Carg14266 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14266
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_040 : 23257 .. 24234 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATCGACAGATCCTTTCCCTTTCTTGAACAAATTTTTGTGTTCCTCTTGCCATCGCCATGTTCGACGATCGGTAGGGGACAGTTTCTGGCGACCAAAAATGGGGAATTGTGTTCTTATTCGTAGAGACCAAAAATCTGACCCTAAATTCAAGTGGTCGGTCGGTTCCGGTGCGCTCGTCAATGTCCGTGTGCCGATGCCGACCGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCGCCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGGTTCGATTCCAACCCCCTCTTTGATTTTGTTCTTGATTTTAAGTGATTAATGCAATTTTGTTCTTGATTTGTAGTGATTTTGACATATGGATTAAAATTAATGCAGGTAAGGGCGATGAGATGTTCTTCGATTCTCAGGCTTGGTTGGATTCTGATAACGATGATTTCTTCAGCGTTAACGGAGGTTAGAATTTTAAAAACTTCGATTAGTTCGATTCATGTGAAATTCATGTTAATAATCACGAATTTCTACAATGGTATAATATTGTCATTTTGAGCGTAAGCCTCAACAATTCAGATCTTGGCTTGTTGTTTACAAGCAGATAACACGCCGTCGTGCAGCAGCACTCCGATATGGCGTCCGAACGCCGTCGAGACGCCGGCGGTGGAGCCATCGCCGGAAGGAACGAAGAAACTGCTAATTGAGCTGTTTCGCGAGAGCTTTGATAGCGAGCATGGAAGAACAATTGGGACTGCAATGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAATAGCAAGCCAAATTGTGGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTCCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCGGTGCACCCTTGA

mRNA sequence

CATATCGACAGATCCTTTCCCTTTCTTGAACAAATTTTTGTGTTCCTCTTGCCATCGCCATGTTCGACGATCGGTAGGGGACAGTTTCTGGCGACCAAAAATGGGGAATTGTGTTCTTATTCGTAGAGACCAAAAATCTGACCCTAAATTCAAGTGGTCGGTCGGTTCCGGTGCGCTCGTCAATGTCCGTGTGCCGATGCCGACCGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCGCCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGGAACGAAGAAACTGCTAATTGAGCTGTTTCGCGAGAGCTTTGATAGCGAGCATGGAAGAACAATTGGGACTGCAATGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAATAGCAAGCCAAATTGTGGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTCCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCGGTGCACCCTTGA

Coding sequence (CDS)

ATGGGGAATTGTGTTCTTATTCGTAGAGACCAAAAATCTGACCCTAAATTCAAGTGGTCGGTCGGTTCCGGTGCGCTCGTCAATGTCCGTGTGCCGATGCCGACCGAGCTCGACCAAGCCAACGGCAGGCTCTGTTCCAGTCCGCCGTCTTCTCATCTTCCCAGCTCGCCTGAATTCGGAACGAAGAAACTGCTAATTGAGCTGTTTCGCGAGAGCTTTGATAGCGAGCATGGAAGAACAATTGGGACTGCAATGAGTAATGGTCACATTGGGGTGGTGATTATGGAAGGTAATAATAATAATAATAATAGCAAGCCAAATTGTGGCGGGCGTTCAAGATCGGTGAAAGGGAAATCGGCGCAGTCCACGGCGTGGTGCATTCCGGTCCCGAAATTGGCGCGGAGTCTCAGCCTTAGCGACAAAAAGAAGAGGCTGCTCAGCCCTTGCCGCGGCGGTGGACCGGTGCACCCTTGA

Protein sequence

MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQANGRLCSSPPSSHLPSSPEFGTKKLLIELFRESFDSEHGRTIGTAMSNGHIGVVIMEGNNNNNNSKPNCGGRSRSVKGKSAQSTAWCIPVPKLARSLSLSDKKKRLLSPCRGGGPVHP

Homology

[Close]

