CmaCh04G014900 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G014900
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 7583134 .. 7583352 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGGGTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAATGCTCCGACGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCTGGCTGTGGAGCCGGCTGCGGCGGTTGA

mRNA sequence

ATGGTGAGGGTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAATGCTCCGACGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCTGGCTGTGGAGCCGGCTGCGGCGGTTGA

Coding sequence (CDS)

ATGGTGAGGGTATTGAGAGATTTCAGCGGCGAAGGCGGCGGAGGATTCATAAATGCTCCGACGGTTTTGATATTATGGGCGGCGGTCGTTTCCATTTCTATTATTTCAACCGTCATATTCTCCTGCACCGGCGGCGGCCCCAAGGATAAAACCTCCTCACATTCTGATACATACGGTGCCGCATGTGCTGCTGGCTGTGGAGCCGGCTGCGGCGGTTGA

Protein sequence

MVRVLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDTYGAACAAGCGAGCGG
Homology
[Close]
BLAST of CmaCh04G014900 vs. TrEMBL
Match: A0A0A0KUK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610410 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.9e-16
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 1 

Query: 1  MVRVLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGG-GPKDKTSSHSDTY- 60
          MVRVLRDF G   GG   A  VLI WA V+SISII+TVIFSCTGG G KDK +SH+DTY 
Sbjct: 1  MVRVLRDFHG---GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYG 60

Query: 61 GAACAAGCGAGCG 72
          GAACAAGCG GCG
Sbjct: 61 GAACAAGCGGGCG 70

[Close]
BLAST of CmaCh04G014900 vs. TrEMBL
Match: A0A061ECN2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_009475 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-08
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1 

Query: 1   MVRVLRDFSGEGGGGFIN--APTVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDT 60
           MVR+ ++ +   GG      +  V   WAA+ ++S+I+ ++ SC GG  KDK S+ H+D 
Sbjct: 73  MVRLWKEVARTDGGVSSQDLSSMVFFFWAALAALSLITAIMLSCAGGASKDKASATHTDA 132

Query: 61  YGAACAAGCGAGCGG 73
           YG+ CAAGCGAGCGG
Sbjct: 133 YGSTCAAGCGAGCGG 147

[Close]
BLAST of CmaCh04G014900 vs. TrEMBL
Match: B9SJW1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0576720 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.3e-08
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 1  MVR--VLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTS-SHSDT 60
          MVR  + R+ +  GGGG      ++ILWAA++ +++I+  IFSC GG  KDK S +  DT
Sbjct: 1  MVRAWIRREETSGGGGG---EGLLVILWAALICLTLITATIFSCAGGSSKDKASATQGDT 60

Query: 61 YGAA-CAAGCGAGCGG 73
          YGA+ CAAGCGA CGG
Sbjct: 61 YGASTCAAGCGAACGG 73

[Close]
BLAST of CmaCh04G014900 vs. TrEMBL
Match: V4TMG7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017364mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.9e-08
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 1  MVR-VLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGG--PKDKTS-SHSD 60
          MVR  LR+ +  G  G  +A  VL++WAA+VS+S+IS ++FSC GGG   KDK S +H+D
Sbjct: 1  MVREYLREITTRGDEGGSSA-VVLLIWAALVSLSVISAIVFSCAGGGGASKDKDSTTHAD 60

Query: 61 TY-GAACAAGCGAGCGG 73
           Y G+ C AGCGA CGG
Sbjct: 61 GYGGSTCVAGCGAACGG 76

[Close]
BLAST of CmaCh04G014900 vs. TrEMBL
Match: A0A0D2PVP6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157800 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 

Query: 22 VLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDTYGAACAAGCGAGCG 72
          VL+ WA + ++S+++ +IFSC GG  K+K S+ H+DTYG+ CAAGCGAGCG
Sbjct: 17 VLMFWAVLAALSLVTAIIFSCAGGTSKEKASATHADTYGSTCAAGCGAGCG 67

[Close]
BLAST of CmaCh04G014900 vs. TAIR10
Match: AT1G68238.1 (AT1G68238.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-07
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1 

Query: 18 NAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDTYGAACAAGCGAGCGG 73
          N    L +WAAVV+ S+I+ VIFSC+    K  T  + D  G++CAAGCG GCGG
Sbjct: 13 NGEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHT--NDDVNGSSCAAGCGGGCGG 65

