CmoCh04G019230 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G019230
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 9824461 .. 9825330 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATTGTGTTCTTATTCGTAGAGACCAAAAATCTGACCCTAAATTCAAGTGGTCGGTCGGTTCCGGTGCGCTCGTCAATGTCCGTGTGCCGATCCCGACCGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCGCCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGGTTCGATTCCAACCCCCTCTTTGATTTTGTTCTTGATTTTAAGTGATTAATGCAATTTTGTTCTTTATTTGTAGTGATTTTGACATATGGATTAAAATTAATGCAGGTAAGGGTGATGAGATGTTCTTCGATTCTCAGGCTTGGTTGGATTCTGATAACGATGATTTCTTCAGCGTTAACGGAGGTTAGAATTTTAAAAACTTTGATTAGTTCAATTCATGTTAATAATCACCAACTTCCACAATGATATGATATTGTCATTTTGAGCCGAAGCCTCAACAATTCAGATCTTGGCTTGTTGTTTACGAGCAGATAACATGCCGTCGTGTGGCAGCACTCCGATATGGCGTCCGAACGCCGTCGAGACGCCGGCGGTGGAGCCATCGCCGGAAGGAACGAAGAAGCTGCTAATTGAGCTGTTTCGCGAGAGCTTTGATAGCGAGCATGGAAGCACAATTGGGACTGCAATGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAATAATAGCAAGCCAAATTGTGGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTCCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCGGTGCACCCTTGA

mRNA sequence

ATGGGGAATTGTGTTCTTATTCGTAGAGACCAAAAATCTGACCCTAAATTCAAGTGGTCGGTCGGTTCCGGTGCGCTCGTCAATGTCCGTGTGCCGATCCCGACCGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCGCCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGGTTCGATTCCAACCCCCTCTTTGATTTTCACTCCGATATGGCGTCCGAACGCCGTCGAGACGCCGGCGGTGGAGCCATCGCCGGAAGGAACGAAGAAGCTGCTAATTGAGCTGTTTCGCGAGAGCTTTGATAGCGAGCATGGAAGCACAATTGGGACTGCAATGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAATAATAGCAAGCCAAATTGTGGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTCCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCGGTGCACCCTTGA

Coding sequence (CDS)

ATGGGGAATTGTGTTCTTATTCGTAGAGACCAAAAATCTGACCCTAAATTCAAGTGGTCGGTCGGTTCCGGTGCGCTCGTCAATGTCCGTGTGCCGATCCCGACCGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCGCCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGGTTCGATTCCAACCCCCTCTTTGATTTTCACTCCGATATGGCGTCCGAACGCCGTCGAGACGCCGGCGGTGGAGCCATCGCCGGAAGGAACGAAGAAGCTGCTAATTGAGCTGTTTCGCGAGAGCTTTGATAGCGAGCATGGAAGCACAATTGGGACTGCAATGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAATAATAGCAAGCCAAATTGTGGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTCCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCGGTGCACCCTTGA
BLAST of CmoCh04G019230 vs. TrEMBL
Match: A0A0A0KTD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589990 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.8e-47
Identity = 123/225 (54.67%), Postives = 138/225 (61.33%), Query Frame = 1

Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPIPTELDQAN--------GRLCSSPP--S 60
           MGNCVL+RRDQKSD KFKWSVG   +VNV V      ++ +        GRLCSSPP  S
Sbjct: 1   MGNCVLVRRDQKSDSKFKWSVGPRTIVNVNVSSTEPGNKPDVWVEKEIIGRLCSSPPPLS 60

Query: 61  SHLP-SSPEFGSIP------------------------TPSLIFTPIWRPNAVETPAVEP 120
           SHLP SSP FG                           TPS   TPIWRPN +E P  +P
Sbjct: 61  SHLPPSSPPFGKGDEIFFDSQAWLDSDNDDYFSVNGDNTPSCGSTPIWRPNTIEAPPTDP 120

Query: 121 S-PEGTKKLLIELFRESFDSEHGSTI-GTAMSNGH--IGVVIMEGNNNNNNNSKPNCGGR 180
           S P+ TKKLL ELF+ESF+ +HG +I  T +SN H  I VVIME      NN KP     
Sbjct: 121 SSPKQTKKLLFELFQESFNRDHGRSITSTTISNRHNNIEVVIME-----TNNKKP----I 180

