CmaCh04G018260 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G018260
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Chromosome 3B, genomic scaffold, cultivar Chinese Spring
Location	Cma_Chr04 : 9218159 .. 9219201 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATTACTTCACTTTGAAGACCAATCAACAGCTCCCTGCCAACAGGACCTGACCCATATCGCCAGATCCTTTCCCTTTCTTGAACAAATTTCTGTGTTCCTCTTGTCATCGCCATGTTAGACGATCGGTAGGGGACAGTTTCTGGCGACCAAAAATGGGGAATTGTGTTCTTATTCGTCGAGACCAAAAATCTGACCCTAAATTCAAGTGGTCGGTCGGTTCCGGTGCGCTCGTCAATGTCCGTGTGCCGATGCCGACTGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCACCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGGTTCGATTCCAGCCCCGTCTTTGATTTTTGTTCTTGATTTTAAGTGATTAATGCAATTTTGTTCTTGATTTTAAGTGATTTTGAAATATGGATTAAAATTAATGCAGGTAAGGGCGATGAGATGTTCTTCGATTCTCAGGCTTGGTTGGATTCTGATAACGATGATTTCTTCAGCGTTAATGGAGGTTAGAATTTTAAAAACTTGGATGAGTTCGATTTCTATGAAATTTATATTAATAATCATCGACTGTCATTTTTAGTATAAGCTATTGTAAGATTCATACCAACAATCTTCAACAATTCAGATCTTGGCTTGTTGTTTACGAGCAGATAACACGCCGTCGTGCAGCAGCACTCCGATATGGCGTCCAAACGCCATCGAGACGCCGGCGGTGGAGCCATCGCCGGAAGGAACGAAGAAACTGCTAATTGAGCTGTTTCGCGAGAGCTTCGATAGCGAGCATGGAAGAACAATTGGGACTGCAACGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAATAATAGCAAGCCAAATTGTAGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTTCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCAGTGCACCCTTGA

mRNA sequence

GCCATTACTTCACTTTGAAGACCAATCAACAGCTCCCTGCCAACAGGACCTGACCCATATCGCCAGATCCTTTCCCTTTCTTGAACAAATTTCTGTGTTCCTCTTGTCATCGCCATGTTAGACGATCGGTAGGGGACAGTTTCTGGCGACCAAAAATGGGGAATTGTGTTCTTATTCGTCGAGACCAAAAATCTGACCCTAAATTCAAGTGGTCGGTCGGTTCCGGTGCGCTCGTCAATGTCCGTGTGCCGATGCCGACTGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCACCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGGTAAGGGCGATGAGATGTTCTTCGATTCTCAGGCTTGGTTGGATTCTGATAACGATGATTTCTTCAGCGTTAATGGAGATAACACGCCGTCGTGCAGCAGCACTCCGATATGGCGTCCAAACGCCATCGAGACGCCGGCGGTGGAGCCATCGCCGGAAGGAACGAAGAAACTGCTAATTGAGCTGTTTCGCGAGAGCTTCGATAGCGAGCATGGAAGAACAATTGGGACTGCAACGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAATAATAGCAAGCCAAATTGTAGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTTCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCAGTGCACCCTTGA

Coding sequence (CDS)

ATGGGGAATTGTGTTCTTATTCGTCGAGACCAAAAATCTGACCCTAAATTCAAGTGGTCGGTCGGTTCCGGTGCGCTCGTCAATGTCCGTGTGCCGATGCCGACTGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCACCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGGTAAGGGCGATGAGATGTTCTTCGATTCTCAGGCTTGGTTGGATTCTGATAACGATGATTTCTTCAGCGTTAATGGAGATAACACGCCGTCGTGCAGCAGCACTCCGATATGGCGTCCAAACGCCATCGAGACGCCGGCGGTGGAGCCATCGCCGGAAGGAACGAAGAAACTGCTAATTGAGCTGTTTCGCGAGAGCTTCGATAGCGAGCATGGAAGAACAATTGGGACTGCAACGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAATAATAGCAAGCCAAATTGTAGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTTCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCAGTGCACCCTTGA

Protein sequence

MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQANGRLCSSPPSSHLPSSPEFGKGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPNAIETPAVEPSPEGTKKLLIELFRESFDSEHGRTIGTATSNGHIGVVIMEGNNNNNNNSKPNCSGRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRGGGPVHP

