ClCG05G023200 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G023200
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Zim17-type zinc finger protein LENGTH=170
Location	CG_Chr05 : 35056347 .. 35057517 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACGAAGTGTCGTTGGTTAATTGGAGGGTGCAGGAAAACGACATGTCGGCTTTCTAGAGTATGAAAAAAGCACCACTCCCGGAGCGAAGCTTACTGTAGAAGCGACAACGGCATCCATGGCCGCGGCAAAGACTGTATTCTTCTCCTCTCCCGCGCTTCTTCACCAGTCCAACTCTTTCGAGACTCGGCCGCTTCCATCCATCAACTCATTCAAACCTATAGTCTTCTTTTCGAAAGCAAACCCTAGCAATGGTGTCTTCATTAGGTGAATAATCAATTATTCTTTTCGTTATCTTCAATTTGAGACTTCTTTATTATTCCTTTCATCTTTTTACACGAGAAAATTGAGCGTTTCTTTTCCAGAAGTAGAAACTTCTATACAGCACCAGTTCTTCGAGAACGCAGATATAAGGTGCTTGCGGTTTCTAGATTGGTGGATGGTTATCCTGGAGACGACGATGAATCTGCACAGAGAAATTCAGATATGGTATGAGTTCGGTAATGAATCTTGAACTGAGCTAGAGATTCTTGAACTTATGGCTTGTGTTTATCTTTCTTCAATTTGCAGGGGGCAGCCGTTGACATAAAGCTTCCAAGAAGAAGTTTGATGATAACGTTTACTTGTAACCTATGTAGTGAGAGGACGAAGAGGCTCATCAATCGATTAGCTTACGAACGGGGGCTTGTTTTTGTTCAGGTACACCATTATATATGGATGTTCTAATGTGTTGCAAAATCTCAATGCTACTATCGATTTTGGAGTTCTATCAAAGCATTTGATAAGATGAACCATTTTGCATTAGCAGTTCTAGTAAGCATTGTTCTTTCTTTCGCTTCAAAGGAATGTGTGGATTTGTTCTGACTGAAATTGTTGCAATACTATGTAATTATACTCTGAAACCCCAAGCTTCTGCAAACTTTTTTCGAGTTTAAGTATACACCATTCTTTTTTATTGGACTGCTGTAAGTTGAAACCCCAATTTCTACAACTCGTGAAGGATGGATAACTGATTGTGCGTGGTTTTTTTATTTTTTATTTTTTATTTTTTCCTTCCTTTTTGCTACAATTCAAAAACATTCTTAGAAGGTTAGTATTCATATTTCTACTTGTATGTCTAGAATTTGAGGGAAGATATTTCCTGCTTGTCTCTTGCCCTCTCTGGCTCTCTT

mRNA sequence

GGACGAAGTGTCGTTGGTTAATTGGAGGGTGCAGGAAAACGACATGTCGGCTTTCTAGAGTATGAAAAAAGCACCACTCCCGGAGCGAAGCTTACTGTAGAAGCGACAACGGCATCCATGGCCGCGGCAAAGACTGTATTCTTCTCCTCTCCCGCGCTTCTTCACCAGTCCAACTCTTTCGAGACTCGGCCGCTTCCATCCATCAACTCATTCAAACCTATAGTCTTCTTTTCGAAAGCAAACCCTAGCAATGGTGTCTTCATTAGAAGTAGAAACTTCTATACAGCACCAGTTCTTCGAGAACGCAGATATAAGGTGCTTGCGGTTTCTAGATTGGTGGATGGTTATCCTGGAGACGACGATGAATCTGCACAGAGAAATTCAGATATGGGGGCAGCCGTTGACATAAAGCTTCCAAGAAGAAGTTTGATGATAACGTTTACTTGTAACCTATGTAGTGAGAGGACGAAGAGGCTCATCAATCGATTAGCTTACGAACGGGGGCTTGTTTTTGTTCAGAATTTGAGGGAAGATATTTCCTGCTTGTCTCTTGCCCTCTCTGGCTCTCTT

Coding sequence (CDS)