Query: 181 SRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRGGGPVH 187
           S+SVKG SAQS  WCIPVPKLARSLSL +KKKRLLSPCRGGG VH
Sbjct: 181 SKSVKGNSAQSKPWCIPVPKLARSLSLGEKKKRLLSPCRGGGQVH 216

BLAST of CmoCh04G019230 vs. NCBI nr
Match: gi|449435053|ref|XP_004135310.1| (PREDICTED: uncharacterized protein At3g27210-like [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 123/225 (54.67%), Postives = 138/225 (61.33%), Query Frame = 1

Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPIPTELDQAN--------GRLCSSPP--S 60
           MGNCVL+RRDQKSD KFKWSVG   +VNV V      ++ +        GRLCSSPP  S
Sbjct: 1   MGNCVLVRRDQKSDSKFKWSVGPRTIVNVNVSSTEPGNKPDVWVEKEIIGRLCSSPPPLS 60

Query: 61  SHLP-SSPEFGSIP------------------------TPSLIFTPIWRPNAVETPAVEP 120
           SHLP SSP FG                           TPS   TPIWRPN +E P  +P
Sbjct: 61  SHLPPSSPPFGKGDEIFFDSQAWLDSDNDDYFSVNGDNTPSCGSTPIWRPNTIEAPPTDP 120

Query: 121 S-PEGTKKLLIELFRESFDSEHGSTI-GTAMSNGH--IGVVIMEGNNNNNNNSKPNCGGR 180
           S P+ TKKLL ELF+ESF+ +HG +I  T +SN H  I VVIME      NN KP     
Sbjct: 121 SSPKQTKKLLFELFQESFNRDHGRSITSTTISNRHNNIEVVIME-----TNNKKP----I 180

Query: 181 SRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRGGGPVH 187
           S+SVKG SAQS  WCIPVPKLARSLSL +KKKRLLSPCRGGG VH
Sbjct: 181 SKSVKGNSAQSKPWCIPVPKLARSLSLGEKKKRLLSPCRGGGQVH 216

BLAST of CmoCh04G019230 vs. NCBI nr
Match: gi|659090502|ref|XP_008446050.1| (PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 1.5e-44
Identity = 121/223 (54.26%), Postives = 135/223 (60.54%), Query Frame = 1

Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPIPTELD--------QANGRLCSSPP-SS 60
           MGNCVL+RRDQK D KFKWSVGSG +VNV V    E D        +  GRLCSSP  SS
Sbjct: 1   MGNCVLVRRDQKPDSKFKWSVGSGTVVNVNVS-SNESDNKPEVWEKEIIGRLCSSPRLSS 60

Query: 61  HL-PSSPEFGSIP------------------------TPSLIFTPIWRPNAVETPAVEP- 120
           HL PSSP FG                           TPS   TP+WRPN +E P  +P 
Sbjct: 61  HLQPSSPPFGKGDEIFFDSQAWLDSDNDDFFSVNGDNTPSCGNTPLWRPNTIEAPLADPS 120

Query: 121 SPEGTKKLLIELFRESFDSEHGSTIGT-AMSNGH-IGVVIMEGNNNNNNNSKPNCGGRSR 180
           SP+  KKLL ELF+ESF+ EHG +I    +SN H I VVIME      N+ KP     S+
Sbjct: 121 SPKQRKKLLFELFQESFNREHGRSIANPTISNRHNIEVVIMEA-----NDKKP----ISK 180

Query: 181 SVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRGGGPVH 187
           SVKG S QST WCIPVPKL RSLSL +KKKRLLSPCRGGG VH
Sbjct: 181 SVKGNSTQSTPWCIPVPKLTRSLSLGEKKKRLLSPCRGGGHVH 213

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KTD3_CUCSA8.8e-4754.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589990 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449435053|ref|XP_004135310.1|1.3e-4654.67PREDICTED: uncharacterized protein At3g27210-like [Cucumis sativus][more]
gi|659090502|ref|XP_008446050.1|1.5e-4454.26PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G019230.1CmoCh04G019230.1mRNA


The following gene(s) are paralogous to this gene:

None