Homology

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BLAST of CmaCh04G018260 vs. Swiss-Prot
Match: Y3721_ARATH (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.9e-07
Identity = 59/203 (29.06%), Postives = 85/203 (41.87%), Query Frame = 1


Query: 7   IRRDQKSDPKFKWSVGSGALVNVRVPMPT--ELDQANGRLCSSPPSSHLP---------- 66
           IR D    P+ + +V      NV +  P+  +  ++  +  S P +++L           
Sbjct: 14  IRADSMVTPESQMTVNDNKNDNVSILSPSVKKSFESPRKSTSIPANNNLTPVKSRWSFSS 73

Query: 67  SSPEFGKGDEMFFDSQAWLDSD-NDDFFSVNGDNTPSCSSTP--------------IWRP 126
           S   FG  DE FFDSQ WL SD +DDF SVNGD TPS  +TP              I+  
Sbjct: 74  SKKSFGSKDETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTPKSSFSDRPPRFHNLIFHE 133

Query: 127 NAIETPAVEPSPEGTKKLLIELFRESFDSEHGRTIGTATSNGHIGVVIMEGNNNNNNNSK 183
                 +  P+P   +K L ELFR+S   E       + S+  I    + G N+   N  
Sbjct: 134 KKPSRGSSSPAPLPRRKKLGELFRDSIREEREE----SGSSSAISTPYLSGANSREFND- 193

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BLAST of CmaCh04G018260 vs. TrEMBL
Match: A0A0A0KTD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589990 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.7e-70
Identity = 152/225 (67.56%), Postives = 167/225 (74.22%), Query Frame = 1


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQAN--------GRLCSSPP--S 60
           MGNCVL+RRDQKSD KFKWSVG   +VNV V      ++ +        GRLCSSPP  S
Sbjct: 1   MGNCVLVRRDQKSDSKFKWSVGPRTIVNVNVSSTEPGNKPDVWVEKEIIGRLCSSPPPLS 60

Query: 61  SHL-PSSPEFGKGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPNAIETPAVEP 120
           SHL PSSP FGKGDE+FFDSQAWLDSDNDD+FSVNGDNTPSC STPIWRPN IE P  +P
Sbjct: 61  SHLPPSSPPFGKGDEIFFDSQAWLDSDNDDYFSVNGDNTPSCGSTPIWRPNTIEAPPTDP 120

Query: 121 -SPEGTKKLLIELFRESFDSEHGRTI-GTATSNGH--IGVVIMEGNNNNNNNSKPNCSGR 180
            SP+ TKKLL ELF+ESF+ +HGR+I  T  SN H  I VVIME      NN KP     
Sbjct: 121 SSPKQTKKLLFELFQESFNRDHGRSITSTTISNRHNNIEVVIME-----TNNKKP----I 180

Query: 181 SRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRGGGPVH 211
           S+SVKG SAQS  WCIPVPKLARSLSL +KKKRLLSPCRGGG VH
Sbjct: 181 SKSVKGNSAQSKPWCIPVPKLARSLSLGEKKKRLLSPCRGGGQVH 216

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BLAST of CmaCh04G018260 vs. TrEMBL
Match: D7TAS9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03060 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.7e-18
Identity = 76/220 (34.55%), Postives = 113/220 (51.36%), Query Frame = 1


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQANGRLCSSPPSSHLPSSPEFG 60
           MG+CV + +  +S  K +WS  S    +V    P + +  + +      +   PS  E G
Sbjct: 1   MGSCVSVHKSSESTMKLQWSTASKTTDSVLNESPVKENTVSTQQFKPQLT---PSFRELG 60

Query: 61  KGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPNAIETP--------------A 120
             +E+FFDSQ WL+SD +DFFS+NGD+TP   +TP+ + +  ETP               
Sbjct: 61  SKEEVFFDSQPWLESDCEDFFSINGDSTPHHGNTPMNQSSFRETPRLDRSHHMDKSPNSL 120

Query: 121 VEPSPEGTKKLLIELFRESF------DSEHGRTIGTATSNGHI--GVVIMEGNNNNNNNS 180
           +EPSP   KK LIELFRESF       ++  + I +  +NG +     I +   N   +S
Sbjct: 121 IEPSPSDKKK-LIELFRESFGDDPFVGNQDLQGIESNMANGRLKAKATIFDFLTNRGCSS 180