BLAST of Carg14266 vs. NCBI nr
Match: XP_023541226.1 (uncharacterized protein At3g27210-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.9 bits (699), Expect = 3.5e-70
Identity = 147/210 (70.00%), Postives = 148/210 (70.48%), Query Frame = 0


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQANGRLCSSPPSSHLPSSPEF- 60
           MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVP+PTELDQANGRLCSSPPSSHLPSSPEF 
Sbjct: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPIPTELDQANGRLCSSPPSSHLPSSPEFG 60

Query: 61  ----------------------------------------------------GTKKLLIE 120
                                                               GTKKLLIE
Sbjct: 61  KGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPNAVETPAVEPSPEGTKKLLIE 120

Query: 121 LFRESFDSEHGRTIGTAMSNGHIGVVIMEXXXXXXXXXPNCGGRSRSVKGKSAQSTAWCI 158
           LFRESFDSEHGRTIGTA SNGHIGVVIME     X   PNCGGRSRSVKGKSAQSTAWCI
Sbjct: 121 LFRESFDSEHGRTIGTATSNGHIGVVIME-GNNNXNSKPNCGGRSRSVKGKSAQSTAWCI 180

[Close]

BLAST of Carg14266 vs. NCBI nr
Match: XP_022957118.1 (uncharacterized protein At3g27210-like [Cucurbita moschata])

HSP 1 Score: 268.9 bits (686), Expect = 1.1e-68
Identity = 153/211 (72.51%), Postives = 154/211 (72.99%), Query Frame = 0


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQANGRLCSSPPSSHLPSSPEF- 60
           MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVP+PTELDQANGRLCSSPPSSHLPSSPEF 
Sbjct: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPIPTELDQANGRLCSSPPSSHLPSSPEFG 60

Query: 61  ----------------------------------------------------GTKKLLIE 120
                                                               GTKKLLIE
Sbjct: 61  KGDEMFFDSQAWLDSDNDDFFSVNGDNMPSCGSTPIWRPNAVETPAVEPSPEGTKKLLIE 120

Query: 121 LFRESFDSEHGRTIGTAMSNGHIGVVI-MEXXXXXXXXXPNCGGRSRSVKGKSAQSTAWC 158
           LFRESFDSEHG TIGTAMSNGHIGVVI   XXXXXXXXXPNCGGRSRSVKGKSAQSTAWC
Sbjct: 121 LFRESFDSEHGSTIGTAMSNGHIGVVIXXXXXXXXXXXXPNCGGRSRSVKGKSAQSTAWC 180

[Close]

BLAST of Carg14266 vs. NCBI nr
Match: XP_022998641.1 (uncharacterized protein At3g27210-like [Cucurbita maxima])

HSP 1 Score: 263.1 bits (671), Expect = 6.1e-67
Identity = 151/211 (71.56%), Postives = 151/211 (71.56%), Query Frame = 0


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQANGRLCSSPPSSHLPSSPEF- 60
           MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQANGRLCSSPPSSHLPSSPEF 
Sbjct: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQANGRLCSSPPSSHLPSSPEFG 60

Query: 61  ----------------------------------------------------GTKKLLIE 120
                                                               GTKKLLIE
Sbjct: 61  KGDEMFFDSQAWLDSDNDDFFSVNGDNTPSCSSTPIWRPNAIETPAVEPSPEGTKKLLIE 120

Query: 121 LFRESFDSEHGRTIGTAMSNGHIGVV-IMEXXXXXXXXXPNCGGRSRSVKGKSAQSTAWC 158
           LFRESFDSEHGRTIGTA SNGHIGVV    XXXXXXXXX NC GRSRSVKGKSAQSTAWC
Sbjct: 121 LFRESFDSEHGRTIGTATSNGHIGVVXXXXXXXXXXXXXXNCSGRSRSVKGKSAQSTAWC 180

[Close]

BLAST of Carg14266 vs. NCBI nr
Match: XP_004135310.1 (PREDICTED: uncharacterized protein At3g27210-like [Cucumis sativus] >KGN51682.1 hypothetical protein Csa_5G589990 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 2.1e-35
Identity = 106/224 (47.32%), Postives = 118/224 (52.68%), Query Frame = 0


