Cp4.1LG01g13390 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g13390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	DNL-type zinc finger protein
Location	Cp4.1LG01 : 8285996 .. 8288072 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGTTGGAGGAATACGACATGTCGGCTTTCTAGAGTATGTAGAAAGCACCTGGAGGGGAGCGTACTGTATAAGCGACCACCGAATCCATGGCAGCGGCAAAGACACTGTGTTCTTCGTCTCCCGCGCTTCTTCAGCAATCCTTTAACCCTTCCCAGACTCGGCCGCATCCATCTATCAAGGCATTCAGACCTATCGTCTCTTCGAAAGCAAACCCTAGCAATGGCTTCTTCATTAGGTAAATAATCATTAGCTTCCGTCGTTTGGATTCCCGTCCTCACTGTGCTTTCCACTAGAAAATTGAGCATTTCTTTTCCAGGAGTAGAAGCTTTCGTACAGCACCGGTTACTCGGGAAAACCGAAATAAGGTGCTTACGGTTTCAAGATTGGTGGATGGTAATTCTGGCGGTGACGATGAATCTGCACAGAGAAATTCGGATACGGTACGAGTAGCTAGCGGAACTCAGTTCCATAATGAATCTCTTCATGTTCCAGTATTCTGTGTTTTGTTTGAATCAGTTAAAGCTTCATGTTGAATTGAGCTAGAGATTCTTGAACTTATGGATTGTGTTTATCTTTCTTCGATTTGCAGGGGGCAGCCATTGATATAAAGCTTCCAAGAAGAAGTTTGCTGGTAACGTTTACCTGTAACCAATGTGGTGATAGAACGAAGAGGCTCATCAATCGATTAGCTTACGAACGGGGGCTTGTTTTTGTTCAGGTACGCGCTGGTGCTTTTGTTTGCAATTTGTATTCCAAAACAACAAAAGGAGGAGTATGTAGAGTGAAGCAGCATCTTTCTGGTGGTATAGAAATATAATTACTTGCAAAAAAAATGTTCAAATCATATAAAAGAACTGAAGATTGAAAGAAATTTTGCACAAAAAATGGAAGATGTTGGGCTCACTTTTGATGAGGAAGGTGATGATTTGGAGGTAAATTATCTAAGGAAGAGGTCTCATCAAGTCGAAGCCATAAAAAGATGGTTTAGAATCAGTTGAATTGTGATATCCCACGTTGGTGGGGGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACCTTCCCACGCGTTTTAAAGCTTTGAGGGGAAGTCCGAAAGGGAAAACTCAAAGAGAATAATATCTGCTAGCGGTGGATCTTCTGGGTCGTTACATGAATCTTCTAGGAAGAAGCCTAGAGCAAAGAGTTCAAATAAACACACAATCAACCATGAATAATGTTTATAAAAAAGAAAAGAGGAAGCATGCATTTCTAAGTGTATTTTAAGATGGTTTTATGATGCTGGAATTCCCTTGAATGCTTGCAATTATGATAGTTTTTAGGACAGTATGGCGTTGGAATGAAACTGGCTGACTTACTATGAATTGAAAGTGCCAATCGTTTCTTGAATTTCTATGGGAGCTTTTGACCTCTGGATGCTTGCGATAGTGCTTATGATTGATTAATGGTAGCAAATGTTGATACAGGGTTTCTTAATTTGGGTGGTCGGATGCTTACCAATTGATATTCTGTACAGTGTGCAGGGTGTCTAAAGTATCACAAACTGGTTGATAATCTTGGTCTTATTGTAGAGTATGACTTCCGAGAGGACGACGTGGATGTGAACTCGAATTCAGATCAAGTTTGATGTGTTTAAATGGTGTCATTTCCATGTTTGAATCGTTGTTGAAATATCATTTACATTGCTGGTGCACCTTTTTTTTCCCTTTATCCCTCCTGGTTATTTGCAATCCCATTGATTCCTCCTGGGACTGATATGGCAGGCAAAATGGATTGTTGGCTATTGCATTTGATCCATAATGATTATAGAAAAGAAAGGTTGTAGGCATCAAAGAATTAACCTATTTATTGTCGATCCGAGCAAGAGCACAATGTATAAGACATCAATTATCTTTGATAGTTCGTTCTCCGACTCTTGCGATCGTTAGACCTCCAAAAAAGAGAATAACTGAACTGATCATCTCTTTTTGAATCAACAGAACAATATGTGGAAGATGTGATGCATCTTAGTGATAAATTTTGATTAGAAGTTCATCTGTACTTTCACTTGCATCAGACTGGCTCGTCTGATGAG

