Cp4.1LG01g06000 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g06000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA recognition motif containing protein
Location	Cp4.1LG01 : 415871 .. 419157 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGTCAAACCTGAAATTGTGTCGCTCTTACTGAACAAACAAAAATGAAAAAACTTCGCAAACAAATCGTATCCATTTCCAGAACCGAACTACCCAAAAAAACTAAATCCAAATCCAAATCCAAAAATCACTTCCCCTTCCTCGCAACAATTTATTATCTTCTCTTCGCGCCTTCATCTCATCATCTTCCGCCATAGCTAATTCCCTCTCCAACCTTTCTTTTGCCGCGCACAAATGTCGGTGAGTTCATCATCTTCTTTTTGTCTGTCAATCTTTGATGCAGATCTGCCGCATTCGCGTTTGCTAATTTGTTTTTCCTCATTGTGAATGGTTGTGATGGTGATTTAGGGATTTGTGATTGTAATGTGGAATATGGTTTATGATTTTGATTTTTCAAGATCTCTGTTTCTGTATTCTCTTGTTCCTACAGTTTGTGAGAAGATTTCTACTGCTGTTGATGCATTCGTTCTTCTTTCGTACATTTTTCTCGCTCGATTTGCTTCTTATTGGAATTTGGAATTTGGAATTTATCGAGAAAAGGTTTAGATTCTCATTCTATCCATAATTCATGAACAGTCTCTTCGTCTATTCCTCCTCCTCAAATCAGCTCAGCTGTATATCCCAATTCCCAACTTCTTTTTCCTTCCTATTTTGATTTCTCTTTGAAATGTTGAACTGAATGGAAGTGAGAATTACTAATGGTTAACTCACTGCTAAACCCAATTTTTTGTTCTTAATTTTCTTTTTCTGAAATCAGCTACTTGAATCTAATCCTTGTTCTTTCACTTTGATGATGAACTGAATGGAGTGGAAGTTATAAACTGTTGAATTATCTCTAAACCCAAAAGCTTAAATTTGTTTTATACATTTTCTTAGGATGTGAATTGAGTATTAATTTGACTCGAGAATTATCAGTGTTCATGGAGGAAGAAATAACATTGTAAAACTTCAAATGCAGAGGTTTAGGCTTGAACATCAATCTTAGATTGATTGATGTCGAAAATTTAATCTTTTATACATATACATATTCTTAACACGAACACTTGCATTTCTTCATTGTTTTTAAAATCCGATGCAGATGAGAACTGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATCGAAGAGTTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGGTNCAATTATTATCTAAGCTTTAAAAAGTGAACATTCATCAGACAAACATGAATTTTGACTTTGTTTGTAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATCCTTTTGACAGTATGTTCCTTTATGAACTTTGATCTTTTTTTTTTTTAATTTATAATTATGTTTTTAACTTTTTTTTCCCCTTCCTCTTTGGATATCTCAGGGAGCAAAAATTGGTGATCTATCTGTAACAATTGGTCTGGTTGAGAATTATCATCTTCCCCCAGACGCAATGTCATCAATCCTGGTAATTCTGCCTTGTTTATCATTATCAAATGTCTTGTGTGTATGCATTGTCGATGCTCGAGTTTATGCACGTAAGCGAATTACGTGTTTTGGTCATTGCGAGTTCTTGAAATCATTTGGTTCAAAGTTCTTCATGCTATTATCAGCTTCTTCAGCTGTTTGAAAAGGTTTTGAATTCTTGAGGATCTTAGGGAAATCAAGTAGCTGTTTTTGTCTAGAAAGAGGGCTTTCAGACTACTTACACTGTCTTAAATGTAATGATCTTTTGAAGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACAATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAATAAGGCAAAAGCGTTCGATGAACGACACCAGTTGACATCGAATGCTTCTGCGACCGTCACGTCCATAGATCGCAAGATGGGCATAACGGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCCGCTCTCGCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAATAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAAGCTGCTGAGGAAGTGACTCAGATGACCAAGGCGAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATACCGCGAAAGAACTGGGATCATCAACAACTTCGCCGAGCTCCATCTCGACGAGCCATTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAAACAGTAAGTTGTGCATCATATTCATGAAAGCAGAAATCCTACACTTGTGAATTACTTTGCTTACTCATTTTGCTGTATGATATACATTTCATCTAGATGTTGAAATGTTGCGACATTCTTTTGGGTACAAAAAAATTACTTTTTGGATACTTGATTGTATACCGTTTCACTTAACTAATGTAATTTGTAATTTACAAATATAGATTATTGTCTCGTTTTCTTTTACCGTTTCTTTTGATTTTAGGGTAATATGAATTGGCATATTTGCAAACGTAGAACATAAATTGATTTGTGAAGAATATCAGTACTTTTGTTGTCTATTTCATCTCATCTCAGATTTTTCTGTAATAAGCAATAAGCCAACTAAAGCTTCTAAAACACAAACAAACCTAATAAGATGGCAAAACTAGCAGAGTTTAAGTATGCTTAGCAGTGACATCTAAACTTGATCGTAATCATTTACATTTTAAAGCCAATCACTTGGGTACTAAAAATCTCATCGTACCGAGTCATATCTCTGAGTATCAAACGCATACAAGTTGTAATTCAACACTAAATACAAACGATATTGATGAATTATTGAAGCATGTAGATGAAATTCAAATGCTAATTGGTATGAACTTGAGTAGGTCTTAATATGATTCTCGTATAAAAATTTGAGAAAAACTTATCGGACCTTTAGGCCAAAGAGGATTTTTGGCAATCCATCATATACTTTTCATTCTATTGGTGAAAGAATAGAATCGAATGTAGATCTAATTTCTGTCAGGATATGATGCTTGCATCATACAAACTTCAATAGCCACTCCAAGCTCTGTTAAATTTAATACAGCATCAGTAACTTTTGCTCATGTTGACTTAAAAGTGAATCTATGGAATCAAGTTCAATGCAATAATATAGTTTTTTTTTTTTTTTTTAAAGTTCTTGCAAATCCTGTCTAGTTGA

