CmoCh04G015630 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G015630
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 7992554 .. 7992772 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGGGTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGACGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA

mRNA sequence

ATGGTGAGGGTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGACGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA

Coding sequence (CDS)

ATGGTGAGGGTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGACGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA
Homology
[Close]
BLAST of CmoCh04G015630 vs. TrEMBL
Match: A0A0A0KUK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610410 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.9e-16
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 1 

Query: 1  MVRVLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGG-GPKDKTSSHSDTY- 60
          MVRVLRDF G   GG   A  VLI WA V+SISII+TVIFSCTGG G KDK +SH+DTY 
Sbjct: 1  MVRVLRDFHG---GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYG 60

Query: 61 GAACAAGCGAGCG 72
          GAACAAGCG GCG
Sbjct: 61 GAACAAGCGGGCG 70

[Close]
BLAST of CmoCh04G015630 vs. TrEMBL
Match: A0A061ECN2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_009475 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-08
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1 

Query: 1   MVRVLRDFSGEGGGGFIN--APTVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDT 60
           MVR+ ++ +   GG      +  V   WAA+ ++S+I+ ++ SC GG  KDK S+ H+D 
Sbjct: 73  MVRLWKEVARTDGGVSSQDLSSMVFFFWAALAALSLITAIMLSCAGGASKDKASATHTDA 132

Query: 61  YGAACAAGCGAGCGG 73
           YG+ CAAGCGAGCGG
Sbjct: 133 YGSTCAAGCGAGCGG 147

[Close]
BLAST of CmoCh04G015630 vs. TrEMBL
Match: B9SJW1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0576720 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.3e-08
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 1  MVR--VLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTS-SHSDT 60
          MVR  + R+ +  GGGG      ++ILWAA++ +++I+  IFSC GG  KDK S +  DT
Sbjct: 1  MVRAWIRREETSGGGGG---EGLLVILWAALICLTLITATIFSCAGGSSKDKASATQGDT 60

Query: 61 YGAA-CAAGCGAGCGG 73
          YGA+ CAAGCGA CGG
Sbjct: 61 YGASTCAAGCGAACGG 73

[Close]
BLAST of CmoCh04G015630 vs. TrEMBL
Match: V4TMG7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017364mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.9e-08
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 1  MVR-VLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGG--PKDKTS-SHSD 60
          MVR  LR+ +  G  G  +A  VL++WAA+VS+S+IS ++FSC GGG   KDK S +H+D
Sbjct: 1  MVREYLREITTRGDEGGSSA-VVLLIWAALVSLSVISAIVFSCAGGGGASKDKDSTTHAD 60

Query: 61 TY-GAACAAGCGAGCGG 73
           Y G+ C AGCGA CGG
Sbjct: 61 GYGGSTCVAGCGAACGG 76

[Close]
BLAST of CmoCh04G015630 vs. TrEMBL
Match: A0A0D2PVP6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157800 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 

Query: 22 VLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDTYGAACAAGCGAGCG 72
          VL+ WA + ++S+++ +IFSC GG  K+K S+ H+DTYG+ CAAGCGAGCG
Sbjct: 17 VLMFWAVLAALSLVTAIIFSCAGGTSKEKASATHADTYGSTCAAGCGAGCG 67

[Close]
BLAST of CmoCh04G015630 vs. TAIR10
Match: AT1G68238.1 (AT1G68238.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-07
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1 

Query: 18 NAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDTYGAACAAGCGAGCGG 73
          N    L +WAAVV+ S+I+ VIFSC+    K  T  + D  G++CAAGCG GCGG
Sbjct: 13 NGEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHT--NDDVNGSSCAAGCGGGCGG 65

[Close]
BLAST of CmoCh04G015630 vs. NCBI nr
Match: gi|700196930|gb|KGN52107.1| (hypothetical protein Csa_5G610410 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-16
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 1 

Query: 1  MVRVLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGG-GPKDKTSSHSDTY- 60
          MVRVLRDF G   GG   A  VLI WA V+SISII+TVIFSCTGG G KDK +SH+DTY 
Sbjct: 1  MVRVLRDFHG---GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYG 60

