLESP----SCSRNFKVSRFFFRHVSP-------WRKSCRSL 60

Query: 61  RI----NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVV 120
           RI    +SRT +IRAVAT NSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGN+V
Sbjct: 61  RIRLPSSSRTRLIRAVATPNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNIV 120

Query: 121 RLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEI 180
           RLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIAD ETGLELNE+NIEKVLEEI
Sbjct: 121 RLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADVETGLELNEENIEKVLEEI 180

Query: 181 RPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 233
           RPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLLS
Sbjct: 181 RPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 227

[Close]

BLAST of Carg24421 vs. TrEMBL
Match: tr|A0A0A0KRX2|A0A0A0KRX2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G586560 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 2.2e-93
Identity = 199/232 (85.78%), Postives = 207/232 (89.22%), Query Frame = 0


Query: 6   LNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFV-RHVSPSRQRSPLCRRSCRSLRI---- 65
           LN+SPY R+PQTL+SP    S SR F++S FFV RHVSP        R+SCRSLRI    
Sbjct: 8   LNTSPYTRSPQTLESP----SCSRNFKVSRFFVLRHVSP-------WRKSCRSLRIRLPS 67

Query: 66  NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQG 125
           +SRT  IRAVAT NSALELPLT ENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQG
Sbjct: 68  SSRTRFIRAVATPNSALELPLTVENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQG 127

Query: 126 ACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYLVG 185
           ACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNE+NIEKVLEEIRPYLVG
Sbjct: 128 ACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEENIEKVLEEIRPYLVG 187

Query: 186 AAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 233
           AAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS
Sbjct: 188 AAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 228

[Close]

BLAST of Carg24421 vs. TrEMBL
Match: tr|A0A2I4DPU2|A0A2I4DPU2_9ROSI (nifU-like protein 2, chloroplastic OS=Juglans regia OX=51240 GN=LOC108982289 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 6.2e-88
Identity = 178/214 (83.18%), Postives = 195/214 (91.12%), Query Frame = 0


Query: 22  PSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSLRI----NSRTPVIRAVATSNSAL 81
           P SS+SSR+F+ SS F  H+  +R  +P+ R SCRS+ +     SR+PV++AVAT NSA+
Sbjct: 20  PQSSTSSRSFKSSSLFGTHIFLARGHNPVWRNSCRSVSVRFHSRSRSPVVKAVATPNSAV 79

Query: 82  ELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIE 141
           ELPLTAENV+SVLDE+RPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIE
Sbjct: 80  ELPLTAENVDSVLDEIRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVTTMKMGIE 139

Query: 142 RRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEEPIVK 201
           RRLMEKIPEIVAVEPIADEETGLELNE+NIEKVLEEIRPYLVGAAGGSLELV IEEPIVK
Sbjct: 140 RRLMEKIPEIVAVEPIADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIEEPIVK 199

Query: 202 VRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 232
           +RITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL
Sbjct: 200 IRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 233

[Close]

BLAST of Carg24421 vs. TrEMBL
Match: tr|B9SSN2|B9SSN2_RICCO (Nitrogen fixation protein nifU, putative OS=Ricinus communis OX=3988 GN=RCOM_1374380 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.5e-86
Identity = 187/231 (80.95%), Postives = 199/231 (86.15%), Query Frame = 0


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSLRI 60
           M  +V+N + Y R  QTL S P   SSSR F+ SS F   VS +R R+ L R  CRS+R+
Sbjct: 1   MQAVVINPT-YSRPHQTLDSAP---SSSRPFKSSSLFSARVSLNRGRNHLRRIPCRSVRL 60

Query: 61  NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQG 120
             R  V+RAVAT NSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQG
Sbjct: 61  TRRL-VVRAVATPNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQG 120

Query: 121 ACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYLVG 180
           ACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIADEETGLELNE+NIEKVLEEIRPYLVG
Sbjct: 121 ACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEENIEKVLEEIRPYLVG 180

Query: 181 AAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 232
           AAGGSLELV IEEPI K+RITGPAAGVMTVRVAVTQKLREKIP+IAAVQLL
Sbjct: 181 AAGGSLELVAIEEPIAKIRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 226

[Close]

BLAST of Carg24421 vs. TrEMBL
Match: tr|A0A067LEA0|A0A067LEA0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00216 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 4.4e-86
Identity = 189/235 (80.43%), Postives = 198/235 (84.26%), Query Frame = 0


Query: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSLRI 60
           M  +VLN   Y RA QT    P S SSS  F+ SS F   VS  R+R+ L R  CRSLRI
Sbjct: 1   MQAVVLNPI-YCRAQQT----PDSPSSSHPFKSSSLFATQVSLKRERNQLRRIPCRSLRI 60

Query: 61  N----SRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL 120
                +R  V+RAVAT  SALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL
Sbjct: 61  RLPAFNRRLVLRAVATPESALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL 120

Query: 121 KLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP 180
           KLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEP+ADEETGLELNE+NIEKVLEEIRP
Sbjct: 121 KLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPVADEETGLELNEENIEKVLEEIRP 180

Query: 181 YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 232
           YLVGAAGGSLELV IEEPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLL
Sbjct: 181 YLVGAAGGSLELVAIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 230

The following BLAST results are available for this feature:

BLAST of Carg24421 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957471.1	5.1e-118	99.57	nifU-like protein 2, chloroplastic [Cucurbita moschata]	[more]
XP_022998589.1	9.0e-115	97.44	nifU-like protein 2, chloroplastic [Cucurbita maxima]	[more]
XP_023517551.1	1.1e-109	92.83	nifU-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022151795.1	1.5e-101	88.14	nifU-like protein 2, chloroplastic [Momordica charantia]	[more]
XP_008445979.1	3.9e-94	84.03	PREDICTED: nifU-like protein 2, chloroplastic [Cucumis melo]	[more]