mRNA sequence

GTAGTTGGAGGAATACGACATGTCGGCTTTCTAGAGTATGTAGAAAGCACCTGGAGGGGAGCGTACTGTATAAGCGACCACCGAATCCATGGCAGCGGCAAAGACACTGTGTTCTTCGTCTCCCGCGCTTCTTCAGCAATCCTTTAACCCTTCCCAGACTCGGCCGCATCCATCTATCAAGGCATTCAGACCTATCGTCTCTTCGAAAGCAAACCCTAGCAATGGCTTCTTCATTAGGAGTAGAAGCTTTCGTACAGCACCGGTTACTCGGGAAAACCGAAATAAGGTGCTTACGGTTTCAAGATTGGTGGATGGTAATTCTGGCGGTGACGATGAATCTGCACAGAGAAATTCGGATACGGGGGCAGCCATTGATATAAAGCTTCCAAGAAGAAGTTTGCTGTGTGCAGGGTGTCTAAAGTATCACAAACTGGTTGATAATCTTGGTCTTATTGTAGAGTATGACTTCCGAGAGGACGACGTGGATGTGAACTCGAATTCAGATCAAGTTTGATGTGTTTAAATGGTGTCATTTCCATGTTTGAATCGTTGTTGAAATATCATTTACATTGCTGGTGCACCTTTTTTTTCCCTTTATCCCTCCTGGTTATTTGCAATCCCATTGATTCCTCCTGGGACTGATATGGCAGGCAAAATGGATTGTTGGCTATTGCATTTGATCCATAATGATTATAGAAAAGAAAGGTTGTAGGCATCAAAGAATTAACCTATTTATTGTCGATCCGAGCAAGAGCACAATGTATAAGACATCAATTATCTTTGATAGTTCGTTCTCCGACTCTTGCGATCGTTAGACCTCCAAAAAAGAGAATAACTGAACTGATCATCTCTTTTTGAATCAACAGAACAATATGTGGAAGATGTGATGCATCTTAGTGATAAATTTTGATTAGAAGTTCATCTGTACTTTCACTTGCATCAGACTGGCTCGTCTGATGAG

Coding sequence (CDS)

ATGGCAGCGGCAAAGACACTGTGTTCTTCGTCTCCCGCGCTTCTTCAGCAATCCTTTAACCCTTCCCAGACTCGGCCGCATCCATCTATCAAGGCATTCAGACCTATCGTCTCTTCGAAAGCAAACCCTAGCAATGGCTTCTTCATTAGGAGTAGAAGCTTTCGTACAGCACCGGTTACTCGGGAAAACCGAAATAAGGTGCTTACGGTTTCAAGATTGGTGGATGGTAATTCTGGCGGTGACGATGAATCTGCACAGAGAAATTCGGATACGGGGGCAGCCATTGATATAAAGCTTCCAAGAAGAAGTTTGCTGTGTGCAGGGTGTCTAAAGTATCACAAACTGGTTGATAATCTTGGTCTTATTGTAGAGTATGACTTCCGAGAGGACGACGTGGATGTGAACTCGAATTCAGATCAAGTTTGA

Protein sequence

MAAAKTLCSSSPALLQQSFNPSQTRPHPSIKAFRPIVSSKANPSNGFFIRSRSFRTAPVTRENRNKVLTVSRLVDGNSGGDDESAQRNSDTGAAIDIKLPRRSLLCAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV

