Cp4.1LG01g13810 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g13810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 8003625 .. 8003843 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGGCTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGGCGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA

mRNA sequence

ATGGTGAGGCTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGGCGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA

Coding sequence (CDS)

ATGGTGAGGCTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGGCGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA

Protein sequence

MVRLLRDFSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDTYGAACAAGCGAGCGG
BLAST of Cp4.1LG01g13810 vs. TrEMBL
Match: A0A0A0KUK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610410 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-15
Identity = 52/73 (71.23%), Postives = 57/73 (78.08%), Query Frame = 1

Query: 1  MVRLLRDFSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGG-GPKDKTSSHSDTY- 60
          MVR+LRDF G   GG   A  VLI WA V+SISII+TVIFSCTGG G KDK +SH+DTY 
Sbjct: 1  MVRVLRDFHG---GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYG 60

Query: 61 GAACAAGCGAGCG 72
          GAACAAGCG GCG
Sbjct: 61 GAACAAGCGGGCG 70

BLAST of Cp4.1LG01g13810 vs. TrEMBL
Match: A0A061ECN2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_009475 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-08
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1

Query: 1   MVRLLRDFSGEGGGGFIN--APAVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDT 60
           MVRL ++ +   GG      +  V   WAA+ ++S+I+ ++ SC GG  KDK S+ H+D 
Sbjct: 73  MVRLWKEVARTDGGVSSQDLSSMVFFFWAALAALSLITAIMLSCAGGASKDKASATHTDA 132

Query: 61  YGAACAAGCGAGCGG 73
           YG+ CAAGCGAGCGG
Sbjct: 133 YGSTCAAGCGAGCGG 147

BLAST of Cp4.1LG01g13810 vs. TrEMBL
Match: A0A0D2PVP6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157800 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-08
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 1

Query: 21 AVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDTYGAACAAGCGAGCG 72
          AVL+ WA + ++S+++ +IFSC GG  K+K S+ H+DTYG+ CAAGCGAGCG
Sbjct: 16 AVLMFWAVLAALSLVTAIIFSCAGGTSKEKASATHADTYGSTCAAGCGAGCG 67

BLAST of Cp4.1LG01g13810 vs. TrEMBL
Match: B9SJW1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0576720 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.0e-08
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1

Query: 1  MVR--LLRDFSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGGGPKDKTS-SHSDT 60
          MVR  + R+ +  GGGG      ++ILWAA++ +++I+  IFSC GG  KDK S +  DT
Sbjct: 1  MVRAWIRREETSGGGGG---EGLLVILWAALICLTLITATIFSCAGGSSKDKASATQGDT 60

Query: 61 YGAA-CAAGCGAGCGG 73
          YGA+ CAAGCGA CGG
Sbjct: 61 YGASTCAAGCGAACGG 73

BLAST of Cp4.1LG01g13810 vs. TrEMBL
Match: V4TMG7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017364mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.0e-08
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1

Query: 1  MVR-LLRDFSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGGG--PKDKTS-SHSD 60
          MVR  LR+ +  G  G  +A  VL++WAA+VS+S+IS ++FSC GGG   KDK S +H+D
Sbjct: 1  MVREYLREITTRGDEGGSSA-VVLLIWAALVSLSVISAIVFSCAGGGGASKDKDSTTHAD 60

Query: 61 TY-GAACAAGCGAGCGG 73
           Y G+ C AGCGA CGG
Sbjct: 61 GYGGSTCVAGCGAACGG 76

BLAST of Cp4.1LG01g13810 vs. TAIR10
Match: AT1G68238.1 (AT1G68238.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.8e-07
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1

Query: 18 NAPAVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDTYGAACAAGCGAGCGG 73
          N    L +WAAVV+ S+I+ VIFSC+    K  T  + D  G++CAAGCG GCGG
Sbjct: 13 NGEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHT--NDDVNGSSCAAGCGGGCGG 65