Query: 181 KPNCSGRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKR 199
           + + +   +  K KSA S   C+  P L RSLS SD+K+R
Sbjct: 181 ERSPNKGYKPEKEKSAHSAQCCL--PGLVRSLSFSDRKRR 214

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BLAST of CmaCh04G018260 vs. TrEMBL
Match: B9RMH1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080830 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-17
Identity = 78/239 (32.64%), Postives = 108/239 (45.19%), Query Frame = 1


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTE---------LDQANGRLCSSPPSS 60
           MGNCV  ++ ++     K S+      N+++  P +         + + N +L SS PS 
Sbjct: 1   MGNCVPAQKSREPAMNLKSSINPQEN-NIQIESPIKDNKVNSDLSMSERNSKLQSSAPSP 60

Query: 61  HLPSSPEFGKGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPNAIETPAV---- 120
           +  S       +EMFFDSQ W+DSD +DF SVNGD TP   ++P+ + + I  P      
Sbjct: 61  YGTSFRGLSNREEMFFDSQPWIDSDIEDFLSVNGDFTPLSGASPLHQSSFIRNPQCDESI 120

Query: 121 ----------EPSPEGTKKLLIELFRESF--DSEHGRTIGTATSNGHIGVVIMEGNNNNN 180
                     E SP   KK LIE FRESF  D +  + +   T    +   +     N+N
Sbjct: 121 YISSNVNSLPESSPTDMKKQLIEFFRESFSSDVDDNQNLQDKTEAKSMAFYLPSKCRNSN 180

Query: 181 NNSKPNCS---------GRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRG 206
                N S         G     KGK A+S A C   P   RSLS S++KKRL S   G
Sbjct: 181 TYESVNSSICSSEATPNGYFNRAKGKPAESEAQCC-FPNFVRSLSFSERKKRLNSAYNG 237

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BLAST of CmaCh04G018260 vs. TrEMBL
Match: A0A059D9L1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03472 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.1e-16
Identity = 82/227 (36.12%), Postives = 121/227 (53.30%), Query Frame = 1


Query: 1   MGNCVLIRRDQKSDP-KFKWSVGS--GALVNVRVPMPTELD---QANGRLCSSPPSSHLP 60
           MGNCV + R+Q S   K   SV S  G  V V+      L+   +A  +  ++PP++   
Sbjct: 1   MGNCVTVPRNQNSAAVKLDLSVASETGGGVPVQEASADALNSVAEAGPKPQAAPPAT--- 60

Query: 61  SSPEFGKGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPN---------AIETP 120
           S  E G  +EMFF+SQAW +SD +D+FSV  D TPSC S+PI   +         +++T 
Sbjct: 61  SFRELGTKEEMFFESQAWWESDCEDYFSVCDDATPSCGSSPIHPRSSFGNVPVNKSLQTD 120

Query: 121 ----AVEPSPEGTKKLLIELFRESFDSE-HGRTIGTATSNGHIGVVIMEGNNNNNNNSKP 180
               +V+P P   KKLL ELF+ESF+++     +   T +       +  N+  + +  P
Sbjct: 121 GALNSVQPLPTEPKKLLFELFQESFNADAKSGVMAFPTESPVKSPFSLRRNSAYSVDGTP 180

Query: 181 NCSGRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRGGG 208
           N S  S++ K KS  S+  C+  P L R+LS  + KKR +SP  GGG
Sbjct: 181 NRS--SKTAKVKSGSSSQRCL--PDLVRNLSFREMKKR-MSPSHGGG 219

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BLAST of CmaCh04G018260 vs. TrEMBL
Match: A5AHM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011296 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 80/239 (33.47%), Postives = 117/239 (48.95%), Query Frame = 1


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQANGR-----LCSSPPS----- 60
           MG+CV + +  +S  K +WS  S    +V    P + +  N +     L  S P      
Sbjct: 1   MGSCVSVHKSSESTMKLQWSTASKTTDSVLNESPVKENTVNTQQFKPQLTPSFPGIGYDI 60

Query: 61  ----SHLPSSPEFG-----KGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPNA 120
               ++L S   FG       +E+FFDSQ WL+SD +DFFS+NGD+TP   +TP+ + + 
Sbjct: 61  LFWIAYLHSWFSFGFDYPGSKEEVFFDSQPWLESDCEDFFSINGDSTPHHGNTPMNQSSF 120