Homology

[Close]

BLAST of Cp4.1LG01g13390 vs. TrEMBL
Match: A0A0A0KR03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608180 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-50
Identity = 114/170 (67.06%), Postives = 126/170 (74.12%), Query Frame = 1


Query: 1   MAAAKTLCSSSPALLQQSFNPSQTRPHPSIKAFRPIVSSKANPSNGFFIRSRSFRTAPVT 60
           MAAA T+  SSP LLQ SFNPSQTRPHPSI +F+PIVSSKANPSNG FIRSR+F TAPV+
Sbjct: 4   MAAAYTVIFSSPTLLQHSFNPSQTRPHPSITSFKPIVSSKANPSNGVFIRSRNFCTAPVS 63

Query: 61  RENRNKVLTVSRLVDGNSGGDDESAQRNSDTGAAIDIKLPRRSLL--------------- 120
           RE R KVLTVS LVDG +G DDE +QRNSDTGAAIDIKLPRRSL+               
Sbjct: 64  RERRYKVLTVSSLVDGYTGDDDEPSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKRL 123

Query: 121 --------------CAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV 142
                         CAGC KYHKLVDNLGLIVEYDFRE+DVD++S+SDQV
Sbjct: 124 INRLAYERGLVFVQCAGCQKYHKLVDNLGLIVEYDFREEDVDLDSSSDQV 173

[Close]

BLAST of Cp4.1LG01g13390 vs. TrEMBL
Match: M5XGY6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012145mg PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-15
Identity = 74/185 (40.00%), Postives = 91/185 (49.19%), Query Frame = 1


Query: 1   MAAAKTLCSSSPALLQQSFNPSQTRPHPSIKAF------RPIVSSKANPSNGFF------ 60
           MAA  T  S SPAL   S +   T  H  IKA       RP  S+K NP  G        
Sbjct: 1   MAATLTAWSLSPAL--PSLSSPITNSHKPIKALLHPNFLRPFSSTKTNPVIGLSRSLTQV 60

Query: 61  ---IRSRSFRTAPVTRENRNKVLTVSRLVDGNSGGDDESAQRNSDTGAAIDIKLPRRSLL 120
              + SR   TA V  +   KVL VS L++GN   D E  +   +T A IDI+LPRRSLL
Sbjct: 61  QNPLCSRISYTAAVAPKRAYKVLAVSGLLNGNFETDGELERNIPNTDATIDIQLPRRSLL 120

Query: 121 -----------------------------CAGCLKYHKLVDNLGLIVEYDFREDDVDVNS 142
                                        CAGCLK+HKLVDNLGL+VEYD R+ D+DV++
Sbjct: 121 VKFTCDLCGERTDRLVNRLAYERGLIYVQCAGCLKHHKLVDNLGLVVEYDLRK-DIDVDT 180

[Close]

BLAST of Cp4.1LG01g13390 vs. TrEMBL
Match: W9R2L6_9ROSA (DNL-type zinc finger protein OS=Morus notabilis GN=L484_025823 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 63/179 (35.20%), Postives = 84/179 (46.93%), Query Frame = 1


Query: 1   MAAAKTLCSSSPALLQQSFNPSQTRPHP------SIKAFRPIVSSKANPS---NGFFIRS 60
           MA   T+C  SPAL   S + S    H       S  +F+P  SSK  P+   +   +  
Sbjct: 7   MAVTTTVCGLSPALNSHSLSSSTADLHRPTNSLLSFNSFKPFSSSKPQPTINLSRLILSH 66

Query: 61  RSFRTAPVTRENRNKVLTVSRLVDGNSGGDDESAQRNSDTGAAIDIKLPRRSLL------ 120
           R  +  P       K+L +S    GNS    ES   +S++ A +DIKLPRRSLL      
Sbjct: 67  RKTKRGP-------KILVIS----GNSETCPESEPNDSNSEATVDIKLPRRSLLVQFTCD 126