Query: 61 GAACAAGCGAGCG 72
          GAACAAGCG GCG
Sbjct: 61 GAACAAGCGGGCG 70

[Close]
BLAST of CmoCh04G015630 vs. NCBI nr
Match: gi|659066784|ref|XP_008461221.1| (PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1 

Query: 1   MVRVLRDFSGEGGG-GFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDTY 60
           M R++R+ SG+ G  G     T  + W A+ ++ IISTVIFSC+ G  KD+ S+   + Y
Sbjct: 36  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 95

Query: 61  GAACAAGCGAGCG 72
           G  CAAGCGAGCG
Sbjct: 96  GGGCAAGCGAGCG 108

[Close]
BLAST of CmoCh04G015630 vs. NCBI nr
Match: gi|743920082|ref|XP_011004079.1| (PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica])

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-08
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1 

Query: 1  MVRVLRD-FSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDT-Y 60
          MVR L++  + +GGGG ++   ++ LWA ++++ ++S ++FSC  G  KDKTS    T Y
Sbjct: 1  MVRPLKEVLAVDGGGGGLDGSCLVFLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 61 GAACAAGCGAGCGG 73
          G  CAAGCGA CGG
Sbjct: 61 GGGCAAGCGAACGG 74

[Close]
BLAST of CmoCh04G015630 vs. NCBI nr
Match: gi|590693054|ref|XP_007044227.1| (Uncharacterized protein TCM_009475 [Theobroma cacao])

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-08
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1 

Query: 1   MVRVLRDFSGEGGGGFIN--APTVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDT 60
           MVR+ ++ +   GG      +  V   WAA+ ++S+I+ ++ SC GG  KDK S+ H+D 
Sbjct: 73  MVRLWKEVARTDGGVSSQDLSSMVFFFWAALAALSLITAIMLSCAGGASKDKASATHTDA 132

Query: 61  YGAACAAGCGAGCGG 73
           YG+ CAAGCGAGCGG
Sbjct: 133 YGSTCAAGCGAGCGG 147

[Close]
BLAST of CmoCh04G015630 vs. NCBI nr
Match: gi|223534361|gb|EEF36069.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-08
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 1  MVR--VLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTS-SHSDT 60
          MVR  + R+ +  GGGG      ++ILWAA++ +++I+  IFSC GG  KDK S +  DT
Sbjct: 1  MVRAWIRREETSGGGGG---EGLLVILWAALICLTLITATIFSCAGGSSKDKASATQGDT 60

