Cp4.1LG01g16020 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g16020
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 9844282 .. 9845325 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCACTCCCAGTAAATGCCATTACTTCACTTTGAAGACCAATCAACAACGCCCTGCCAACACGACCTGACCCATATCGACAGATCCTTTCCCTTTCTTGAACAAATTTTTGTGTTCCTCTTGCCATCGCCATGTTACACGATCGGTAGGGGACAGATTCTGGCGACCAAAAATGGGGAATTGTGTTCTTATTCGTAGAGACCAAAAATCTGACCCCAAATTCAAGTGGTCGGTCGGTTCCGGTGCGCTCGTCAATGTCCGTGTGCCGATCCCGACCGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCGCCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGGTTCGATTCCAACCCCCTCTTTGATTTTGTTCTTGATTTTTAAGTGATTAATGCAATTTTGTACTTGATTTTAAGTGATTTTGAAATATGGATTAAAATTAATGCAGGTAAGGGCGATGAGATGTTCTTCGATTCTCAGGCTTGGTTGGATTCTGATAACGATGATTTCTTCAGCGTTAACGGAGGTTAGAATTTTAAAAACTTCCATTAGTTTGATTTATGTGAAATTCATGTTAATAATCACGAACCTCCACAATGGTATGATATTGTCATTTTGAACCTAAGCCTCAACAATTTTGATCTTGGCTTGTTGTTTATGAGCAGATAACACGCCGTCGTGCAGCAGCACTCCGATATGGCGTCCGAACGCCGTCGAGACGCCGGCGGTGGAGCCATCGCCGGAGGGAACGAAGAAGCTGCTAATTGAGCTGTTTCGCGAGAGCTTTGATAGCGAGCATGGAAGAACAATTGGGACTGCAACGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAGCAAGCCAAATTGTGGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTTCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCAGTGCACCCT

mRNA sequence

CCCACTCCCAGTAAATGCCATTACTTCACTTTGAAGACCAATCAACAACGCCCTGCCAACACGACCTGACCCATATCGACAGATCCTTTCCCTTTCTTGAACAAATTTTTGTGTTCCTCTTGCCATCGCCATGTTACACGATCGGTAGGGGACAGATTCTGGCGACCAAAAATGGGGAATTGTGTTCTTATTCGTAGAGACCAAAAATCTGACCCCAAATTCAAGTGGTCGGTCGGTTCCGGTGCGCTCGTCAATGTCCGTGTGCCGATCCCGACCGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCGCCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGACGCCGGCGGTGGAGCCATCGCCGGAGGGAACGAAGAAGCTGCTAATTGAGCTGTTTCGCGAGAGCTTTGATAGCGAGCATGGAAGAACAATTGGGACTGCAACGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAGCAAGCCAAATTGTGGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTTCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCAGTGCACCCT

Coding sequence (CDS)

ATGTCCGTGTGCCGATCCCGACCGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCGCCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGACGCCGGCGGTGGAGCCATCGCCGGAGGGAACGAAGAAGCTGCTAATTGAGCTGTTTCGCGAGAGCTTTGATAGCGAGCATGGAAGAACAATTGGGACTGCAACGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAGCAAGCCAAATTGTGGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTTCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCAGTGCACCCT

Protein sequence

MSVCRSRPSSTKPTAGSVPVRRLLIFPARLNSTPAVEPSPEGTKKLLIELFRESFDSEHGRTIGTATSNGHIGVVIMEGNNNNNSKPNCGGRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRGGGPVHP
Homology
[Close]
BLAST of Cp4.1LG01g16020 vs. TrEMBL
Match: A0A0A0KTD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589990 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.7e-27
Identity = 76/128 (59.38%), Postives = 87/128 (67.97%), Query Frame = 1 

Query: 13  PTAGSVPVRRLLIFPARLNSTPAVEPSPEGTKKLLIELFRESFDSEHGRTI-GTATSNGH 72
           P+ GS P+ R    P  + + P    SP+ TKKLL ELF+ESF+ +HGR+I  T  SN H
Sbjct: 100 PSCGSTPIWR----PNTIEAPPTDPSSPKQTKKLLFELFQESFNRDHGRSITSTTISNRH 159

Query: 73  --IGVVIMEGNNNNNSKPNCGGRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSP 132
             I VVIME    NN KP     S+SVKG SAQS  WCIPVPKLARSLSL +KKKRLLSP
Sbjct: 160 NNIEVVIME---TNNKKP----ISKSVKGNSAQSKPWCIPVPKLARSLSLGEKKKRLLSP 216

Query: 133 CRGGGPVH 138
           CRGGG VH
Sbjct: 220 CRGGGQVH 216

[Close]
BLAST of Cp4.1LG01g16020 vs. NCBI nr
Match: gi|449435053|ref|XP_004135310.1| (PREDICTED: uncharacterized protein At3g27210-like [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-26
Identity = 76/128 (59.38%), Postives = 87/128 (67.97%), Query Frame = 1 