Query: 121 -----------------------CAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV 142
                                  CAGCL++HKLVDNLGL+VEYD RE +++ + N D V
Sbjct: 127 LCGERTQRLVNRLAYERGLIYVQCAGCLQHHKLVDNLGLVVEYDLRE-EINADRNEDDV 173

[Close]

BLAST of Cp4.1LG01g13390 vs. TrEMBL
Match: B9HWP4_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s14240g PE=4 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 66/174 (37.93%), Postives = 82/174 (47.13%), Query Frame = 1


Query: 2   AAAKTL--CSSSPALLQQSFNPSQTRPHPSI--KAFRPIVSSKANPSNGFFIRSRSFRTA 61
           AAA TL  CS  P L     NP +   +P +   +++PI  S  NP      R R   T 
Sbjct: 3   AAAATLSQCSFLPTLTCMKPNPKRKPIYPLLFPNSYKPISFSTTNP------RLRISHTE 62

Query: 62  PVTRENRNKVLTVSRLVDGNSGGDDESAQRN-SDTGAAIDIKLPRRSLL----------- 121
            +  +    +  VS LVDGNS    E    + ++  A IDIKLPRRSLL           
Sbjct: 63  AILPKRSRGLFVVSGLVDGNSETYPEVESNDLNEESATIDIKLPRRSLLVQFTCNECGER 122

Query: 122 ------------------CAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV 142
                             CAGC +YHKL DNLGLIVEYD RE ++   SN+DQV
Sbjct: 123 SQRLINRLAYERGLVFVQCAGCERYHKLADNLGLIVEYDLRE-EISAESNADQV 169

[Close]

BLAST of Cp4.1LG01g13390 vs. TrEMBL
Match: V4KB89_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10019239mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.9e-12
Identity = 65/170 (38.24%), Postives = 88/170 (51.76%), Query Frame = 1


Query: 4   AKTLCSSSPALLQQSFNPSQTRPHPSIKAFRP-IVSSKANPSNGFFIRSRSFRTAPVTRE 63
           A T+   SP +L   ++P      P I  F+P ++S K NP +    RSR+ R   V  +
Sbjct: 2   ANTVAGLSP-VLAPFYSPITVNRKP-INFFKPHLLSYKQNPISTLH-RSRTARVIEVAPK 61

Query: 64  NRNKVLTVSRLVDGNSGGDDESAQRNSDTG--AAIDIKLPRRSLL--------------- 123
            RN + TV   +  +SG + E   ++S  G  A+IDIKLPRRSLL               
Sbjct: 62  RRNLLFTVFGSLTDDSGLNPEEESKDSAEGQVASIDIKLPRRSLLVEFSCNSCGERTKRL 121

Query: 124 --------------CAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV 142
                         CAGCL++HKLVDNLGLIVEYDFR+   D+  ++DQV
Sbjct: 122 INRLAYERGLVFVQCAGCLRHHKLVDNLGLIVEYDFRKTSEDL--STDQV 166

[Close]

BLAST of Cp4.1LG01g13390 vs. TAIR10
Match: AT1G68730.1 (AT1G68730.1 Zim17-type zinc finger protein)

HSP 1 Score: 67.8 bits (164), Expect = 6.2e-12
Identity = 60/170 (35.29%), Postives = 83/170 (48.82%), Query Frame = 1


Query: 4   AKTLCSSSPALLQQSFNPSQTRP---HPSIKAFRPI--VSSKANPSNGFFIRSRSFRTAP 63
           A T    SP +L   ++P  T+P   H S   ++P      + NP +    RS++ R   
Sbjct: 2   ANTAAGWSP-VLAPIYSPVNTKPINFHFSASFYKPPRPFYKQQNPISALH-RSKTTRVIE 61