Query: 121 IETP--------------AVEPSPEGTKKLLIELFRESF------DSEHGRTIGTATSNG 180
            ETP               +EPSP   KK LIELFRESF       ++  + I +  +NG
Sbjct: 121 RETPRLDRSHHMDKSPNSLIEPSPSDKKK-LIELFRESFGDDPFVGNQDLQGIESNMANG 180

Query: 181 HI--GVVIMEGNNNNNNNSKPNCSGRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKR 199
            +     I +   N   +S+ + +   +  K KSA S   C+  P L RSLS SD+K+R
Sbjct: 181 RLKXKATIFDFLTNRGCSSERSPNKGYKPEKEKSAHSAQCCL--PGLVRSLSFSDRKRR 236

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BLAST of CmaCh04G018260 vs. TAIR10
Match: AT3G01860.1 (AT3G01860.1 unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 53/184 (28.80%), Postives = 85/184 (46.20%), Query Frame = 1


Query: 32  PMPTELDQANGRLCSSPP--SSHLPSSPEFGKGDEMFFDSQAWLDSD-NDDFFSVNGDNT 91
           P+ T++   +  +  +PP  S    S     K D +FFDS+ WLDSD +DDF SV G+ T
Sbjct: 34  PLKTDVMITSSTINGNPPIDSGRWDSG---NKEDMIFFDSRGWLDSDCDDDFMSVGGEFT 93

Query: 92  PSCSSTPIWRPNAIETP-----------AVEPSPEGTKKLLIELFRESFDSEHGRTIGTA 151
           PS  +TP+      +TP             E SP   KK L+ELF+E+ D E        
Sbjct: 94  PSRGTTPVHHKFCDQTPHQGEENKHGEEEEEASPTDNKKRLLELFKETQDEEDEEEEDYV 153

Query: 152 TSNGHIGVVIMEGNNNNNNNSKPNCSGRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKK 202
                   + +     ++  + P  + + R  K K  +S A    VP+L    S +D+++
Sbjct: 154 AEGKARACLWIRTPVRSSAPATPYNNNKERQQKFKRVRSAALGRCVPRLVSCSSFTDRRR 213

[Close]

BLAST of CmaCh04G018260 vs. TAIR10
Match: AT3G27210.1 (AT3G27210.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-08
Identity = 59/203 (29.06%), Postives = 85/203 (41.87%), Query Frame = 1


Query: 7   IRRDQKSDPKFKWSVGSGALVNVRVPMPT--ELDQANGRLCSSPPSSHLP---------- 66
           IR D    P+ + +V      NV +  P+  +  ++  +  S P +++L           
Sbjct: 14  IRADSMVTPESQMTVNDNKNDNVSILSPSVKKSFESPRKSTSIPANNNLTPVKSRWSFSS 73

Query: 67  SSPEFGKGDEMFFDSQAWLDSD-NDDFFSVNGDNTPSCSSTP--------------IWRP 126
           S   FG  DE FFDSQ WL SD +DDF SVNGD TPS  +TP              I+  
Sbjct: 74  SKKSFGSKDETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTPKSSFSDRPPRFHNLIFHE 133

Query: 127 NAIETPAVEPSPEGTKKLLIELFRESFDSEHGRTIGTATSNGHIGVVIMEGNNNNNNNSK 183
                 +  P+P   +K L ELFR+S   E       + S+  I    + G N+   N  
Sbjct: 134 KKPSRGSSSPAPLPRRKKLGELFRDSIREEREE----SGSSSAISTPYLSGANSREFND- 193

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BLAST of CmaCh04G018260 vs. NCBI nr
Match: gi|449435053|ref|XP_004135310.1| (PREDICTED: uncharacterized protein At3g27210-like [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 2.4e-70
Identity = 152/225 (67.56%), Postives = 167/225 (74.22%), Query Frame = 1


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQAN--------GRLCSSPP--S 60
           MGNCVL+RRDQKSD KFKWSVG   +VNV V      ++ +        GRLCSSPP  S
Sbjct: 1   MGNCVLVRRDQKSDSKFKWSVGPRTIVNVNVSSTEPGNKPDVWVEKEIIGRLCSSPPPLS 60

