Cp4.1LG01g13810.1 (mRNA) Cucurbita pepo (Zucchini)

NameCp4.1LG01g13810.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 8003625 .. 8003843 (-)
Sequence length219
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGGCTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGGCGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA

mRNA sequence

ATGGTGAGGCTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGGCGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA

Coding sequence (CDS)

ATGGTGAGGCTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGGCGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA

Protein sequence

MVRLLRDFSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDTYGAACAAGCGAGCGG
BLAST of Cp4.1LG01g13810.1 vs. TrEMBL
Match: A0A0A0KUK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610410 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-15
Identity = 52/73 (71.23%), Postives = 57/73 (78.08%), Query Frame = 1

Query: 1  MVRLLRDFSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGG-GPKDKTSSHSDTY- 60
          MVR+LRDF G   GG   A  VLI WA V+SISII+TVIFSCTGG G KDK +SH+DTY 
Sbjct: 1  MVRVLRDFHG---GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYG 60

Query: 61 GAACAAGCGAGCG 72
          GAACAAGCG GCG
Sbjct: 61 GAACAAGCGGGCG 70

BLAST of Cp4.1LG01g13810.1 vs. TrEMBL
Match: A0A061ECN2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_009475 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-08
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1

Query: 1   MVRLLRDFSGEGGGGFIN--APAVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDT 60
           MVRL ++ +   GG      +  V   WAA+ ++S+I+ ++ SC GG  KDK S+ H+D 
Sbjct: 73  MVRLWKEVARTDGGVSSQDLSSMVFFFWAALAALSLITAIMLSCAGGASKDKASATHTDA 132

Query: 61  YGAACAAGCGAGCGG 73
           YG+ CAAGCGAGCGG
Sbjct: 133 YGSTCAAGCGAGCGG 147

BLAST of Cp4.1LG01g13810.1 vs. TrEMBL
Match: A0A0D2PVP6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157800 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-08
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 1

Query: 21 AVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDTYGAACAAGCGAGCG 72
          AVL+ WA + ++S+++ +IFSC GG  K+K S+ H+DTYG+ CAAGCGAGCG
Sbjct: 16 AVLMFWAVLAALSLVTAIIFSCAGGTSKEKASATHADTYGSTCAAGCGAGCG 67

BLAST of Cp4.1LG01g13810.1 vs. TrEMBL
Match: B9SJW1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0576720 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.0e-08
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1

Query: 1  MVR--LLRDFSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGGGPKDKTS-SHSDT 60
          MVR  + R+ +  GGGG      ++ILWAA++ +++I+  IFSC GG  KDK S +  DT
Sbjct: 1  MVRAWIRREETSGGGGG---EGLLVILWAALICLTLITATIFSCAGGSSKDKASATQGDT 60

Query: 61 YGAA-CAAGCGAGCGG 73
          YGA+ CAAGCGA CGG
Sbjct: 61 YGASTCAAGCGAACGG 73

BLAST of Cp4.1LG01g13810.1 vs. TrEMBL
Match: V4TMG7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017364mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.0e-08
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1

Query: 1  MVR-LLRDFSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGGG--PKDKTS-SHSD 60
          MVR  LR+ +  G  G  +A  VL++WAA+VS+S+IS ++FSC GGG   KDK S +H+D
Sbjct: 1  MVREYLREITTRGDEGGSSA-VVLLIWAALVSLSVISAIVFSCAGGGGASKDKDSTTHAD 60

Query: 61 TY-GAACAAGCGAGCGG 73
           Y G+ C AGCGA CGG
Sbjct: 61 GYGGSTCVAGCGAACGG 76

BLAST of Cp4.1LG01g13810.1 vs. TAIR10
Match: AT1G68238.1 (AT1G68238.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.8e-07
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1

Query: 18 NAPAVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDTYGAACAAGCGAGCGG 73
          N    L +WAAVV+ S+I+ VIFSC+    K  T  + D  G++CAAGCG GCGG
Sbjct: 13 NGEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHT--NDDVNGSSCAAGCGGGCGG 65

BLAST of Cp4.1LG01g13810.1 vs. NCBI nr
Match: gi|700196930|gb|KGN52107.1| (hypothetical protein Csa_5G610410 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-15
Identity = 52/73 (71.23%), Postives = 57/73 (78.08%), Query Frame = 1

Query: 1  MVRLLRDFSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGG-GPKDKTSSHSDTY- 60
          MVR+LRDF G   GG   A  VLI WA V+SISII+TVIFSCTGG G KDK +SH+DTY 
Sbjct: 1  MVRVLRDFHG---GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYG 60