Query: 64  V-TRENRNKVLTV-SRLVDGNSGGDDESAQRNSDTGAAIDIKLPRRSL------------ 123
           V T + RN+  +V   L D +    DE +  +++  A+IDIKLPRRSL            
Sbjct: 62  VVTPKQRNRSFSVFGSLADDSKLNPDEESNDSAEV-ASIDIKLPRRSLQVEFTCNSCGER 121

Query: 124 -----------------LCAGCLKYHKLVDNLGLIVEYDFREDDVDVNSN 138
                             CAGCLK+HKLVDNLGLIVEYDFRE   D+ ++
Sbjct: 122 TKRLINRHAYEKGLVFVQCAGCLKHHKLVDNLGLIVEYDFRETSKDLGTD 168

[Close]

BLAST of Cp4.1LG01g13390 vs. NCBI nr
Match: gi|449434682|ref|XP_004135125.1| (PREDICTED: uncharacterized protein C24H6.02c isoform X2 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-50
Identity = 114/170 (67.06%), Postives = 126/170 (74.12%), Query Frame = 1


Query: 1   MAAAKTLCSSSPALLQQSFNPSQTRPHPSIKAFRPIVSSKANPSNGFFIRSRSFRTAPVT 60
           MAAA T+  SSP LLQ SFNPSQTRPHPSI +F+PIVSSKANPSNG FIRSR+F TAPV+
Sbjct: 4   MAAAYTVIFSSPTLLQHSFNPSQTRPHPSITSFKPIVSSKANPSNGVFIRSRNFCTAPVS 63

Query: 61  RENRNKVLTVSRLVDGNSGGDDESAQRNSDTGAAIDIKLPRRSLL--------------- 120
           RE R KVLTVS LVDG +G DDE +QRNSDTGAAIDIKLPRRSL+               
Sbjct: 64  RERRYKVLTVSSLVDGYTGDDDEPSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKRL 123

Query: 121 --------------CAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV 142
                         CAGC KYHKLVDNLGLIVEYDFRE+DVD++S+SDQV
Sbjct: 124 INRLAYERGLVFVQCAGCQKYHKLVDNLGLIVEYDFREEDVDLDSSSDQV 173

[Close]

BLAST of Cp4.1LG01g13390 vs. NCBI nr
Match: gi|659091399|ref|XP_008446529.1| (PREDICTED: uncharacterized protein C24H6.02c isoform X2 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 2.0e-49
Identity = 112/170 (65.88%), Postives = 123/170 (72.35%), Query Frame = 1


Query: 1   MAAAKTLCSSSPALLQQSFNPSQTRPHPSIKAFRPIVSSKANPSNGFFIRSRSFRTAPVT 60
           MAAAKT+  SSP LL   FNPSQT PHPSI +F+PI+SSKANPSNG FIRSR+F TAPVT
Sbjct: 1   MAAAKTVIFSSPTLLHHCFNPSQTPPHPSINSFKPILSSKANPSNGVFIRSRNFCTAPVT 60

Query: 61  RENRNKVLTVSRLVDGNSGGDDESAQRNSDTGAAIDIKLPRRSLL--------------- 120
           R  R KVLTVS LVDG +G DDES+QRNSDTGAAIDIKLPRRSL+               
Sbjct: 61  RGRRYKVLTVSSLVDGYTGDDDESSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKRL 120

Query: 121 --------------CAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV 142
                         CAGC KYHKLVDNLGLIVEYDFRE+D D++SNSDQV
Sbjct: 121 INRLAYERGLVFVQCAGCQKYHKLVDNLGLIVEYDFREEDTDLDSNSDQV 170

[Close]

BLAST of Cp4.1LG01g13390 vs. NCBI nr
Match: gi|778705830|ref|XP_011655750.1| (PREDICTED: uncharacterized protein LOC101206910 isoform X1 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 9.9e-36
Identity = 87/122 (71.31%), Postives = 97/122 (79.51%), Query Frame = 1