Query: 61  SHL-PSSPEFGKGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPNAIETPAVEP 120
           SHL PSSP FGKGDE+FFDSQAWLDSDNDD+FSVNGDNTPSC STPIWRPN IE P  +P
Sbjct: 61  SHLPPSSPPFGKGDEIFFDSQAWLDSDNDDYFSVNGDNTPSCGSTPIWRPNTIEAPPTDP 120

Query: 121 -SPEGTKKLLIELFRESFDSEHGRTI-GTATSNGH--IGVVIMEGNNNNNNNSKPNCSGR 180
            SP+ TKKLL ELF+ESF+ +HGR+I  T  SN H  I VVIME      NN KP     
Sbjct: 121 SSPKQTKKLLFELFQESFNRDHGRSITSTTISNRHNNIEVVIME-----TNNKKP----I 180

Query: 181 SRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRGGGPVH 211
           S+SVKG SAQS  WCIPVPKLARSLSL +KKKRLLSPCRGGG VH
Sbjct: 181 SKSVKGNSAQSKPWCIPVPKLARSLSLGEKKKRLLSPCRGGGQVH 216

[Close]

BLAST of CmaCh04G018260 vs. NCBI nr
Match: gi|659090502|ref|XP_008446050.1| (PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 5.9e-69
Identity = 149/222 (67.12%), Postives = 164/222 (73.87%), Query Frame = 1


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQAN-------GRLCSSPP-SSH 60
           MGNCVL+RRDQK D KFKWSVGSG +VNV V      ++         GRLCSSP  SSH
Sbjct: 1   MGNCVLVRRDQKPDSKFKWSVGSGTVVNVNVSSNESDNKPEVWEKEIIGRLCSSPRLSSH 60

Query: 61  L-PSSPEFGKGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPNAIETPAVEP-S 120
           L PSSP FGKGDE+FFDSQAWLDSDNDDFFSVNGDNTPSC +TP+WRPN IE P  +P S
Sbjct: 61  LQPSSPPFGKGDEIFFDSQAWLDSDNDDFFSVNGDNTPSCGNTPLWRPNTIEAPLADPSS 120

Query: 121 PEGTKKLLIELFRESFDSEHGRTIGTAT-SNGH-IGVVIMEGNNNNNNNSKPNCSGRSRS 180
           P+  KKLL ELF+ESF+ EHGR+I   T SN H I VVIME      N+ KP     S+S
Sbjct: 121 PKQRKKLLFELFQESFNREHGRSIANPTISNRHNIEVVIMEA-----NDKKP----ISKS 180

Query: 181 VKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRGGGPVH 211
           VKG S QST WCIPVPKL RSLSL +KKKRLLSPCRGGG VH
Sbjct: 181 VKGNSTQSTPWCIPVPKLTRSLSLGEKKKRLLSPCRGGGHVH 213

[Close]

BLAST of CmaCh04G018260 vs. NCBI nr
Match: gi|719983449|ref|XP_010250765.1| (PREDICTED: uncharacterized protein At3g27210-like [Nelumbo nucifera])

HSP 1 Score: 102.4 bits (254), Expect = 9.6e-19
Identity = 90/254 (35.43%), Postives = 122/254 (48.03%), Query Frame = 1


Query: 1   MGNCVLIRRDQKSDPKFKWSVGS--GALVNVRVPMPTELDQANG-----------RLCSS 60
           MG+CV + ++  S  KF+ S+GS  G +V   +P   E +  NG           +L S 
Sbjct: 1   MGSCVSVHKNPDSALKFRLSIGSKTGKMV---IPSAIEENPVNGEHPTTELGFKSQLSSQ 60

Query: 61  PPSSHLPSSPEFGKGDEMFFDSQAWLDSD-NDDFFSVNGDNTPSCSSTPIWRPNAIETPA 120
           PP+  + +  +FG  +E FFDSQ WL+SD  DDFFSVNGD TPS  STPI + + I TP 
Sbjct: 61  PPT--VTTFRDFGSKEETFFDSQPWLESDCEDDFFSVNGDFTPSRGSTPIHQSSFIGTPR 120

Query: 121 V--------------EPSPEGTKKLLIELFRESFDSEHGRTIGTATSNGHIGVVIMEGNN 180
           +              EPSP   KK L ELFRESFD+           N  +     E N+
Sbjct: 121 LNKFLFVDGAVDSKPEPSPTDKKKKLAELFRESFDNNDVLNNQNIAGNQIMANGKPEPNS 180