ATGGCCGCGGCAAAGACTGTATTCTTCTCCTCTCCCGCGCTTCTTCACCAGTCCAACTCTTTCGAGACTCGGCCGCTTCCATCCATCAACTCATTCAAACCTATAGTCTTCTTTTCGAAAGCAAACCCTAGCAATGGTGTCTTCATTAGAAGTAGAAACTTCTATACAGCACCAGTTCTTCGAGAACGCAGATATAAGGTGCTTGCGGTTTCTAGATTGGTGGATGGTTATCCTGGAGACGACGATGAATCTGCACAGAGAAATTCAGATATGGGGGCAGCCGTTGACATAAAGCTTCCAAGAAGAAGTTTGATGATAACGTTTACTTGTAACCTATGTAGTGAGAGGACGAAGAGGCTCATCAATCGATTAGCTTACGAACGGGGGCTTGTTTTTGTTCAGAATTTGAGGGAAGATATTTCCTGCTTGTCTCTTGCCCTCTCTGGCTCTCTT

Protein sequence

MAAAKTVFFSSPALLHQSNSFETRPLPSINSFKPIVFFSKANPSNGVFIRSRNFYTAPVLRERRYKVLAVSRLVDGYPGDDDESAQRNSDMGAAVDIKLPRRSLMITFTCNLCSERTKRLINRLAYERGLVFVQNLREDISCLSLALSGSL

Homology

[Close]

BLAST of ClCG05G023200 vs. TrEMBL
Match: A0A0A0KR03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608180 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.6e-51
Identity = 111/135 (82.22%), Postives = 115/135 (85.19%), Query Frame = 1


Query: 1   MAAAKTVFFSSPALL-HQSNSFETRPLPSINSFKPIVFFSKANPSNGVFIRSRNFYTAPV 60
           MAAA TV FSSP LL H  N  +TRP PSI SFKPIV  SKANPSNGVFIRSRNF TAPV
Sbjct: 4   MAAAYTVIFSSPTLLQHSFNPSQTRPHPSITSFKPIVS-SKANPSNGVFIRSRNFCTAPV 63

Query: 61  LRERRYKVLAVSRLVDGYPGDDDESAQRNSDMGAAVDIKLPRRSLMITFTCNLCSERTKR 120
            RERRYKVL VS LVDGY GDDDE +QRNSD GAA+DIKLPRRSLM+TFTCN CSERTKR
Sbjct: 64  SRERRYKVLTVSSLVDGYTGDDDEPSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKR 123

Query: 121 LINRLAYERGLVFVQ 135
           LINRLAYERGLVFVQ
Sbjct: 124 LINRLAYERGLVFVQ 137

[Close]

BLAST of ClCG05G023200 vs. TrEMBL
Match: M5XGY6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012145mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-18
Identity = 67/154 (43.51%), Postives = 85/154 (55.19%), Query Frame = 1


Query: 1   MAAAKTVFFSSPALLHQSNSFETRPLPSINSFKPIVFF-----------SKANPSNGVF- 60
           MAA  T +  SPAL   S+       P  NS KPI              +K NP  G+  
Sbjct: 1   MAATLTAWSLSPALPSLSS-------PITNSHKPIKALLHPNFLRPFSSTKTNPVIGLSR 60

Query: 61  --------IRSRNFYTAPVLRERRYKVLAVSRLVDGYPGDDDESAQRNSDMGAAVDIKLP 120
                   + SR  YTA V  +R YKVLAVS L++G    D E  +   +  A +DI+LP
Sbjct: 61  SLTQVQNPLCSRISYTAAVAPKRAYKVLAVSGLLNGNFETDGELERNIPNTDATIDIQLP 120

Query: 121 RRSLMITFTCNLCSERTKRLINRLAYERGLVFVQ 135
           RRSL++ FTC+LC ERT RL+NRLAYERGL++VQ
Sbjct: 121 RRSLLVKFTCDLCGERTDRLVNRLAYERGLIYVQ 147

[Close]

BLAST of ClCG05G023200 vs. TrEMBL
Match: A0A067FRZ1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031397mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.4e-17
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 1


Query: 3   AAKTVFFSSPALLHQSNSFETRPLPSINSFKPIVFFSKANPSNGVFIRSRNFYTAPVLRE 62
           AA T   SSP++   S       +   NSFKPI F + A P N +  R R      V+ E
Sbjct: 2   AAITACNSSPSVSSLSTHKPLDVILRPNSFKPISFSNSATP-NLIRPRLRVSGAKAVVPE 61