mRNA sequence

CAAGTCAAACCTGAAATTGTGTCGCTCTTACTGAACAAACAAAAATGAAAAAACTTCGCAAACAAATCGTATCCATTTCCAGAACCGAACTACCCAAAAAAACTAAATCCAAATCCAAATCCAAAAATCACTTCCCCTTCCTCGCAACAATTTATTATCTTCTCTTCGCGCCTTCATCTCATCATCTTCCGCCATAGCTAATTCCCTCTCCAACCTTTCTTTTGCCGCGCACAAATGTCGATGAGAACTGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATCGAAGAGTTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATCCTTTTGACAGGAGCAAAAATTGGTGATCTATCTGTAACAATTGGTCTGGTTGAGAATTATCATCTTCCCCCAGACGCAATGTCATCAATCCTGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACAATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAATAAGGCAAAAGCGTTCGATGAACGACACCAGTTGACATCGAATGCTTCTGCGACCGTCACGTCCATAGATCGCAAGATGGGCATAACGGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCCGCTCTCGCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAATAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAAGCTGCTGAGGAAGTGACTCAGATGACCAAGGCGAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATACCGCGAAAGAACTGGGATCATCAACAACTTCGCCGAGCTCCATCTCGACGAGCCATTACCAGGGGAGCCTGCTATTGTTCCATTCTTGCAAATCCTGTCTAGTTGA

Coding sequence (CDS)

ATGTCGATGAGAACTGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATCGAAGAGTTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATCCTTTTGACAGGAGCAAAAATTGGTGATCTATCTGTAACAATTGGTCTGGTTGAGAATTATCATCTTCCCCCAGACGCAATGTCATCAATCCTGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACAATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAATAAGGCAAAAGCGTTCGATGAACGACACCAGTTGACATCGAATGCTTCTGCGACCGTCACGTCCATAGATCGCAAGATGGGCATAACGGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCCGCTCTCGCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAATAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAAGCTGCTGAGGAAGTGACTCAGATGACCAAGGCGAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATACCGCGAAAGAACTGGGATCATCAACAACTTCGCCGAGCTCCATCTCGACGAGCCATTACCAGGGGAGCCTGCTATTGTTCCATTCTTGCAAATCCTGTCTAGTTGA