Query: 181 NN------NNNSKPNCSGRSR-------------SVKGKSAQSTAWCIPVPKLARSLSLS 208
            N      + N  P   G +                K K +++   C+  P L ++LS +
Sbjct: 181 TNLVLPPKSTNGTPYMCGANSVCSSERTPNRDPKHEKEKLSRAAQCCL--PSLVQNLSFN 240

[Close]

BLAST of CmaCh04G018260 vs. NCBI nr
Match: gi|225425784|ref|XP_002263139.1| (PREDICTED: uncharacterized protein At3g27210 isoform X1 [Vitis vinifera])

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 76/220 (34.55%), Postives = 113/220 (51.36%), Query Frame = 1


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQANGRLCSSPPSSHLPSSPEFG 60
           MG+CV + +  +S  K +WS  S    +V    P + +  + +      +   PS  E G
Sbjct: 1   MGSCVSVHKSSESTMKLQWSTASKTTDSVLNESPVKENTVSTQQFKPQLT---PSFRELG 60

Query: 61  KGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPNAIETP--------------A 120
             +E+FFDSQ WL+SD +DFFS+NGD+TP   +TP+ + +  ETP               
Sbjct: 61  SKEEVFFDSQPWLESDCEDFFSINGDSTPHHGNTPMNQSSFRETPRLDRSHHMDKSPNSL 120

Query: 121 VEPSPEGTKKLLIELFRESF------DSEHGRTIGTATSNGHI--GVVIMEGNNNNNNNS 180
           +EPSP   KK LIELFRESF       ++  + I +  +NG +     I +   N   +S
Sbjct: 121 IEPSPSDKKK-LIELFRESFGDDPFVGNQDLQGIESNMANGRLKAKATIFDFLTNRGCSS 180

Query: 181 KPNCSGRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKR 199
           + + +   +  K KSA S   C+  P L RSLS SD+K+R
Sbjct: 181 ERSPNKGYKPEKEKSAHSAQCCL--PGLVRSLSFSDRKRR 214

[Close]

BLAST of CmaCh04G018260 vs. NCBI nr
Match: gi|255547766|ref|XP_002514940.1| (PREDICTED: uncharacterized protein At3g27210 [Ricinus communis])

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 78/239 (32.64%), Postives = 108/239 (45.19%), Query Frame = 1


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTE---------LDQANGRLCSSPPSS 60
           MGNCV  ++ ++     K S+      N+++  P +         + + N +L SS PS 
Sbjct: 1   MGNCVPAQKSREPAMNLKSSINPQEN-NIQIESPIKDNKVNSDLSMSERNSKLQSSAPSP 60

Query: 61  HLPSSPEFGKGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPNAIETPAV---- 120
           +  S       +EMFFDSQ W+DSD +DF SVNGD TP   ++P+ + + I  P      
Sbjct: 61  YGTSFRGLSNREEMFFDSQPWIDSDIEDFLSVNGDFTPLSGASPLHQSSFIRNPQCDESI 120

Query: 121 ----------EPSPEGTKKLLIELFRESF--DSEHGRTIGTATSNGHIGVVIMEGNNNNN 180
                     E SP   KK LIE FRESF  D +  + +   T    +   +     N+N
Sbjct: 121 YISSNVNSLPESSPTDMKKQLIEFFRESFSSDVDDNQNLQDKTEAKSMAFYLPSKCRNSN 180

Query: 181 NNSKPNCS---------GRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRG 206
                N S         G     KGK A+S A C   P   RSLS S++KKRL S   G
Sbjct: 181 TYESVNSSICSSEATPNGYFNRAKGKPAESEAQCC-FPNFVRSLSFSERKKRLNSAYNG 237

The following BLAST results are available for this feature:

BLAST of CmaCh04G018260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3721_ARATH	4.9e-07	29.06	Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1	[more]

BLAST of CmaCh04G018260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTD3_CUCSA	1.7e-70	67.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589990 PE=4 SV=1	[more]
D7TAS9_VITVI	9.7e-18	34.55	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03060 PE=4 SV=...	[more]
B9RMH1_RICCO	3.7e-17	32.64	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080830 PE=4 SV=1	[more]
A0A059D9L1_EUCGR	4.1e-16	36.12	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03472 PE=4 SV=1	[more]
A5AHM5_VITVI	1.5e-15	33.47	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011296 PE=4 SV=1	[more]