Query: 61 YGAA-CAAGCGAGCGG 73
          YGA+ CAAGCGA CGG
Sbjct: 61 YGASTCAAGCGAACGG 73

The following BLAST results are available for this feature:
BLAST of CmoCh04G015630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUK0_CUCSA6.9e-1672.60Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610410 PE=4 SV=1[more]
A0A061ECN2_THECC4.0e-0845.33Uncharacterized protein OS=Theobroma cacao GN=TCM_009475 PE=4 SV=1[more]
B9SJW1_RICCO5.3e-0851.32Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0576720 PE=4 SV=1[more]
V4TMG7_9ROSI6.9e-0853.25Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017364mg PE=4 SV=1[more]
A0A0D2PVP6_GOSRA1.2e-0756.86Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157800 PE=4 SV=1[more]
BLAST of CmoCh04G015630 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68238.11.4e-0750.91 unknown protein[more]
BLAST of CmoCh04G015630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196930|gb|KGN52107.1|9.9e-1672.60hypothetical protein Csa_5G610410 [Cucumis sativus][more]
gi|659066784|ref|XP_008461221.1|2.0e-0847.95PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo][more]
gi|743920082|ref|XP_011004079.1|2.6e-0845.95PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica][more]
gi|590693054|ref|XP_007044227.1|5.8e-0845.33Uncharacterized protein TCM_009475 [Theobroma cacao][more]
gi|223534361|gb|EEF36069.1|7.6e-0851.32conserved hypothetical protein [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G015630.1CmoCh04G015630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199FAMILY NOT NAMEDcoord: 1..72
score: 6.5
NoneNo IPR availablePANTHERPTHR37199:SF2SUBFAMILY NOT NAMEDcoord: 1..72
score: 6.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G015630CmaCh04G014900Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G015630Lsi04G002250Bottle gourd (USVL1VR-Ls)cmolsiB660
CmoCh04G015630Cp4.1LG01g13810Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G015630CsaV3_5G034590Cucumber (Chinese Long) v3cmocucB0874
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G015630Cucurbita pepo (Zucchini)cmocpeB651
CmoCh04G015630Cucurbita pepo (Zucchini)cmocpeB659
CmoCh04G015630Cucurbita pepo (Zucchini)cmocpeB681
CmoCh04G015630Cucurbita pepo (Zucchini)cmocpeB702
CmoCh04G015630Bottle gourd (USVL1VR-Ls)cmolsiB617
CmoCh04G015630Bottle gourd (USVL1VR-Ls)cmolsiB686
CmoCh04G015630Cucumber (Gy14) v2cgybcmoB123
CmoCh04G015630Cucumber (Gy14) v2cgybcmoB643
CmoCh04G015630Cucumber (Gy14) v2cgybcmoB650
CmoCh04G015630Melon (DHL92) v3.6.1cmomedB708
CmoCh04G015630Melon (DHL92) v3.6.1cmomedB720
CmoCh04G015630Melon (DHL92) v3.6.1cmomedB752
CmoCh04G015630Silver-seed gourdcarcmoB0814
CmoCh04G015630Silver-seed gourdcarcmoB1138
CmoCh04G015630Silver-seed gourdcarcmoB1412
CmoCh04G015630Cucumber (Chinese Long) v3cmocucB0803
CmoCh04G015630Cucumber (Chinese Long) v3cmocucB0863
CmoCh04G015630Watermelon (97103) v2cmowmbB683
CmoCh04G015630Watermelon (97103) v2cmowmbB729
CmoCh04G015630Watermelon (97103) v2cmowmbB745
CmoCh04G015630Wax gourdcmowgoB0847
CmoCh04G015630Wax gourdcmowgoB0830
CmoCh04G015630Wax gourdcmowgoB0892
CmoCh04G015630Cucurbita moschata (Rifu)cmocmoB074
CmoCh04G015630Cucurbita moschata (Rifu)cmocmoB126
CmoCh04G015630Cucurbita moschata (Rifu)cmocmoB265
CmoCh04G015630Cucurbita moschata (Rifu)cmocmoB336
CmoCh04G015630Cucurbita moschata (Rifu)cmocmoB469
CmoCh04G015630Cucumber (Gy14) v1cgycmoB0776
CmoCh04G015630Cucumber (Gy14) v1cgycmoB0793
CmoCh04G015630Cucurbita maxima (Rimu)cmacmoB312
CmoCh04G015630Cucurbita maxima (Rimu)cmacmoB420
CmoCh04G015630Cucurbita maxima (Rimu)cmacmoB743
CmoCh04G015630Wild cucumber (PI 183967)cmocpiB737
CmoCh04G015630Wild cucumber (PI 183967)cmocpiB745
CmoCh04G015630Cucumber (Chinese Long) v2cmocuB679
CmoCh04G015630Cucumber (Chinese Long) v2cmocuB738
CmoCh04G015630Cucumber (Chinese Long) v2cmocuB729
CmoCh04G015630Melon (DHL92) v3.5.1cmomeB620
CmoCh04G015630Melon (DHL92) v3.5.1cmomeB631
CmoCh04G015630Watermelon (Charleston Gray)cmowcgB642
CmoCh04G015630Watermelon (Charleston Gray)cmowcgB654
CmoCh04G015630Watermelon (Charleston Gray)cmowcgB668
CmoCh04G015630Watermelon (97103) v1cmowmB693
CmoCh04G015630Watermelon (97103) v1cmowmB712
CmoCh04G015630Watermelon (97103) v1cmowmB740