Protein sequence

MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPFLQILSS

Homology

[Close]

BLAST of Cp4.1LG01g06000 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.9e-57
Identity = 128/260 (49.23%), Postives = 179/260 (68.85%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +R+VKV N+S   +E DI+EFFSFSGE+  +++Q    N   AYVT+K++QGA+TA+LL+
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ---SNEHSAYVTFKETQGAETAVLLS 64

Query: 63  GAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I D SV I L  NY  PP A  +  + + +   +   +AEDVVS+MLAKGFILGKDA
Sbjct: 65  GASIADQSVIIELAPNYS-PPAAPHA--ETQSSGAESVVQKAEDVVSSMLAKGFILGKDA 124

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           V KAKAFDE+H  TS A+A V S+D+K+G+++K+TAGT++VNEK++ +D+ FQV+E+TKS
Sbjct: 125 VGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTERTKS 184

Query: 183 ALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
             A AEQ  SSAG+A+M N YV TG +W + A   V +AA EV Q TK   EK E E+  
Sbjct: 185 VYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK---EKVEAEQPS 244

Query: 243 SIYRERTGIINNFAELHLDE 263
              + +  +   ++ +H  E
Sbjct: 245 QPAQSQQQLPEGYSPIHSSE 255

[Close]

BLAST of Cp4.1LG01g06000 vs. Swiss-Prot
Match: VIPI_SCHPO (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-07
Identity = 57/217 (26.27%), Postives = 98/217 (45.16%), Query Frame = 1


Query: 6   VKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAK 65
           V V+NIS   +E+ I +FFSF G++  +  ++  E TQ A + ++      TA+LL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDAL 64

Query: 66  IGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAED-----VVSTMLAKGFILGK 125
           +G   + I          D  ++    +    G+   + ED     ++S +L++G+ L  
Sbjct: 65  LGQNKIQI-------TSEDGGAASTTDQGGAGGDQAARQEDKPRSAIISELLSRGYHLSD 124

Query: 126 DAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVN------EKVREMDEKF 185
             + K+   D+ + ++S          +  GI E   +G   VN      EK  E+D KF
Sbjct: 125 VTLEKSIQLDQSYGVSS----------KFKGILESALSGVRSVNERYHVTEKANEVDNKF 184

Query: 186 QVSEK---TKSALAVAEQKA------SSAGTALMNNY 203
            +S+K   T S ++    KA      +SAG  + N Y
Sbjct: 185 AISDKLNRTSSLVSTYFHKALETAAGTSAGQKVQNAY 203

[Close]

BLAST of Cp4.1LG01g06000 vs. TrEMBL
Match: A0A0A0KIR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G023900 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 6.6e-131
Identity = 256/272 (94.12%), Postives = 263/272 (96.69%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           MSMRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQVAYVTYKDSQGADTAIL
Sbjct: 1   MSMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAIL 60

Query: 61  LTGAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGK 120
           LTGAKIGDLSVTI LVENYHLPP+AMSSILDKRQTVTG APNQAEDVVSTMLAKGFILGK
Sbjct: 61  LTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGK 120

Query: 121 DAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKT 180
           DA+NKAKAFDER QLTSNASATV SIDRKMGITEKITAGTAVVNEKVREMDE FQV EKT
Sbjct: 121 DALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVREKT 180

Query: 181 KSALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEK 240
           KSALAVAEQKA+SAGTALM+NYYV TGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEK
Sbjct: 181 KSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEK 240

Query: 241 KESIYRERTGIINNFAELHLDEPLPGEPAIVP 273
           KESIYRERTGII+NFAELHLDEPLPGEPAIVP
Sbjct: 241 KESIYRERTGIISNFAELHLDEPLPGEPAIVP 272

[Close]

BLAST of Cp4.1LG01g06000 vs. TrEMBL
Match: A0A061E8Q5_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 5.6e-98
Identity = 196/270 (72.59%), Postives = 229/270 (84.81%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+RETEN QVAYVT+KDSQGADTA+LLT
Sbjct: 31  IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLT 90

