CmoCh04G015630.1 (mRNA) Cucurbita moschata (Rifu)

NameCmoCh04G015630.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 7992554 .. 7992772 (-)
Sequence length219
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGGGTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGACGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA

mRNA sequence

ATGGTGAGGGTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGACGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA

Coding sequence (CDS)

ATGGTGAGGGTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAACGCTCCGACGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA
BLAST of CmoCh04G015630.1 vs. TrEMBL
Match: A0A0A0KUK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610410 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.9e-16
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 1

Query: 1  MVRVLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGG-GPKDKTSSHSDTY- 60
          MVRVLRDF G   GG   A  VLI WA V+SISII+TVIFSCTGG G KDK +SH+DTY 
Sbjct: 1  MVRVLRDFHG---GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYG 60

Query: 61 GAACAAGCGAGCG 72
          GAACAAGCG GCG
Sbjct: 61 GAACAAGCGGGCG 70

BLAST of CmoCh04G015630.1 vs. TrEMBL
Match: A0A061ECN2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_009475 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-08
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1

Query: 1   MVRVLRDFSGEGGGGFIN--APTVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDT 60
           MVR+ ++ +   GG      +  V   WAA+ ++S+I+ ++ SC GG  KDK S+ H+D 
Sbjct: 73  MVRLWKEVARTDGGVSSQDLSSMVFFFWAALAALSLITAIMLSCAGGASKDKASATHTDA 132

Query: 61  YGAACAAGCGAGCGG 73
           YG+ CAAGCGAGCGG
Sbjct: 133 YGSTCAAGCGAGCGG 147

BLAST of CmoCh04G015630.1 vs. TrEMBL
Match: B9SJW1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0576720 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.3e-08
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1

Query: 1  MVR--VLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTS-SHSDT 60
          MVR  + R+ +  GGGG      ++ILWAA++ +++I+  IFSC GG  KDK S +  DT
Sbjct: 1  MVRAWIRREETSGGGGG---EGLLVILWAALICLTLITATIFSCAGGSSKDKASATQGDT 60

Query: 61 YGAA-CAAGCGAGCGG 73
          YGA+ CAAGCGA CGG
Sbjct: 61 YGASTCAAGCGAACGG 73

BLAST of CmoCh04G015630.1 vs. TrEMBL
Match: V4TMG7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017364mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.9e-08
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1

Query: 1  MVR-VLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGG--PKDKTS-SHSD 60
          MVR  LR+ +  G  G  +A  VL++WAA+VS+S+IS ++FSC GGG   KDK S +H+D
Sbjct: 1  MVREYLREITTRGDEGGSSA-VVLLIWAALVSLSVISAIVFSCAGGGGASKDKDSTTHAD 60

Query: 61 TY-GAACAAGCGAGCGG 73
           Y G+ C AGCGA CGG
Sbjct: 61 GYGGSTCVAGCGAACGG 76

BLAST of CmoCh04G015630.1 vs. TrEMBL
Match: A0A0D2PVP6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157800 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1

Query: 22 VLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDTYGAACAAGCGAGCG 72
          VL+ WA + ++S+++ +IFSC GG  K+K S+ H+DTYG+ CAAGCGAGCG
Sbjct: 17 VLMFWAVLAALSLVTAIIFSCAGGTSKEKASATHADTYGSTCAAGCGAGCG 67

BLAST of CmoCh04G015630.1 vs. TAIR10
Match: AT1G68238.1 (AT1G68238.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-07
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1

Query: 18 NAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDTYGAACAAGCGAGCGG 73
          N    L +WAAVV+ S+I+ VIFSC+    K  T  + D  G++CAAGCG GCGG
Sbjct: 13 NGEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHT--NDDVNGSSCAAGCGGGCGG 65

BLAST of CmoCh04G015630.1 vs. NCBI nr
Match: gi|700196930|gb|KGN52107.1| (hypothetical protein Csa_5G610410 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-16
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 1

Query: 1  MVRVLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGG-GPKDKTSSHSDTY- 60
          MVRVLRDF G   GG   A  VLI WA V+SISII+TVIFSCTGG G KDK +SH+DTY 
Sbjct: 1  MVRVLRDFHG---GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYG 60