BLAST of Cp4.1LG01g13810 vs. NCBI nr
Match: gi|700196930|gb|KGN52107.1| (hypothetical protein Csa_5G610410 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-15
Identity = 52/73 (71.23%), Postives = 57/73 (78.08%), Query Frame = 1

Query: 1  MVRLLRDFSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGG-GPKDKTSSHSDTY- 60
          MVR+LRDF G   GG   A  VLI WA V+SISII+TVIFSCTGG G KDK +SH+DTY 
Sbjct: 1  MVRVLRDFHG---GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYG 60

Query: 61 GAACAAGCGAGCG 72
          GAACAAGCG GCG
Sbjct: 61 GAACAAGCGGGCG 70

BLAST of Cp4.1LG01g13810 vs. NCBI nr
Match: gi|590693054|ref|XP_007044227.1| (Uncharacterized protein TCM_009475 [Theobroma cacao])

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1

Query: 1   MVRLLRDFSGEGGGGFIN--APAVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDT 60
           MVRL ++ +   GG      +  V   WAA+ ++S+I+ ++ SC GG  KDK S+ H+D 
Sbjct: 73  MVRLWKEVARTDGGVSSQDLSSMVFFFWAALAALSLITAIMLSCAGGASKDKASATHTDA 132

Query: 61  YGAACAAGCGAGCGG 73
           YG+ CAAGCGAGCGG
Sbjct: 133 YGSTCAAGCGAGCGG 147

BLAST of Cp4.1LG01g13810 vs. NCBI nr
Match: gi|743920082|ref|XP_011004079.1| (PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica])

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1

Query: 1  MVRLLRD-FSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDT-Y 60
          MVR L++  + +GGGG ++   ++ LWA ++++ ++S ++FSC  G  KDKTS    T Y
Sbjct: 1  MVRPLKEVLAVDGGGGGLDGSCLVFLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 61 GAACAAGCGAGCGG 73
          G  CAAGCGA CGG
Sbjct: 61 GGGCAAGCGAACGG 74

BLAST of Cp4.1LG01g13810 vs. NCBI nr
Match: gi|763783111|gb|KJB50182.1| (hypothetical protein B456_008G157800 [Gossypium raimondii])

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-08
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 1

Query: 21 AVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDTYGAACAAGCGAGCG 72
          AVL+ WA + ++S+++ +IFSC GG  K+K S+ H+DTYG+ CAAGCGAGCG
Sbjct: 16 AVLMFWAVLAALSLVTAIIFSCAGGTSKEKASATHADTYGSTCAAGCGAGCG 67

BLAST of Cp4.1LG01g13810 vs. NCBI nr
Match: gi|1009131358|ref|XP_015882794.1| (PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-08
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1

Query: 1  MVRLLRDFS---GEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGGGPKDKTS-SHSD 60
          MVRL RD +   G G  GF+      +LW A++ + IIS +IFSC  G  K+KTS + ++
Sbjct: 1  MVRLWRDLASVHGSGSAGFV------VLWLALLGVCIISAIIFSCADGVSKEKTSTADTE 60