Query: 1   MAAAKTLCSSSPALLQQSFNPSQTRPHPSIKAFRPIVSSKANPSNGFFIRSRSFRTAPVT 60
           MAAA T+  SSP LLQ SFNPSQTRPHPSI +F+PIVSSKANPSNG FIRSR+F TAPV+
Sbjct: 4   MAAAYTVIFSSPTLLQHSFNPSQTRPHPSITSFKPIVSSKANPSNGVFIRSRNFCTAPVS 63

Query: 61  RENRNKVLTVSRLVDGNSGGDDESAQRNSDTGAAIDIKLPRRSLL----CAGCLKYHKLV 119
           RE R KVLTVS LVDG +G DDE +QRNSDTGAAIDIKLPRRSL+    C  C +  K +
Sbjct: 64  RERRYKVLTVSSLVDGYTGDDDEPSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKRL 123

[Close]

BLAST of Cp4.1LG01g13390 vs. NCBI nr
Match: gi|659091397|ref|XP_008446528.1| (PREDICTED: uncharacterized protein LOC103489232 isoform X1 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-34
Identity = 85/122 (69.67%), Postives = 95/122 (77.87%), Query Frame = 1


Query: 1   MAAAKTLCSSSPALLQQSFNPSQTRPHPSIKAFRPIVSSKANPSNGFFIRSRSFRTAPVT 60
           MAAAKT+  SSP LL   FNPSQT PHPSI +F+PI+SSKANPSNG FIRSR+F TAPVT
Sbjct: 1   MAAAKTVIFSSPTLLHHCFNPSQTPPHPSINSFKPILSSKANPSNGVFIRSRNFCTAPVT 60

Query: 61  RENRNKVLTVSRLVDGNSGGDDESAQRNSDTGAAIDIKLPRRSLL----CAGCLKYHKLV 119
           R  R KVLTVS LVDG +G DDES+QRNSDTGAAIDIKLPRRSL+    C  C +  K +
Sbjct: 61  RGRRYKVLTVSSLVDGYTGDDDESSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKRL 120

[Close]

BLAST of Cp4.1LG01g13390 vs. NCBI nr
Match: gi|659091401|ref|XP_008446530.1| (PREDICTED: uncharacterized protein LOC103489232 isoform X3 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 3.9e-32
Identity = 83/122 (68.03%), Postives = 93/122 (76.23%), Query Frame = 1


Query: 1   MAAAKTLCSSSPALLQQSFNPSQTRPHPSIKAFRPIVSSKANPSNGFFIRSRSFRTAPVT 60
           MAAAKT+  SSP LL   FNPSQT PHPSI +F+PI+SSKANPSNG FIR+  F TAPVT
Sbjct: 1   MAAAKTVIFSSPTLLHHCFNPSQTPPHPSINSFKPILSSKANPSNGVFIRN--FCTAPVT 60

Query: 61  RENRNKVLTVSRLVDGNSGGDDESAQRNSDTGAAIDIKLPRRSLL----CAGCLKYHKLV 119
           R  R KVLTVS LVDG +G DDES+QRNSDTGAAIDIKLPRRSL+    C  C +  K +
Sbjct: 61  RGRRYKVLTVSSLVDGYTGDDDESSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKRL 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g13390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g13390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR03_CUCSA	1.3e-50	67.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608180 PE=4 SV=1	[more]
M5XGY6_PRUPE	1.0e-15	40.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012145mg PE=4 SV=1	[more]
W9R2L6_9ROSA	1.4e-12	35.20	DNL-type zinc finger protein OS=Morus notabilis GN=L484_025823 PE=4 SV=1	[more]
B9HWP4_POPTR	1.8e-12	37.93	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s14240g PE=4 SV=2	[more]
V4KB89_EUTSA	6.9e-12	38.24	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10019239mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g13390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68730.1	6.2e-12	35.29	Zim17-type zinc finger protein	[more]