Query: 63  RRYKVLAVSRLVDGYPGDDDESAQRNSDMGAAVDIKLPRRSLMITFTCNLCSERTKRLIN 122
           R Y++LAVS         + E+   +S+  A +DIKLPRRSL++ FTC+ C ERT+RLIN
Sbjct: 62  RAYRILAVSE-------SNSEAELSDSNKDATIDIKLPRRSLLVQFTCDGCGERTQRLIN 121

Query: 123 RLAYERGLVFVQ 135
           RLAYERGLV+VQ
Sbjct: 122 RLAYERGLVYVQ 125

[Close]

BLAST of ClCG05G023200 vs. TrEMBL
Match: V4THA3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032948mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.4e-17
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 1


Query: 3   AAKTVFFSSPALLHQSNSFETRPLPSINSFKPIVFFSKANPSNGVFIRSRNFYTAPVLRE 62
           AA T   SSP++   S       +   NSFKPI F + A P N +  R R      V+ E
Sbjct: 2   AAITACNSSPSVSSLSTHKPLDVILRPNSFKPISFSNSATP-NLIRPRLRVSGAKAVVPE 61

Query: 63  RRYKVLAVSRLVDGYPGDDDESAQRNSDMGAAVDIKLPRRSLMITFTCNLCSERTKRLIN 122
           R Y++LAVS         + E+   +S+  A +DIKLPRRSL++ FTC+ C ERT+RLIN
Sbjct: 62  RAYRILAVSE-------SNSEAELSDSNKDATIDIKLPRRSLLVQFTCDGCGERTQRLIN 121

Query: 123 RLAYERGLVFVQ 135
           RLAYERGLV+VQ
Sbjct: 122 RLAYERGLVYVQ 125

[Close]

BLAST of ClCG05G023200 vs. TrEMBL
Match: V4VEV7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032948mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.4e-17
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 1


Query: 3   AAKTVFFSSPALLHQSNSFETRPLPSINSFKPIVFFSKANPSNGVFIRSRNFYTAPVLRE 62
           AA T   SSP++   S       +   NSFKPI F + A P N +  R R      V+ E
Sbjct: 2   AAITACNSSPSVSSLSTHKPLDVILRPNSFKPISFSNSATP-NLIRPRLRVSGAKAVVPE 61

Query: 63  RRYKVLAVSRLVDGYPGDDDESAQRNSDMGAAVDIKLPRRSLMITFTCNLCSERTKRLIN 122
           R Y++LAVS         + E+   +S+  A +DIKLPRRSL++ FTC+ C ERT+RLIN
Sbjct: 62  RAYRILAVSE-------SNSEAELSDSNKDATIDIKLPRRSLLVQFTCDGCGERTQRLIN 121

Query: 123 RLAYERGLVFVQ 135
           RLAYERGLV+VQ
Sbjct: 122 RLAYERGLVYVQ 125

[Close]

BLAST of ClCG05G023200 vs. TAIR10
Match: AT1G68730.1 (AT1G68730.1 Zim17-type zinc finger protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.8e-16
Identity = 50/125 (40.00%), Postives = 65/125 (52.00%), Query Frame = 1


Query: 10  SSPALLHQSNSFETRPLPSINSFKPIVFFSKANPSNGVFIRSRNFYTAPVLRERRYKVLA 69
           + P   H S SF   P P      PI    ++  +  + +        P  R R + V  
Sbjct: 21  TKPINFHFSASFYKPPRPFYKQQNPISALHRSKTTRVIEV------VTPKQRNRSFSVFG 80

Query: 70  VSRLVDGYPGDDDESAQRNSDMGAAVDIKLPRRSLMITFTCNLCSERTKRLINRLAYERG 129
              L D    + DE +  ++++ A++DIKLPRRSL + FTCN C ERTKRLINR AYE+G
Sbjct: 81  --SLADDSKLNPDEESNDSAEV-ASIDIKLPRRSLQVEFTCNSCGERTKRLINRHAYEKG 136

Query: 130 LVFVQ 135
           LVFVQ
Sbjct: 141 LVFVQ 136

[Close]

BLAST of ClCG05G023200 vs. TAIR10
Match: AT5G27280.1 (AT5G27280.1 Zim17-type zinc finger protein)