BLAST of Carg24421 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49940.1	3.2e-74	67.66	NIFU-like protein 2	[more]
AT4G25910.1	1.4e-56	69.64	NFU domain protein 3	[more]
AT4G01940.1	1.2e-20	34.43	NFU domain protein 1	[more]
AT1G51390.1	6.8e-08	36.71	NFU domain protein 5	[more]
AT3G20970.1	1.5e-07	33.64	NFU domain protein 4	[more]

BLAST of Carg24421 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93W20\|NIFU2_ARATH	5.8e-73	67.66	NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1...	[more]
sp\|Q84LK7\|NIFU1_ORYSJ	3.9e-61	65.82	NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=N...	[more]
sp\|Q84RQ7\|NIFU3_ARATH	2.4e-55	69.64	NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2...	[more]
sp\|Q93W77\|NIFU1_ARATH	2.2e-19	34.43	NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1...	[more]
sp\|O32119\|YUTI_BACSU	8.5e-16	52.86	Putative nitrogen fixation protein YutI OS=Bacillus subtilis (strain 168) OX=224...	[more]

BLAST of Carg24421 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BEN3\|A0A1S3BEN3_CUCME	2.6e-94	84.03	nifU-like protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488846 PE=4 ...	[more]
tr\|A0A0A0KRX2\|A0A0A0KRX2_CUCSA	2.2e-93	85.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G586560 PE=4 SV=1	[more]
tr\|A0A2I4DPU2\|A0A2I4DPU2_9ROSI	6.2e-88	83.18	nifU-like protein 2, chloroplastic OS=Juglans regia OX=51240 GN=LOC108982289 PE=...	[more]
tr\|B9SSN2\|B9SSN2_RICCO	1.5e-86	80.95	Nitrogen fixation protein nifU, putative OS=Ricinus communis OX=3988 GN=RCOM_137...	[more]
tr\|A0A067LEA0\|A0A067LEA0_JATCU	4.4e-86	80.43	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00216 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0016226	iron-sulfur cluster assembly

Vocabulary: **Molecular Function**
Term	Definition
GO:0051536	iron-sulfur cluster binding
GO:0005506	iron ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR034904	FSCA_dom_sf
IPR001075	NIF_FeS_clus_asmbl_NifU_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24421-RA	Carg24421-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	PFAM	PF01106	NifU	coord: 167..229 e-value: 3.2E-13 score: 49.5 coord: 86..151 e-value: 2.0E-26 score: 91.8
IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	PRODOM	PD002830		coord: 90..154 e-value: 6.0E-31 score: 334.0 coord: 171..232 e-value: 5.0E-22 score: 257.0
IPR034904	Fe-S cluster assembly domain superfamily	GENE3D	G3DSA:3.30.300.130		coord: 162..232 e-value: 4.1E-29 score: 102.2
IPR034904	Fe-S cluster assembly domain superfamily	GENE3D	G3DSA:3.30.300.130		coord: 77..161 e-value: 4.2E-35 score: 121.4
IPR034904	Fe-S cluster assembly domain superfamily	SUPERFAMILY	SSF117916	Fe-S cluster assembly (FSCA) domain-like	coord: 161..230
IPR034904	Fe-S cluster assembly domain superfamily	SUPERFAMILY	SSF117916	Fe-S cluster assembly (FSCA) domain-like	coord: 83..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..26
None	No IPR available	PANTHER	PTHR31942:SF30	SUBFAMILY NOT NAMED	coord: 21..232
None	No IPR available	PANTHER	PTHR31942	FAMILY NOT NAMED	coord: 21..232

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24421	Cla022934	Watermelon (97103) v1	carwmB0131
Carg24421	Csa5G586560	Cucumber (Chinese Long) v2	carcuB0148
Carg24421	MELO3C011825	Melon (DHL92) v3.5.1	carmeB0139
Carg24421	ClCG11G013330	Watermelon (Charleston Gray)	carwcgB0131
Carg24421	CSPI05G21030	Wild cucumber (PI 183967)	carcpiB0153
Carg24421	Cucsa.076090	Cucumber (Gy14) v1	carcgyB0166
Carg24421	CmaCh04G018600	Cucurbita maxima (Rimu)	carcmaB0179
Carg24421	CmaCh18G006740	Cucurbita maxima (Rimu)	carcmaB0178
Carg24421	CmoCh04G019580	Cucurbita moschata (Rifu)	carcmoB0187
Carg24421	CmoCh18G006490	Cucurbita moschata (Rifu)	carcmoB0186
Carg24421	Lsi04G007130	Bottle gourd (USVL1VR-Ls)	carlsiB122
Carg24421	Cp4.1LG09g05700	Cucurbita pepo (Zucchini)	carcpeB0195
Carg24421	Cp4.1LG01g16440	Cucurbita pepo (Zucchini)	carcpeB0196
Carg24421	CsGy5G020570	Cucumber (Gy14) v2	carcgybB0146
Carg24421	MELO3C011825.2	Melon (DHL92) v3.6.1	carmedB0143
Carg24421	CsaV3_5G029830	Cucumber (Chinese Long) v3	carcucB0156
Carg24421	Cla97C11G219240	Watermelon (97103) v2	carwmbB0141
Carg24421	BhiUN887G6	Wax gourd	carwgoB0170

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24421	Carg21207	Silver-seed gourd	carcarB160

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24421	Wild cucumber (PI 183967)	carcpiB0152