Query: 63  GAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I DLSV I  VE+Y LPP+A+ S ++ +  VT +   +AEDV+STMLAKGF+LGKDA
Sbjct: 91  GATIVDLSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDA 150

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           +NKAKAFDERH  TSNASA VTSID+KMG++EK++ GTAVVNEK+REM+E FQVSEKTKS
Sbjct: 151 INKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKS 210

Query: 183 ALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
           A AVAEQKASSAGTA+M+N YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEKKE
Sbjct: 211 AFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKE 270

Query: 243 SIYRERTGIINNFAELHLDEPLPGEPAIVP 273
            IYRERTGII++FA+ HLDE    EP IVP
Sbjct: 271 IIYRERTGIISDFAQFHLDESSAAEPTIVP 300

[Close]

BLAST of Cp4.1LG01g06000 vs. TrEMBL
Match: A0A061EAC5_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 5.6e-98
Identity = 196/270 (72.59%), Postives = 229/270 (84.81%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+RETEN QVAYVT+KDSQGADTA+LLT
Sbjct: 2   IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLT 61

Query: 63  GAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I DLSV I  VE+Y LPP+A+ S ++ +  VT +   +AEDV+STMLAKGF+LGKDA
Sbjct: 62  GATIVDLSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDA 121

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           +NKAKAFDERH  TSNASA VTSID+KMG++EK++ GTAVVNEK+REM+E FQVSEKTKS
Sbjct: 122 INKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKS 181

Query: 183 ALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
           A AVAEQKASSAGTA+M+N YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEKKE
Sbjct: 182 AFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKE 241

Query: 243 SIYRERTGIINNFAELHLDEPLPGEPAIVP 273
            IYRERTGII++FA+ HLDE    EP IVP
Sbjct: 242 IIYRERTGIISDFAQFHLDESSAAEPTIVP 271

[Close]

BLAST of Cp4.1LG01g06000 vs. TrEMBL
Match: F6HFB9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g06050 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.6e-95
Identity = 187/272 (68.75%), Postives = 230/272 (84.56%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           MS+RTVKVSNIS A +ERDI+EFFSFSG+I YVEMQRE E TQ+AYVT+K+SQGADTA+L
Sbjct: 1   MSIRTVKVSNISLAVTERDIKEFFSFSGDIQYVEMQREAEKTQLAYVTFKNSQGADTAVL 60

Query: 61  LTGAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGK 120
           LTGA I DLSV+I  V+NY LPP A+    +++   T +A  + EDVVSTMLAKGF+LGK
Sbjct: 61  LTGATIADLSVSITPVDNYQLPPGALPPSPEEKLHTTNSAVKKGEDVVSTMLAKGFVLGK 120

Query: 121 DAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKT 180
           DA+NKAKAFDE+H L SNASATV SIDRKMG++EK++ GTAVVNEKV+EMDE++QV EKT
Sbjct: 121 DAINKAKAFDEQHHLVSNASATVASIDRKMGLSEKLSIGTAVVNEKVKEMDERYQVFEKT 180

Query: 181 KSALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEK 240
           KSALA+AEQKAS AG+A+MNN+YV TGA+W S+A++ VTKAAE+V+ MT+ KV +AEEEK
Sbjct: 181 KSALAIAEQKASIAGSAIMNNHYVATGASWVSSALSMVTKAAEDVSVMTREKVGRAEEEK 240

Query: 241 KESIYRERTGIINNFAELHLDEPLPGEPAIVP 273
           KE IYRE+ G +N +A++HLDE   GEP IVP
Sbjct: 241 KEIIYREKMGFVNEYAQIHLDESPAGEPPIVP 272

[Close]

BLAST of Cp4.1LG01g06000 vs. TrEMBL
Match: A0A0B0P6S3_GOSAR (Protein vip1 OS=Gossypium arboreum GN=F383_06065 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 7.6e-95
Identity = 189/269 (70.26%), Postives = 228/269 (84.76%), Query Frame = 1