HSP 1 Score: 47.4 bits (111), Expect = 9.3e-06
Identity = 21/37 (56.76%), Postives = 24/37 (64.86%), Query Frame = 1


Query: 98  KLPRRSLMITFTCNLCSERTKRLINRLAYERGLVFVQ 135
           K PRR + + FTCN+C +RT R IN  AY  G VFVQ
Sbjct: 115 KSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQ 151

[Close]

BLAST of ClCG05G023200 vs. NCBI nr
Match: gi|659091397|ref|XP_008446528.1| (PREDICTED: uncharacterized protein LOC103489232 isoform X1 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 1.4e-51
Identity = 111/137 (81.02%), Postives = 117/137 (85.40%), Query Frame = 1


Query: 1   MAAAKTVFFSSPALLHQS-NSFETRPLPSINSFKPIVFFSKANPSNGVFIRSRNFYTAPV 60
           MAAAKTV FSSP LLH   N  +T P PSINSFKPI+  SKANPSNGVFIRSRNF TAPV
Sbjct: 1   MAAAKTVIFSSPTLLHHCFNPSQTPPHPSINSFKPILS-SKANPSNGVFIRSRNFCTAPV 60

Query: 61  LRERRYKVLAVSRLVDGYPGDDDESAQRNSDMGAAVDIKLPRRSLMITFTCNLCSERTKR 120
            R RRYKVL VS LVDGY GDDDES+QRNSD GAA+DIKLPRRSLM+TFTCN CSERTKR
Sbjct: 61  TRGRRYKVLTVSSLVDGYTGDDDESSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKR 120

Query: 121 LINRLAYERGLVFVQNL 137
           LINRLAYERGLVFVQ +
Sbjct: 121 LINRLAYERGLVFVQRI 136

[Close]

BLAST of ClCG05G023200 vs. NCBI nr
Match: gi|659091399|ref|XP_008446529.1| (PREDICTED: uncharacterized protein C24H6.02c isoform X2 [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 2.3e-51
Identity = 111/135 (82.22%), Postives = 116/135 (85.93%), Query Frame = 1


Query: 1   MAAAKTVFFSSPALLHQS-NSFETRPLPSINSFKPIVFFSKANPSNGVFIRSRNFYTAPV 60
           MAAAKTV FSSP LLH   N  +T P PSINSFKPI+  SKANPSNGVFIRSRNF TAPV
Sbjct: 1   MAAAKTVIFSSPTLLHHCFNPSQTPPHPSINSFKPILS-SKANPSNGVFIRSRNFCTAPV 60

Query: 61  LRERRYKVLAVSRLVDGYPGDDDESAQRNSDMGAAVDIKLPRRSLMITFTCNLCSERTKR 120
            R RRYKVL VS LVDGY GDDDES+QRNSD GAA+DIKLPRRSLM+TFTCN CSERTKR
Sbjct: 61  TRGRRYKVLTVSSLVDGYTGDDDESSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKR 120

Query: 121 LINRLAYERGLVFVQ 135
           LINRLAYERGLVFVQ
Sbjct: 121 LINRLAYERGLVFVQ 134

[Close]

BLAST of ClCG05G023200 vs. NCBI nr
Match: gi|778705830|ref|XP_011655750.1| (PREDICTED: uncharacterized protein LOC101206910 isoform X1 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 3.1e-51
Identity = 111/137 (81.02%), Postives = 116/137 (84.67%), Query Frame = 1


Query: 1   MAAAKTVFFSSPALL-HQSNSFETRPLPSINSFKPIVFFSKANPSNGVFIRSRNFYTAPV 60
           MAAA TV FSSP LL H  N  +TRP PSI SFKPIV  SKANPSNGVFIRSRNF TAPV
Sbjct: 4   MAAAYTVIFSSPTLLQHSFNPSQTRPHPSITSFKPIVS-SKANPSNGVFIRSRNFCTAPV 63

Query: 61  LRERRYKVLAVSRLVDGYPGDDDESAQRNSDMGAAVDIKLPRRSLMITFTCNLCSERTKR 120
            RERRYKVL VS LVDGY GDDDE +QRNSD GAA+DIKLPRRSLM+TFTCN CSERTKR
Sbjct: 64  SRERRYKVLTVSSLVDGYTGDDDEPSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKR 123