Query: 13  PTAGSVPVRRLLIFPARLNSTPAVEPSPEGTKKLLIELFRESFDSEHGRTI-GTATSNGH 72
           P+ GS P+ R    P  + + P    SP+ TKKLL ELF+ESF+ +HGR+I  T  SN H
Sbjct: 100 PSCGSTPIWR----PNTIEAPPTDPSSPKQTKKLLFELFQESFNRDHGRSITSTTISNRH 159

Query: 73  --IGVVIMEGNNNNNSKPNCGGRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSP 132
             I VVIME    NN KP     S+SVKG SAQS  WCIPVPKLARSLSL +KKKRLLSP
Sbjct: 160 NNIEVVIME---TNNKKP----ISKSVKGNSAQSKPWCIPVPKLARSLSLGEKKKRLLSP 216

Query: 133 CRGGGPVH 138
           CRGGG VH
Sbjct: 220 CRGGGQVH 216

[Close]
BLAST of Cp4.1LG01g16020 vs. NCBI nr
Match: gi|659090502|ref|XP_008446050.1| (PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 73/127 (57.48%), Postives = 85/127 (66.93%), Query Frame = 1 

Query: 13  PTAGSVPVRRLLIFPARLNSTPAVEPSPEGTKKLLIELFRESFDSEHGRTIGTAT-SNGH 72
           P+ G+ P+ R    P  + +  A   SP+  KKLL ELF+ESF+ EHGR+I   T SN H
Sbjct: 98  PSCGNTPLWR----PNTIEAPLADPSSPKQRKKLLFELFQESFNREHGRSIANPTISNRH 157

Query: 73  -IGVVIMEGNNNNNSKPNCGGRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPC 132
            I VVIME    N+ KP     S+SVKG S QST WCIPVPKL RSLSL +KKKRLLSPC
Sbjct: 158 NIEVVIMEA---NDKKP----ISKSVKGNSTQSTPWCIPVPKLTRSLSLGEKKKRLLSPC 213

Query: 133 RGGGPVH 138
           RGGG VH
Sbjct: 218 RGGGHVH 213

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g16020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g16020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTD3_CUCSA9.7e-2759.38Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589990 PE=4 SV=1[more]
BLAST of Cp4.1LG01g16020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g16020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435053|ref|XP_004135310.1|1.4e-2659.38PREDICTED: uncharacterized protein At3g27210-like [Cucumis sativus][more]
gi|659090502|ref|XP_008446050.1|3.8e-2457.48PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g16020.1Cp4.1LG01g16020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g16020Cucsa.075590Cucumber (Gy14) v1cgycpeB0123
Cp4.1LG01g16020CmaCh04G018260Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g16020CmoCh04G019230Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g16020Csa5G589990Cucumber (Chinese Long) v2cpecuB440
Cp4.1LG01g16020MELO3C011878Melon (DHL92) v3.5.1cpemeB364
Cp4.1LG01g16020ClCG11G013790Watermelon (Charleston Gray)cpewcgB364
Cp4.1LG01g16020CSPI05G21530Wild cucumber (PI 183967)cpecpiB440
Cp4.1LG01g16020MELO3C011878.2Melon (DHL92) v3.6.1cpemedB424
Cp4.1LG01g16020CsaV3_5G030380Cucumber (Chinese Long) v3cpecucB0544
Cp4.1LG01g16020Bhi07G001518Wax gourdcpewgoB0555
Cp4.1LG01g16020CsGy5G021050Cucumber (Gy14) v2cgybcpeB649
Cp4.1LG01g16020Carg14266Silver-seed gourdcarcpeB0344
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g16020Wax gourdcpewgoB0536
Cp4.1LG01g16020Cucurbita pepo (Zucchini)cpecpeB033
Cp4.1LG01g16020Cucurbita pepo (Zucchini)cpecpeB406
Cp4.1LG01g16020Cucumber (Gy14) v1cgycpeB1041
Cp4.1LG01g16020Cucurbita maxima (Rimu)cmacpeB186
Cp4.1LG01g16020Cucurbita maxima (Rimu)cmacpeB431
Cp4.1LG01g16020Cucurbita moschata (Rifu)cmocpeB162
Cp4.1LG01g16020Cucurbita moschata (Rifu)cmocpeB397
Cp4.1LG01g16020Wild cucumber (PI 183967)cpecpiB383
Cp4.1LG01g16020Cucumber (Chinese Long) v2cpecuB384
Cp4.1LG01g16020Bottle gourd (USVL1VR-Ls)cpelsiB353
Cp4.1LG01g16020Bottle gourd (USVL1VR-Ls)cpelsiB383
Cp4.1LG01g16020Watermelon (Charleston Gray)cpewcgB418
Cp4.1LG01g16020Watermelon (97103) v1cpewmB397
Cp4.1LG01g16020Watermelon (97103) v1cpewmB463
Cp4.1LG01g16020Melon (DHL92) v3.5.1cpemeB402
Cp4.1LG01g16020Cucumber (Gy14) v2cgybcpeB210
Cp4.1LG01g16020Melon (DHL92) v3.6.1cpemedB467
Cp4.1LG01g16020Silver-seed gourdcarcpeB0888
Cp4.1LG01g16020Silver-seed gourdcarcpeB0971
Cp4.1LG01g16020Cucumber (Chinese Long) v3cpecucB0478