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQAN--------GRLCSSPP--S 60
           MGNCVL+RRDQKSD KFKWSVG   +VNV V      ++ +        GRLCSSPP  S
Sbjct: 1   MGNCVLVRRDQKSDSKFKWSVGPRTIVNVNVSSTEPGNKPDVWVEKEIIGRLCSSPPPLS 60

Query: 61  SHL-PSSPEFG------------------------------------------------- 120
           SHL PSSP FG                                                 
Sbjct: 61  SHLPPSSPPFGKGDEIFFDSQAWLDSDNDDYFSVNGDNTPSCGSTPIWRPNTIEAPPTDP 120

Query: 121 -----TKKLLIELFRESFDSEHGRTI-GTAMSNGH--IGVVIMEXXXXXXXXXPNCGGRS 157
                TKKLL ELF+ESF+ +HGR+I  T +SN H  I VVIME          N    S
Sbjct: 121 SSPKQTKKLLFELFQESFNRDHGRSITSTTISNRHNNIEVVIMETN--------NKKPIS 180

[Close]

BLAST of Carg14266 vs. NCBI nr
Match: XP_008446050.1 (PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 4.0e-34
Identity = 105/222 (47.30%), Postives = 114/222 (51.35%), Query Frame = 0


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELD--------QANGRLCSSPP-SS 60
           MGNCVL+RRDQK D KFKWSVGSG +VNV V    E D        +  GRLCSSP  SS
Sbjct: 1   MGNCVLVRRDQKPDSKFKWSVGSGTVVNVNV-SSNESDNKPEVWEKEIIGRLCSSPRLSS 60

Query: 61  HL-PSSPEFG-------------------------------------------------- 120
           HL PSSP FG                                                  
Sbjct: 61  HLQPSSPPFGKGDEIFFDSQAWLDSDNDDFFSVNGDNTPSCGNTPLWRPNTIEAPLADPS 120

Query: 121 ----TKKLLIELFRESFDSEHGRTIGT-AMSNGH-IGVVIMEXXXXXXXXXPNCGGRSRS 157
                KKLL ELF+ESF+ EHGR+I    +SN H I VVIME               S+S
Sbjct: 121 SPKQRKKLLFELFQESFNREHGRSIANPTISNRHNIEVVIMEANDKKPI--------SKS 180

[Close]

BLAST of Carg14266 vs. TrEMBL
Match: tr|A0A0A0KTD3|A0A0A0KTD3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589990 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 106/224 (47.32%), Postives = 118/224 (52.68%), Query Frame = 0


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELDQAN--------GRLCSSPP--S 60
           MGNCVL+RRDQKSD KFKWSVG   +VNV V      ++ +        GRLCSSPP  S
Sbjct: 1   MGNCVLVRRDQKSDSKFKWSVGPRTIVNVNVSSTEPGNKPDVWVEKEIIGRLCSSPPPLS 60

Query: 61  SHL-PSSPEFG------------------------------------------------- 120
           SHL PSSP FG                                                 
Sbjct: 61  SHLPPSSPPFGKGDEIFFDSQAWLDSDNDDYFSVNGDNTPSCGSTPIWRPNTIEAPPTDP 120

Query: 121 -----TKKLLIELFRESFDSEHGRTI-GTAMSNGH--IGVVIMEXXXXXXXXXPNCGGRS 157
                TKKLL ELF+ESF+ +HGR+I  T +SN H  I VVIME          N    S
Sbjct: 121 SSPKQTKKLLFELFQESFNRDHGRSITSTTISNRHNNIEVVIMETN--------NKKPIS 180

[Close]

BLAST of Carg14266 vs. TrEMBL
Match: tr|A0A1S3BEU1|A0A1S3BEU1_CUCME (uncharacterized protein At3g27210-like OS=Cucumis melo OX=3656 GN=LOC103488900 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-34
Identity = 105/222 (47.30%), Postives = 114/222 (51.35%), Query Frame = 0