Query: 61 GAACAAGCGAGCG 72
          GAACAAGCG GCG
Sbjct: 61 GAACAAGCGGGCG 70

BLAST of CmoCh04G015630.1 vs. NCBI nr
Match: gi|659066784|ref|XP_008461221.1| (PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1

Query: 1   MVRVLRDFSGEGGG-GFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDTY 60
           M R++R+ SG+ G  G     T  + W A+ ++ IISTVIFSC+ G  KD+ S+   + Y
Sbjct: 36  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 95

Query: 61  GAACAAGCGAGCG 72
           G  CAAGCGAGCG
Sbjct: 96  GGGCAAGCGAGCG 108

BLAST of CmoCh04G015630.1 vs. NCBI nr
Match: gi|743920082|ref|XP_011004079.1| (PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica])

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-08
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1

Query: 1  MVRVLRD-FSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDT-Y 60
          MVR L++  + +GGGG ++   ++ LWA ++++ ++S ++FSC  G  KDKTS    T Y
Sbjct: 1  MVRPLKEVLAVDGGGGGLDGSCLVFLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 61 GAACAAGCGAGCGG 73
          G  CAAGCGA CGG
Sbjct: 61 GGGCAAGCGAACGG 74

BLAST of CmoCh04G015630.1 vs. NCBI nr
Match: gi|590693054|ref|XP_007044227.1| (Uncharacterized protein TCM_009475 [Theobroma cacao])

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-08
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1

Query: 1   MVRVLRDFSGEGGGGFIN--APTVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDT 60
           MVR+ ++ +   GG      +  V   WAA+ ++S+I+ ++ SC GG  KDK S+ H+D 
Sbjct: 73  MVRLWKEVARTDGGVSSQDLSSMVFFFWAALAALSLITAIMLSCAGGASKDKASATHTDA 132

Query: 61  YGAACAAGCGAGCGG 73
           YG+ CAAGCGAGCGG
Sbjct: 133 YGSTCAAGCGAGCGG 147

BLAST of CmoCh04G015630.1 vs. NCBI nr
Match: gi|223534361|gb|EEF36069.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-08
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1

Query: 1  MVR--VLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTS-SHSDT 60
          MVR  + R+ +  GGGG      ++ILWAA++ +++I+  IFSC GG  KDK S +  DT
Sbjct: 1  MVRAWIRREETSGGGGG---EGLLVILWAALICLTLITATIFSCAGGSSKDKASATQGDT 60

Query: 61 YGAA-CAAGCGAGCGG 73
          YGA+ CAAGCGA CGG
Sbjct: 61 YGASTCAAGCGAACGG 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KUK0_CUCSA6.9e-1672.60Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610410 PE=4 SV=1[more]
A0A061ECN2_THECC4.0e-0845.33Uncharacterized protein OS=Theobroma cacao GN=TCM_009475 PE=4 SV=1[more]
B9SJW1_RICCO5.3e-0851.32Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0576720 PE=4 SV=1[more]
V4TMG7_9ROSI6.9e-0853.25Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017364mg PE=4 SV=1[more]
A0A0D2PVP6_GOSRA1.2e-0756.86Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G68238.11.4e-0750.91 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700196930|gb|KGN52107.1|9.9e-1672.60hypothetical protein Csa_5G610410 [Cucumis sativus][more]
gi|659066784|ref|XP_008461221.1|2.0e-0847.95PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo][more]
gi|743920082|ref|XP_011004079.1|2.6e-0845.95PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica][more]
gi|590693054|ref|XP_007044227.1|5.8e-0845.33Uncharacterized protein TCM_009475 [Theobroma cacao][more]
gi|223534361|gb|EEF36069.1|7.6e-0851.32conserved hypothetical protein [Ricinus communis][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G015630CmoCh04G015630gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G015630.1CmoCh04G015630.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G015630.1.CDS.1CmoCh04G015630.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G015630.1.exon.1CmoCh04G015630.1.exon.1exon


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199FAMILY NOT NAMEDcoord: 1..72
score: 6.5
NoneNo IPR availablePANTHERPTHR37199:SF2SUBFAMILY NOT NAMEDcoord: 1..72
score: 6.5