[Close]
BLAST of CmaCh04G014900 vs. NCBI nr
Match: gi|700196930|gb|KGN52107.1| (hypothetical protein Csa_5G610410 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-16
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 1 

Query: 1  MVRVLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGG-GPKDKTSSHSDTY- 60
          MVRVLRDF G   GG   A  VLI WA V+SISII+TVIFSCTGG G KDK +SH+DTY 
Sbjct: 1  MVRVLRDFHG---GGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYG 60

Query: 61 GAACAAGCGAGCG 72
          GAACAAGCG GCG
Sbjct: 61 GAACAAGCGGGCG 70

[Close]
BLAST of CmaCh04G014900 vs. NCBI nr
Match: gi|659066784|ref|XP_008461221.1| (PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1 

Query: 1   MVRVLRDFSGEGGG-GFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDTY 60
           M R++R+ SG+ G  G     T  + W A+ ++ IISTVIFSC+ G  KD+ S+   + Y
Sbjct: 36  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 95

Query: 61  GAACAAGCGAGCG 72
           G  CAAGCGAGCG
Sbjct: 96  GGGCAAGCGAGCG 108

[Close]
BLAST of CmaCh04G014900 vs. NCBI nr
Match: gi|743920082|ref|XP_011004079.1| (PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica])

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-08
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1 

Query: 1  MVRVLRD-FSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTSSHSDT-Y 60
          MVR L++  + +GGGG ++   ++ LWA ++++ ++S ++FSC  G  KDKTS    T Y
Sbjct: 1  MVRPLKEVLAVDGGGGGLDGSCLVFLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLY 60

Query: 61 GAACAAGCGAGCGG 73
          G  CAAGCGA CGG
Sbjct: 61 GGGCAAGCGAACGG 74

[Close]
BLAST of CmaCh04G014900 vs. NCBI nr
Match: gi|590693054|ref|XP_007044227.1| (Uncharacterized protein TCM_009475 [Theobroma cacao])

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-08
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1 

Query: 1   MVRVLRDFSGEGGGGFIN--APTVLILWAAVVSISIISTVIFSCTGGGPKDKTSS-HSDT 60
           MVR+ ++ +   GG      +  V   WAA+ ++S+I+ ++ SC GG  KDK S+ H+D 
Sbjct: 73  MVRLWKEVARTDGGVSSQDLSSMVFFFWAALAALSLITAIMLSCAGGASKDKASATHTDA 132

Query: 61  YGAACAAGCGAGCGG 73
           YG+ CAAGCGAGCGG
Sbjct: 133 YGSTCAAGCGAGCGG 147

[Close]
BLAST of CmaCh04G014900 vs. NCBI nr
Match: gi|223534361|gb|EEF36069.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-08
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 1  MVR--VLRDFSGEGGGGFINAPTVLILWAAVVSISIISTVIFSCTGGGPKDKTS-SHSDT 60
          MVR  + R+ +  GGGG      ++ILWAA++ +++I+  IFSC GG  KDK S +  DT
Sbjct: 1  MVRAWIRREETSGGGGG---EGLLVILWAALICLTLITATIFSCAGGSSKDKASATQGDT 60