Query: 1   MGNCVLIRRDQKSDPKFKWSVGSGALVNVRVPMPTELD--------QANGRLCSSPP-SS 60
           MGNCVL+RRDQK D KFKWSVGSG +VNV V    E D        +  GRLCSSP  SS
Sbjct: 1   MGNCVLVRRDQKPDSKFKWSVGSGTVVNVNV-SSNESDNKPEVWEKEIIGRLCSSPRLSS 60

Query: 61  HL-PSSPEFG-------------------------------------------------- 120
           HL PSSP FG                                                  
Sbjct: 61  HLQPSSPPFGKGDEIFFDSQAWLDSDNDDFFSVNGDNTPSCGNTPLWRPNTIEAPLADPS 120

Query: 121 ----TKKLLIELFRESFDSEHGRTIGT-AMSNGH-IGVVIMEXXXXXXXXXPNCGGRSRS 157
                KKLL ELF+ESF+ EHGR+I    +SN H I VVIME               S+S
Sbjct: 121 SPKQRKKLLFELFQESFNREHGRSIANPTISNRHNIEVVIMEANDKKPI--------SKS 180

The following BLAST results are available for this feature:

BLAST of Carg14266 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541226.1	3.5e-70	70.00	uncharacterized protein At3g27210-like [Cucurbita pepo subsp. pepo]	[more]
XP_022957118.1	1.1e-68	72.51	uncharacterized protein At3g27210-like [Cucurbita moschata]	[more]
XP_022998641.1	6.1e-67	71.56	uncharacterized protein At3g27210-like [Cucurbita maxima]	[more]
XP_004135310.1	2.1e-35	47.32	PREDICTED: uncharacterized protein At3g27210-like [Cucumis sativus] >KGN51682.1 ...	[more]
XP_008446050.1	4.0e-34	47.30	PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo]	[more]

BLAST of Carg14266 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg14266 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14266 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KTD3\|A0A0A0KTD3_CUCSA	1.4e-35	47.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589990 PE=4 SV=1	[more]
tr\|A0A1S3BEU1\|A0A1S3BEU1_CUCME	2.7e-34	47.30	uncharacterized protein At3g27210-like OS=Cucumis melo OX=3656 GN=LOC103488900 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14266-RA	Carg14266-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..120

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14266	Csa5G589990	Cucumber (Chinese Long) v2	carcuB0271
Carg14266	MELO3C011878	Melon (DHL92) v3.5.1	carmeB0246
Carg14266	ClCG11G013790	Watermelon (Charleston Gray)	carwcgB0233
Carg14266	CSPI05G21530	Wild cucumber (PI 183967)	carcpiB0275
Carg14266	Cucsa.075590	Cucumber (Gy14) v1	carcgyB0285
Carg14266	CmaCh04G018260	Cucurbita maxima (Rimu)	carcmaB0339
Carg14266	CmoCh04G019230	Cucurbita moschata (Rifu)	carcmoB0343
Carg14266	Cp4.1LG01g16020	Cucurbita pepo (Zucchini)	carcpeB0344
Carg14266	CsGy5G021050	Cucumber (Gy14) v2	carcgybB0258
Carg14266	MELO3C011878.2	Melon (DHL92) v3.6.1	carmedB0255
Carg14266	CsaV3_5G030380	Cucumber (Chinese Long) v3	carcucB0274
Carg14266	Cla97C11G219740	Watermelon (97103) v2	carwmbB0245
Carg14266	Bhi07G001518	Wax gourd	carwgoB0312

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14266	Silver-seed gourd	carcarB284
Carg14266	Silver-seed gourd	carcarB285
Carg14266	Cucurbita maxima (Rimu)	carcmaB0337
Carg14266	Cucurbita moschata (Rifu)	carcmoB0342
Carg14266	Cucurbita pepo (Zucchini)	carcpeB0341
Carg14266	Cucurbita pepo (Zucchini)	carcpeB0345
Carg14266	Bottle gourd (USVL1VR-Ls)	carlsiB218
Carg14266	Watermelon (97103) v1	carwmB0234