Query: 121 LINRLAYERGLVFVQNL 137
           LINRLAYERGLVFVQ +
Sbjct: 124 LINRLAYERGLVFVQRI 139

[Close]

BLAST of ClCG05G023200 vs. NCBI nr
Match: gi|449434682|ref|XP_004135125.1| (PREDICTED: uncharacterized protein C24H6.02c isoform X2 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 5.2e-51
Identity = 111/135 (82.22%), Postives = 115/135 (85.19%), Query Frame = 1


Query: 1   MAAAKTVFFSSPALL-HQSNSFETRPLPSINSFKPIVFFSKANPSNGVFIRSRNFYTAPV 60
           MAAA TV FSSP LL H  N  +TRP PSI SFKPIV  SKANPSNGVFIRSRNF TAPV
Sbjct: 4   MAAAYTVIFSSPTLLQHSFNPSQTRPHPSITSFKPIVS-SKANPSNGVFIRSRNFCTAPV 63

Query: 61  LRERRYKVLAVSRLVDGYPGDDDESAQRNSDMGAAVDIKLPRRSLMITFTCNLCSERTKR 120
            RERRYKVL VS LVDGY GDDDE +QRNSD GAA+DIKLPRRSLM+TFTCN CSERTKR
Sbjct: 64  SRERRYKVLTVSSLVDGYTGDDDEPSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKR 123

Query: 121 LINRLAYERGLVFVQ 135
           LINRLAYERGLVFVQ
Sbjct: 124 LINRLAYERGLVFVQ 137

[Close]

BLAST of ClCG05G023200 vs. NCBI nr
Match: gi|659091401|ref|XP_008446530.1| (PREDICTED: uncharacterized protein LOC103489232 isoform X3 [Cucumis melo])

HSP 1 Score: 202.6 bits (514), Expect = 4.9e-49
Identity = 109/137 (79.56%), Postives = 115/137 (83.94%), Query Frame = 1


Query: 1   MAAAKTVFFSSPALLHQS-NSFETRPLPSINSFKPIVFFSKANPSNGVFIRSRNFYTAPV 60
           MAAAKTV FSSP LLH   N  +T P PSINSFKPI+  SKANPSNGVFIR  NF TAPV
Sbjct: 1   MAAAKTVIFSSPTLLHHCFNPSQTPPHPSINSFKPILS-SKANPSNGVFIR--NFCTAPV 60

Query: 61  LRERRYKVLAVSRLVDGYPGDDDESAQRNSDMGAAVDIKLPRRSLMITFTCNLCSERTKR 120
            R RRYKVL VS LVDGY GDDDES+QRNSD GAA+DIKLPRRSLM+TFTCN CSERTKR
Sbjct: 61  TRGRRYKVLTVSSLVDGYTGDDDESSQRNSDTGAAIDIKLPRRSLMVTFTCNQCSERTKR 120

Query: 121 LINRLAYERGLVFVQNL 137
           LINRLAYERGLVFVQ +
Sbjct: 121 LINRLAYERGLVFVQRI 134

The following BLAST results are available for this feature:

BLAST of ClCG05G023200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR03_CUCSA	3.6e-51	82.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608180 PE=4 SV=1	[more]
M5XGY6_PRUPE	3.1e-18	43.51	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012145mg PE=4 SV=1	[more]
A0A067FRZ1_CITSI	3.4e-17	46.21	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031397mg PE=4 SV=1	[more]
V4THA3_9ROSI	3.4e-17	46.21	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032948mg PE=4 SV=1	[more]
V4VEV7_9ROSI	3.4e-17	46.21	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032948mg PE=4 SV=1	[more]

BLAST of ClCG05G023200 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68730.1	5.8e-16	40.00	Zim17-type zinc finger protein	[more]
AT5G27280.1	9.3e-06	56.76	Zim17-type zinc finger protein	[more]