Query: 61 YGAA-CAAGCGAGCGG 73
          YGA+ CAAGCGA CGG
Sbjct: 61 YGASTCAAGCGAACGG 73

The following BLAST results are available for this feature:
BLAST of CmaCh04G014900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G014900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUK0_CUCSA6.9e-1672.60Uncharacterized protein OS=Cucumis sativus GN=Csa_5G610410 PE=4 SV=1[more]
A0A061ECN2_THECC4.0e-0845.33Uncharacterized protein OS=Theobroma cacao GN=TCM_009475 PE=4 SV=1[more]
B9SJW1_RICCO5.3e-0851.32Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0576720 PE=4 SV=1[more]
V4TMG7_9ROSI6.9e-0853.25Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017364mg PE=4 SV=1[more]
A0A0D2PVP6_GOSRA1.2e-0756.86Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157800 PE=4 SV=1[more]
BLAST of CmaCh04G014900 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68238.11.4e-0750.91 unknown protein[more]
BLAST of CmaCh04G014900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196930|gb|KGN52107.1|9.9e-1672.60hypothetical protein Csa_5G610410 [Cucumis sativus][more]
gi|659066784|ref|XP_008461221.1|2.0e-0847.95PREDICTED: uncharacterized protein LOC103499844 [Cucumis melo][more]
gi|743920082|ref|XP_011004079.1|2.6e-0845.95PREDICTED: uncharacterized protein LOC105110673 [Populus euphratica][more]
gi|590693054|ref|XP_007044227.1|5.8e-0845.33Uncharacterized protein TCM_009475 [Theobroma cacao][more]
gi|223534361|gb|EEF36069.1|7.6e-0851.32conserved hypothetical protein [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G014900.1CmaCh04G014900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37199FAMILY NOT NAMEDcoord: 1..72
score: 6.5
NoneNo IPR availablePANTHERPTHR37199:SF2SUBFAMILY NOT NAMEDcoord: 1..72
score: 6.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G014900CmoCh04G015630Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G014900Lsi04G002250Bottle gourd (USVL1VR-Ls)cmalsiB669
CmaCh04G014900Cp4.1LG01g13810Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G014900CsaV3_5G034590Cucumber (Chinese Long) v3cmacucB0885
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G014900Cucurbita pepo (Zucchini)cmacpeB728
CmaCh04G014900Cucurbita pepo (Zucchini)cmacpeB700
CmaCh04G014900Cucurbita pepo (Zucchini)cmacpeB748
CmaCh04G014900Bottle gourd (USVL1VR-Ls)cmalsiB627
CmaCh04G014900Bottle gourd (USVL1VR-Ls)cmalsiB693
CmaCh04G014900Cucumber (Gy14) v2cgybcmaB131
CmaCh04G014900Cucumber (Gy14) v2cgybcmaB662
CmaCh04G014900Cucumber (Gy14) v2cgybcmaB672
CmaCh04G014900Melon (DHL92) v3.6.1cmamedB712
CmaCh04G014900Melon (DHL92) v3.6.1cmamedB726
CmaCh04G014900Melon (DHL92) v3.6.1cmamedB755
CmaCh04G014900Silver-seed gourdcarcmaB0836
CmaCh04G014900Silver-seed gourdcarcmaB1102
CmaCh04G014900Silver-seed gourdcarcmaB1170
CmaCh04G014900Silver-seed gourdcarcmaB1457
CmaCh04G014900Cucumber (Chinese Long) v3cmacucB0817
CmaCh04G014900Cucumber (Chinese Long) v3cmacucB0875
CmaCh04G014900Watermelon (97103) v2cmawmbB711
CmaCh04G014900Watermelon (97103) v2cmawmbB758
CmaCh04G014900Watermelon (97103) v2cmawmbB771
CmaCh04G014900Wax gourdcmawgoB0833
CmaCh04G014900Wax gourdcmawgoB0850
CmaCh04G014900Wax gourdcmawgoB0893
CmaCh04G014900Cucurbita maxima (Rimu)cmacmaB165
CmaCh04G014900Cucurbita maxima (Rimu)cmacmaB329
CmaCh04G014900Cucurbita maxima (Rimu)cmacmaB402
CmaCh04G014900Cucurbita maxima (Rimu)cmacmaB537
CmaCh04G014900Cucumber (Gy14) v1cgycmaB0781
CmaCh04G014900Cucumber (Gy14) v1cgycmaB0801
CmaCh04G014900Cucurbita moschata (Rifu)cmacmoB696
CmaCh04G014900Cucurbita moschata (Rifu)cmacmoB706
CmaCh04G014900Cucurbita moschata (Rifu)cmacmoB742
CmaCh04G014900Wild cucumber (PI 183967)cmacpiB695
CmaCh04G014900Wild cucumber (PI 183967)cmacpiB744
CmaCh04G014900Wild cucumber (PI 183967)cmacpiB755
CmaCh04G014900Cucumber (Chinese Long) v2cmacuB737
CmaCh04G014900Cucumber (Chinese Long) v2cmacuB686
CmaCh04G014900Cucumber (Chinese Long) v2cmacuB748
CmaCh04G014900Melon (DHL92) v3.5.1cmameB630
CmaCh04G014900Melon (DHL92) v3.5.1cmameB640
CmaCh04G014900Melon (DHL92) v3.5.1cmameB673
CmaCh04G014900Watermelon (Charleston Gray)cmawcgB640
CmaCh04G014900Watermelon (Charleston Gray)cmawcgB655
CmaCh04G014900Watermelon (Charleston Gray)cmawcgB666
CmaCh04G014900Watermelon (97103) v1cmawmB699
CmaCh04G014900Watermelon (97103) v1cmawmB716
CmaCh04G014900Watermelon (97103) v1cmawmB746