BLAST of CmaCh04G018260 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01860.1	1.1e-09	28.80	unknown protein	[more]
AT3G27210.1	2.8e-08	29.06	unknown protein	[more]

BLAST of CmaCh04G018260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435053\|ref\|XP_004135310.1\|	2.4e-70	67.56	PREDICTED: uncharacterized protein At3g27210-like [Cucumis sativus]	[more]
gi\|659090502\|ref\|XP_008446050.1\|	5.9e-69	67.12	PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo]	[more]
gi\|719983449\|ref\|XP_010250765.1\|	9.6e-19	35.43	PREDICTED: uncharacterized protein At3g27210-like [Nelumbo nucifera]	[more]
gi\|225425784\|ref\|XP_002263139.1\|	1.4e-17	34.55	PREDICTED: uncharacterized protein At3g27210 isoform X1 [Vitis vinifera]	[more]
gi\|255547766\|ref\|XP_002514940.1\|	5.3e-17	32.64	PREDICTED: uncharacterized protein At3g27210 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G018260.1	CmaCh04G018260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34280	FAMILY NOT NAMED	coord: 2..208 score: 1.5
None	No IPR available	PANTHER	PTHR34280:SF2	SUBFAMILY NOT NAMED	coord: 2..208 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G018260	Cucsa.075590	Cucumber (Gy14) v1	cgycmaB0126
CmaCh04G018260	Csa5G589990	Cucumber (Chinese Long) v2	cmacuB749
CmaCh04G018260	MELO3C011878	Melon (DHL92) v3.5.1	cmameB641
CmaCh04G018260	ClCG11G013790	Watermelon (Charleston Gray)	cmawcgB629
CmaCh04G018260	CSPI05G21530	Wild cucumber (PI 183967)	cmacpiB758
CmaCh04G018260	CmoCh04G019230	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G018260	Cp4.1LG01g16020	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G018260	MELO3C011878.2	Melon (DHL92) v3.6.1	cmamedB727
CmaCh04G018260	CsaV3_5G030380	Cucumber (Chinese Long) v3	cmacucB0886
CmaCh04G018260	Cla97C11G219740	Watermelon (97103) v2	cmawmbB735
CmaCh04G018260	Bhi07G001518	Wax gourd	cmawgoB0891
CmaCh04G018260	CsGy5G021050	Cucumber (Gy14) v2	cgybcmaB675
CmaCh04G018260	Carg14266	Silver-seed gourd	carcmaB0339

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G018260	Melon (DHL92) v3.6.1	cmamedB764
CmaCh04G018260	Silver-seed gourd	carcmaB0884
CmaCh04G018260	Silver-seed gourd	carcmaB0971
CmaCh04G018260	Cucumber (Chinese Long) v3	cmacucB0823
CmaCh04G018260	Watermelon (97103) v2	cmawmbB789
CmaCh04G018260	Wax gourd	cmawgoB0872
CmaCh04G018260	Cucurbita maxima (Rimu)	cmacmaB189
CmaCh04G018260	Cucurbita maxima (Rimu)	cmacmaB404
CmaCh04G018260	Cucumber (Gy14) v1	cgycmaB1093
CmaCh04G018260	Cucurbita moschata (Rifu)	cmacmoB680
CmaCh04G018260	Cucurbita moschata (Rifu)	cmacmoB711
CmaCh04G018260	Wild cucumber (PI 183967)	cmacpiB700
CmaCh04G018260	Cucumber (Chinese Long) v2	cmacuB692
CmaCh04G018260	Melon (DHL92) v3.5.1	cmameB681
CmaCh04G018260	Watermelon (Charleston Gray)	cmawcgB681
CmaCh04G018260	Watermelon (97103) v1	cmawmB670
CmaCh04G018260	Watermelon (97103) v1	cmawmB738
CmaCh04G018260	Cucurbita pepo (Zucchini)	cmacpeB694
CmaCh04G018260	Cucurbita pepo (Zucchini)	cmacpeB756
CmaCh04G018260	Bottle gourd (USVL1VR-Ls)	cmalsiB670
CmaCh04G018260	Bottle gourd (USVL1VR-Ls)	cmalsiB704
CmaCh04G018260	Cucumber (Gy14) v2	cgybcmaB244