Query: 2   SMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILL 61
           ++RTVKVSNIS A SERDI+EFFSFSG+I YVEM+RETEN QVAYVT+KD+QGADTAILL
Sbjct: 30  NIRTVKVSNISLAASERDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDTQGADTAILL 89

Query: 62  TGAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKD 121
           TGAKI DLSV I  VE+Y LPP+A+ S ++K+Q V  +   +AED+VSTMLAKGFILGKD
Sbjct: 90  TGAKIVDLSVNITPVEDYQLPPEALLSNMEKKQVVADSTVQKAEDMVSTMLAKGFILGKD 149

Query: 122 AVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTK 181
           A+NKAKAFDE+H LTSNASA VTS D+K+G++EK++ GTAVVNEK+REMD++FQVSEKTK
Sbjct: 150 AINKAKAFDEQHHLTSNASAAVTSFDQKIGLSEKLSIGTAVVNEKMREMDDRFQVSEKTK 209

Query: 182 SALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKK 241
            AL+VAEQK S AGTA+M+N YV TGA+W SNA TAV +AAE+V  +TK KV KAEEEKK
Sbjct: 210 FALSVAEQKVSIAGTAIMSNSYVSTGASWLSNAFTAVARAAEDVGMLTKEKVGKAEEEKK 269

Query: 242 ESIYRERTGIINNFAELHLDEPLPGEPAI 271
            S+Y+ER  II +FAELHLDE    EP++
Sbjct: 270 GSVYKERARIIEDFAELHLDESPKAEPSV 298

[Close]

BLAST of Cp4.1LG01g06000 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-72
Identity = 150/266 (56.39%), Postives = 193/266 (72.56%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           M+M TVKVSN+S   ++RD++EFFSFSG+ILY+E Q ETE T++AYVT+KD QGA+TA+L
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LTGAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPN----QAEDVVSTMLAKGF 120
           L+GA I D SV + +  +Y L P+A++S+  K    +  A +    +AEDVVS+MLAKGF
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGF 120

Query: 121 ILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQV 180
           ILGKDA+ KAK+ DE+HQLTS ASA V S D+K+G T+KI  GT VV EKVRE+D+K+QV
Sbjct: 121 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQV 180

Query: 181 SEKTKSALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKA 240
           SEKTKSA+A AEQ  S+AG+A+M N YV TGA W + A   V KAAEEV Q  K KV  A
Sbjct: 181 SEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 240

Query: 241 EEEKKESIYRERTGIINNFAELHLDE 263
           EEE K         +++ FA +HL E
Sbjct: 241 EEEDKRK-------VVDEFARVHLSE 259

[Close]

BLAST of Cp4.1LG01g06000 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 267.7 bits (683), Expect = 8.0e-72
Identity = 147/270 (54.44%), Postives = 199/270 (73.70%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           MSM TVKVSN+S   +ERD++EFFSFSG+I Y+E Q E + +++AYVT+KD QGA+TA+L
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LTGAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQ--------AEDVVSTML 120
           LTG+ I D SVT+ +  +Y LPPDA++SI   +++   ++P +        AEDVVS M+
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMI 120

Query: 121 AKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDE 180
           +KGF+LGKDA+ KAK+ DE+HQLTS ASA VTS D+++G TEKI  GT VV+EKV+E+D+
Sbjct: 121 SKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQ 180

Query: 181 KFQVSEKTKSALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAK 240
           KFQV+EKTKSA+A AEQ  S+AG+A+M N YV TGA W + A   V+KAAEEV Q  K K
Sbjct: 181 KFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEK 240

Query: 241 VEKAEEEKKESIYRERTGIINNFAELHLDE 263
           V  AEEE++     E+  +++  A +HL E
Sbjct: 241 VGLAEEEEE-----EKKKVVDEVAIVHLTE 265

[Close]

BLAST of Cp4.1LG01g06000 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-67
Identity = 147/271 (54.24%), Postives = 194/271 (71.59%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           ++TVK+SN+S   S++D++EFFSFSG+I YVEM+ ET+ +QVAYVT+KDSQGA+TA+LLT
Sbjct: 28  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLT 87