Query: 61 GAACAAGCGAGCG 72
          GAACAAGCG GCG
Sbjct: 61 GAACAAGCGGGCG 70

BLAST of Cp4.1LG01g13810.1 vs. NCBI nr
Match: gi|590693054|ref|XP_007044227.1| (Uncharacterized protein TCM_009475 [Theobroma cacao])

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1

Query: 1   MVRLLRDFSGEGGGGFIN--APAVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDT 60
           MVRL ++ +   GG      +  V   WAA+ ++S+I+ ++ SC GG  KDK S+ H+D 
Sbjct: 73  MVRLWKEVARTDGGVSSQDLSSMVFFFWAALAALSLITAIMLSCAGGASKDKASATHTDA 132

Query: 61  YGAACAAGCGAGCGG 73
           YG+ CAAGCGAGCGG
Sbjct: 133 YGSTCAAGCGAGCGG 147

BLAST of Cp4.1LG01g13810.1 vs. NCBI nr
Match: gi|743920082|ref|XP_011004079.1| (PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica])

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1

Query: 1  MVRLLRD-FSGEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDT-Y 60
          MVR L++  + +GGGG ++   ++ LWA ++++ ++S ++FSC  G  KDKTS    T Y
Sbjct: 1  MVRPLKEVLAVDGGGGGLDGSCLVFLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 61 GAACAAGCGAGCGG 73
          G  CAAGCGA CGG
Sbjct: 61 GGGCAAGCGAACGG 74

BLAST of Cp4.1LG01g13810.1 vs. NCBI nr
Match: gi|763783111|gb|KJB50182.1| (hypothetical protein B456_008G157800 [Gossypium raimondii])

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-08
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 1

Query: 21 AVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDTYGAACAAGCGAGCG 72
          AVL+ WA + ++S+++ +IFSC GG  K+K S+ H+DTYG+ CAAGCGAGCG
Sbjct: 16 AVLMFWAVLAALSLVTAIIFSCAGGTSKEKASATHADTYGSTCAAGCGAGCG 67

BLAST of Cp4.1LG01g13810.1 vs. NCBI nr
Match: gi|1009131358|ref|XP_015882794.1| (PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-08
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1

Query: 1  MVRLLRDFS---GEGGGGFINAPAVLILWAAVVSISIISTVIFSCTGGGPKDKTS-SHSD 60
          MVRL RD +   G G  GF+      +LW A++ + IIS +IFSC  G  K+KTS + ++
Sbjct: 1  MVRLWRDLASVHGSGSAGFV------VLWLALLGVCIISAIIFSCADGVSKEKTSTADTE 60

Query: 61 TYGAACAAGCGAGCG 72
           YG  CAAGCGAGCG
Sbjct: 61 LYGGGCAAGCGAGCG 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KUK0_CUCSA1.5e-1571.23Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610410 PE=4 SV=1[more]
A0A061ECN2_THECC2.4e-0846.67Uncharacterized protein OS=Theobroma cacao GN=TCM_009475 PE=4 SV=1[more]
A0A0D2PVP6_GOSRA4.0e-0857.69Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157800 PE=4 SV=1[more]
B9SJW1_RICCO9.0e-0851.32Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0576720 PE=4 SV=1[more]
V4TMG7_9ROSI9.0e-0853.25Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017364mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G68238.11.8e-0750.91 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700196930|gb|KGN52107.1|2.2e-1571.23hypothetical protein Csa_5G610410 [Cucumis sativus][more]
gi|590693054|ref|XP_007044227.1|3.4e-0846.67Uncharacterized protein TCM_009475 [Theobroma cacao][more]
gi|743920082|ref|XP_011004079.1|3.4e-0845.95PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica][more]
gi|763783111|gb|KJB50182.1|5.8e-0857.69hypothetical protein B456_008G157800 [Gossypium raimondii][more]
gi|1009131358|ref|XP_015882794.1|7.6e-0849.33PREDICTED: uncharacterized protein LOC107418606 [Ziziphus jujuba][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG01g13810Cp4.1LG01g13810gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g13810.1:cds:001Cp4.1LG01g13810.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG01g13810.1Cp4.1LG01g13810.1-proteinpolypeptide


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199FAMILY NOT NAMEDcoord: 1..72
score: 5.5
NoneNo IPR availablePANTHERPTHR37199:SF2SUBFAMILY NOT NAMEDcoord: 1..72
score: 5.5