BLAST of ClCG05G023200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091397\|ref\|XP_008446528.1\|	1.4e-51	81.02	PREDICTED: uncharacterized protein LOC103489232 isoform X1 [Cucumis melo]	[more]
gi\|659091399\|ref\|XP_008446529.1\|	2.3e-51	82.22	PREDICTED: uncharacterized protein C24H6.02c isoform X2 [Cucumis melo]	[more]
gi\|778705830\|ref\|XP_011655750.1\|	3.1e-51	81.02	PREDICTED: uncharacterized protein LOC101206910 isoform X1 [Cucumis sativus]	[more]
gi\|449434682\|ref\|XP_004135125.1\|	5.2e-51	82.22	PREDICTED: uncharacterized protein C24H6.02c isoform X2 [Cucumis sativus]	[more]
gi\|659091401\|ref\|XP_008446530.1\|	4.9e-49	79.56	PREDICTED: uncharacterized protein LOC103489232 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007853	Znf_DNL-typ
IPR024158	Mt_import_TIM15

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G023200.1	ClCG05G023200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007853	Zinc finger, DNL-type	PFAM	PF05180	zf-DNL	coord: 105..134 score: 2.
IPR007853	Zinc finger, DNL-type	PROFILE	PS51501	ZF_DNL	coord: 99..151 score: 9
IPR024158	Mitochondrial import protein TIM15	PANTHER	PTHR20922	UNCHARACTERIZED	coord: 26..134 score: 1.1
None	No IPR available	PANTHER	PTHR20922:SF17	F24J5.3	coord: 26..134 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G023200	Csa5G608180	Cucumber (Chinese Long) v2	cuwcgB394
ClCG05G023200	MELO3C012198	Melon (DHL92) v3.5.1	mewcgB062
ClCG05G023200	Cla97C05G105100	Watermelon (97103) v2	wcgwmbB229
ClCG05G023200	Bhi07G001156	Wax gourd	wcgwgoB467
ClCG05G023200	CSPI05G24790	Wild cucumber (PI 183967)	cpiwcgB412
ClCG05G023200	Cucsa.284080	Cucumber (Gy14) v1	cgywcgB498
ClCG05G023200	CmaCh04G015520	Cucurbita maxima (Rimu)	cmawcgB655
ClCG05G023200	CmoCh04G016220	Cucurbita moschata (Rifu)	cmowcgB654
ClCG05G023200	Lsi04G003060	Bottle gourd (USVL1VR-Ls)	lsiwcgB283
ClCG05G023200	Cp4.1LG01g13390	Cucurbita pepo (Zucchini)	cpewcgB388
ClCG05G023200	CsGy5G024290	Cucumber (Gy14) v2	cgybwcgB359
ClCG05G023200	MELO3C012198.2	Melon (DHL92) v3.6.1	medwcgB061
ClCG05G023200	Carg01799	Silver-seed gourd	carwcgB0816
ClCG05G023200	CsaV3_5G033810	Cucumber (Chinese Long) v3	cucwcgB415

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G023200	Cucumber (Gy14) v2	cgybwcgB363
ClCG05G023200	Melon (DHL92) v3.6.1	medwcgB241
ClCG05G023200	Silver-seed gourd	carwcgB0580
ClCG05G023200	Silver-seed gourd	carwcgB1016
ClCG05G023200	Cucumber (Chinese Long) v3	cucwcgB069
ClCG05G023200	Watermelon (97103) v2	wcgwmbB228
ClCG05G023200	Watermelon (97103) v2	wcgwmbB233
ClCG05G023200	Watermelon (Charleston Gray)	wcgwcgB070
ClCG05G023200	Watermelon (Charleston Gray)	wcgwcgB155
ClCG05G023200	Cucurbita maxima (Rimu)	cmawcgB124
ClCG05G023200	Cucurbita maxima (Rimu)	cmawcgB364
ClCG05G023200	Cucurbita moschata (Rifu)	cmowcgB358
ClCG05G023200	Wild cucumber (PI 183967)	cpiwcgB065
ClCG05G023200	Cucumber (Chinese Long) v2	cuwcgB064
ClCG05G023200	Melon (DHL92) v3.5.1	mewcgB157
ClCG05G023200	Melon (DHL92) v3.5.1	mewcgB249
ClCG05G023200	Watermelon (97103) v1	wcgwmB285
ClCG05G023200	Watermelon (97103) v1	wcgwmB304
ClCG05G023200	Watermelon (97103) v1	wcgwmB308
ClCG05G023200	Cucurbita pepo (Zucchini)	cpewcgB045
ClCG05G023200	Bottle gourd (USVL1VR-Ls)	lsiwcgB245
ClCG05G023200	Bottle gourd (USVL1VR-Ls)	lsiwcgB367