BLAST of Cp4.1LG01g13390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434682\|ref\|XP_004135125.1\|	1.8e-50	67.06	PREDICTED: uncharacterized protein C24H6.02c isoform X2 [Cucumis sativus]	[more]
gi\|659091399\|ref\|XP_008446529.1\|	2.0e-49	65.88	PREDICTED: uncharacterized protein C24H6.02c isoform X2 [Cucumis melo]	[more]
gi\|778705830\|ref\|XP_011655750.1\|	9.9e-36	71.31	PREDICTED: uncharacterized protein LOC101206910 isoform X1 [Cucumis sativus]	[more]
gi\|659091397\|ref\|XP_008446528.1\|	1.4e-34	69.67	PREDICTED: uncharacterized protein LOC103489232 isoform X1 [Cucumis melo]	[more]
gi\|659091401\|ref\|XP_008446530.1\|	3.9e-32	68.03	PREDICTED: uncharacterized protein LOC103489232 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024158	Mt_import_TIM15

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g13390.1	Cp4.1LG01g13390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024158	Mitochondrial import protein TIM15	PANTHER	PTHR20922	UNCHARACTERIZED	coord: 1..135 score: 3.3
None	No IPR available	PANTHER	PTHR20922:SF17	F24J5.3	coord: 1..135 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g13390	Cucsa.284080	Cucumber (Gy14) v1	cgycpeB0750
Cp4.1LG01g13390	CmaCh04G015520	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g13390	CmoCh04G016220	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g13390	Csa5G608180	Cucumber (Chinese Long) v2	cpecuB442
Cp4.1LG01g13390	MELO3C012198	Melon (DHL92) v3.5.1	cpemeB363
Cp4.1LG01g13390	ClCG05G023200	Watermelon (Charleston Gray)	cpewcgB388
Cp4.1LG01g13390	CSPI05G24790	Wild cucumber (PI 183967)	cpecpiB442
Cp4.1LG01g13390	Lsi04G003060	Bottle gourd (USVL1VR-Ls)	cpelsiB352
Cp4.1LG01g13390	MELO3C012198.2	Melon (DHL92) v3.6.1	cpemedB423
Cp4.1LG01g13390	CsaV3_5G033810	Cucumber (Chinese Long) v3	cpecucB0546
Cp4.1LG01g13390	Bhi07G001156	Wax gourd	cpewgoB0557
Cp4.1LG01g13390	CsGy5G024290	Cucumber (Gy14) v2	cgybcpeB648
Cp4.1LG01g13390	Carg01799	Silver-seed gourd	carcpeB1177

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g13390	Cucumber (Chinese Long) v3	cpecucB0474
Cp4.1LG01g13390	Cucurbita pepo (Zucchini)	cpecpeB040
Cp4.1LG01g13390	Cucurbita pepo (Zucchini)	cpecpeB348
Cp4.1LG01g13390	Cucurbita pepo (Zucchini)	cpecpeB399
Cp4.1LG01g13390	Cucurbita maxima (Rimu)	cmacpeB316
Cp4.1LG01g13390	Cucurbita maxima (Rimu)	cmacpeB429
Cp4.1LG01g13390	Cucurbita moschata (Rifu)	cmocpeB115
Cp4.1LG01g13390	Cucurbita moschata (Rifu)	cmocpeB392
Cp4.1LG01g13390	Wild cucumber (PI 183967)	cpecpiB381
Cp4.1LG01g13390	Cucumber (Chinese Long) v2	cpecuB381
Cp4.1LG01g13390	Bottle gourd (USVL1VR-Ls)	cpelsiB371
Cp4.1LG01g13390	Watermelon (Charleston Gray)	cpewcgB401
Cp4.1LG01g13390	Watermelon (97103) v1	cpewmB427
Cp4.1LG01g13390	Watermelon (97103) v1	cpewmB470
Cp4.1LG01g13390	Melon (DHL92) v3.5.1	cpemeB395
Cp4.1LG01g13390	Cucumber (Gy14) v2	cgybcpeB063
Cp4.1LG01g13390	Melon (DHL92) v3.6.1	cpemedB458
Cp4.1LG01g13390	Silver-seed gourd	carcpeB1451