Query: 63  GAKIGDLSVTIGLVENYHLPPDAMSSILDKRQ-TVTGNAPNQAEDVVSTMLAKGFILGKD 122
           GA I DL V+I    NY LPP+A++  LD ++ +  G +  +AEDVV+ M+ +G+ LGKD
Sbjct: 88  GAVIADLRVSITPAVNYQLPPEALA--LDSQEHSFNGFSVKKAEDVVNIMVGRGYALGKD 147

Query: 123 AVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTK 182
           A+ KAKAFD+RH L SNASAT+ S+D KMG++EK++ GT VVNEK+R++DE++QV E TK
Sbjct: 148 AMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDERYQVREITK 207

Query: 183 SALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKK 242
           SALA AE+ A SA TALM N YV +GA+WFSNA  AVTKA +E       KVE   E +K
Sbjct: 208 SALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKAVKE-------KVENGGEGRK 267

Query: 243 ESIYRERTGIINNFAELHLDEPLPGEPAIVP 273
           E I               LD   P  PA+VP
Sbjct: 268 EII--------------TLDPSSPKVPAVVP 275

[Close]

BLAST of Cp4.1LG01g06000 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 223.4 bits (568), Expect = 1.7e-58
Identity = 128/260 (49.23%), Postives = 181/260 (69.62%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +R+VKV N+S   +E DI+EFFSFSGE+  +++Q   E++  AYVT+K++QGA+TA+LL+
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I D SV I L  NY  PP A  +  + + +   +   +AEDVVS+MLAKGFILGKDA
Sbjct: 65  GASIADQSVIIELAPNYS-PPAAPHA--ETQSSGAESVVQKAEDVVSSMLAKGFILGKDA 124

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           V KAKAFDE+H  TS A+A V S+D+K+G+++K+TAGT++VNEK++ +D+ FQV+E+TKS
Sbjct: 125 VGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTERTKS 184

Query: 183 ALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
             A AEQ  SSAG+A+M N YV TG +W + A   V +AA EV Q TK   EK E E+  
Sbjct: 185 VYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK---EKVEAEQPS 244

Query: 243 SIYRERTGIINNFAELHLDE 263
              + +  +   ++ +H  E
Sbjct: 245 QPAQSQQQLPEGYSPIHSSE 256

[Close]

BLAST of Cp4.1LG01g06000 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 192.6 bits (488), Expect = 3.3e-49
Identity = 109/250 (43.60%), Postives = 164/250 (65.60%), Query Frame = 1


Query: 4   RTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTG 63
           R+V+V+N+S   +ER+I EFFSFSG+I ++E+Q+E   +++A+VT+ D +  + A+LL+G
Sbjct: 5   RSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLSG 64

Query: 64  AKIGDLSVTIGLVENY--------------HLPPDAMSSILDKRQTVTGNA---PNQAED 123
           A I D  VTI   ENY               +P     S    +  + GN+    ++A+D
Sbjct: 65  ATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKAQD 124

Query: 124 VVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEK 183
           VV+T+LAKG  LG+DAVNKAKAFDE+HQL +NASA V+S D+++G+TEK++ G + VNEK
Sbjct: 125 VVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISAVNEK 184

Query: 184 VREMDEKFQVSEKTKSALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVT 237
           V+ +D+K QVS+KT +A+  AE+K +  G+A+ ++ YV  GAAWFS A + V +  +   
Sbjct: 185 VKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVGQVAG 244

[Close]

BLAST of Cp4.1LG01g06000 vs. NCBI nr
Match: gi|449449026|ref|XP_004142266.1| (PREDICTED: uncharacterized protein LOC101203394 [Cucumis sativus])

HSP 1 Score: 474.9 bits (1221), Expect = 9.4e-131
Identity = 256/272 (94.12%), Postives = 263/272 (96.69%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           MSMRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQVAYVTYKDSQGADTAIL
Sbjct: 1   MSMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAIL 60

Query: 61  LTGAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGK 120
           LTGAKIGDLSVTI LVENYHLPP+AMSSILDKRQTVTG APNQAEDVVSTMLAKGFILGK
Sbjct: 61  LTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGK 120