Query: 61 TYGAACAAGCGAGCG 72
           YG  CAAGCGAGCG
Sbjct: 61 LYGGGCAAGCGAGCG 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KUK0_CUCSA1.5e-1571.23Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610410 PE=4 SV=1[more]
A0A061ECN2_THECC2.4e-0846.67Uncharacterized protein OS=Theobroma cacao GN=TCM_009475 PE=4 SV=1[more]
A0A0D2PVP6_GOSRA4.0e-0857.69Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157800 PE=4 SV=1[more]
B9SJW1_RICCO9.0e-0851.32Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0576720 PE=4 SV=1[more]
V4TMG7_9ROSI9.0e-0853.25Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017364mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G68238.11.8e-0750.91 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700196930|gb|KGN52107.1|2.2e-1571.23hypothetical protein Csa_5G610410 [Cucumis sativus][more]
gi|590693054|ref|XP_007044227.1|3.4e-0846.67Uncharacterized protein TCM_009475 [Theobroma cacao][more]
gi|743920082|ref|XP_011004079.1|3.4e-0845.95PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica][more]
gi|763783111|gb|KJB50182.1|5.8e-0857.69hypothetical protein B456_008G157800 [Gossypium raimondii][more]
gi|1009131358|ref|XP_015882794.1|7.6e-0849.33PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g13810.1Cp4.1LG01g13810.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199FAMILY NOT NAMEDcoord: 1..72
score: 5.5
NoneNo IPR availablePANTHERPTHR37199:SF2SUBFAMILY NOT NAMEDcoord: 1..72
score: 5.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g13810CmaCh04G014900Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g13810CmoCh04G015630Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g13810Lsi04G002250Bottle gourd (USVL1VR-Ls)cpelsiB352
Cp4.1LG01g13810CsaV3_5G034590Cucumber (Chinese Long) v3cpecucB0543
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g13810Silver-seed gourdcarcpeB1466
Cp4.1LG01g13810Cucumber (Chinese Long) v3cpecucB0474
Cp4.1LG01g13810Cucumber (Chinese Long) v3cpecucB0539
Cp4.1LG01g13810Wax gourdcpewgoB0514
Cp4.1LG01g13810Wax gourdcpewgoB0557
Cp4.1LG01g13810Cucurbita pepo (Zucchini)cpecpeB040
Cp4.1LG01g13810Cucurbita pepo (Zucchini)cpecpeB205
Cp4.1LG01g13810Cucurbita pepo (Zucchini)cpecpeB345
Cp4.1LG01g13810Cucurbita pepo (Zucchini)cpecpeB378
Cp4.1LG01g13810Cucurbita pepo (Zucchini)cpecpeB399
Cp4.1LG01g13810Cucumber (Gy14) v1cgycpeB0750
Cp4.1LG01g13810Cucurbita maxima (Rimu)cmacpeB323
Cp4.1LG01g13810Cucurbita maxima (Rimu)cmacpeB429
Cp4.1LG01g13810Cucurbita maxima (Rimu)cmacpeB737
Cp4.1LG01g13810Cucurbita moschata (Rifu)cmocpeB115
Cp4.1LG01g13810Cucurbita moschata (Rifu)cmocpeB285
Cp4.1LG01g13810Cucurbita moschata (Rifu)cmocpeB392
Cp4.1LG01g13810Cucurbita moschata (Rifu)cmocpeB691
Cp4.1LG01g13810Wild cucumber (PI 183967)cpecpiB381
Cp4.1LG01g13810Wild cucumber (PI 183967)cpecpiB439
Cp4.1LG01g13810Cucumber (Chinese Long) v2cpecuB381
Cp4.1LG01g13810Cucumber (Chinese Long) v2cpecuB439
Cp4.1LG01g13810Bottle gourd (USVL1VR-Ls)cpelsiB371
Cp4.1LG01g13810Watermelon (Charleston Gray)cpewcgB388
Cp4.1LG01g13810Watermelon (Charleston Gray)cpewcgB401
Cp4.1LG01g13810Watermelon (97103) v1cpewmB427
Cp4.1LG01g13810Watermelon (97103) v1cpewmB470
Cp4.1LG01g13810Melon (DHL92) v3.5.1cpemeB363
Cp4.1LG01g13810Melon (DHL92) v3.5.1cpemeB395
Cp4.1LG01g13810Cucumber (Gy14) v2cgybcpeB063
Cp4.1LG01g13810Cucumber (Gy14) v2cgybcpeB648
Cp4.1LG01g13810Melon (DHL92) v3.6.1cpemedB423
Cp4.1LG01g13810Melon (DHL92) v3.6.1cpemedB458
Cp4.1LG01g13810Silver-seed gourdcarcpeB1177