Query: 121 DAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKT 180
           DA+NKAKAFDER QLTSNASATV SIDRKMGITEKITAGTAVVNEKVREMDE FQV EKT
Sbjct: 121 DALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVREKT 180

Query: 181 KSALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEK 240
           KSALAVAEQKA+SAGTALM+NYYV TGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEK
Sbjct: 181 KSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEK 240

Query: 241 KESIYRERTGIINNFAELHLDEPLPGEPAIVP 273
           KESIYRERTGII+NFAELHLDEPLPGEPAIVP
Sbjct: 241 KESIYRERTGIISNFAELHLDEPLPGEPAIVP 272

[Close]

BLAST of Cp4.1LG01g06000 vs. NCBI nr
Match: gi|659103002|ref|XP_008452423.1| (PREDICTED: protein vip1-like isoform X1 [Cucumis melo])

HSP 1 Score: 474.2 bits (1219), Expect = 1.6e-130
Identity = 255/272 (93.75%), Postives = 263/272 (96.69%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           MSMRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQVAYVTYKDSQGADTAIL
Sbjct: 1   MSMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAIL 60

Query: 61  LTGAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGK 120
           LTGAKIGDLSVTI LVENYHLPP+AMSSILDKRQTVTG APNQAEDVVSTMLAKGFILGK
Sbjct: 61  LTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGK 120

Query: 121 DAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKT 180
           DA+NKAKAFDER Q TSNASATV SIDRKMGITEKITAGTAVVNEKVREMDE FQV+EKT
Sbjct: 121 DALNKAKAFDERLQFTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKT 180

Query: 181 KSALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEK 240
           KSALAVAEQKA+SAGTALM+NYYV TGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEK
Sbjct: 181 KSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEK 240

Query: 241 KESIYRERTGIINNFAELHLDEPLPGEPAIVP 273
           KESIYRERTGII+NFAELHLDEPLPGEPAIVP
Sbjct: 241 KESIYRERTGIISNFAELHLDEPLPGEPAIVP 272

[Close]

BLAST of Cp4.1LG01g06000 vs. NCBI nr
Match: gi|659103004|ref|XP_008452424.1| (PREDICTED: protein vip1-like isoform X2 [Cucumis melo])

HSP 1 Score: 471.1 bits (1211), Expect = 1.4e-129
Identity = 253/270 (93.70%), Postives = 261/270 (96.67%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQVAYVTYKDSQGADTAILLT
Sbjct: 1   MRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAILLT 60

Query: 63  GAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GAKIGDLSVTI LVENYHLPP+AMSSILDKRQTVTG APNQAEDVVSTMLAKGFILGKDA
Sbjct: 61  GAKIGDLSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGKDA 120

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           +NKAKAFDER Q TSNASATV SIDRKMGITEKITAGTAVVNEKVREMDE FQV+EKTKS
Sbjct: 121 LNKAKAFDERLQFTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKS 180

Query: 183 ALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
           ALAVAEQKA+SAGTALM+NYYV TGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKE
Sbjct: 181 ALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKE 240

Query: 243 SIYRERTGIINNFAELHLDEPLPGEPAIVP 273
           SIYRERTGII+NFAELHLDEPLPGEPAIVP
Sbjct: 241 SIYRERTGIISNFAELHLDEPLPGEPAIVP 270

[Close]

BLAST of Cp4.1LG01g06000 vs. NCBI nr
Match: gi|590697687|ref|XP_007045510.1| (RNA-binding family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 365.5 bits (937), Expect = 8.0e-98
Identity = 196/270 (72.59%), Postives = 229/270 (84.81%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+RETEN QVAYVT+KDSQGADTA+LLT
Sbjct: 2   IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLT 61

Query: 63  GAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I DLSV I  VE+Y LPP+A+ S ++ +  VT +   +AEDV+STMLAKGF+LGKDA
Sbjct: 62  GATIVDLSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDA 121

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           +NKAKAFDERH  TSNASA VTSID+KMG++EK++ GTAVVNEK+REM+E FQVSEKTKS
Sbjct: 122 INKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKS 181

Query: 183 ALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
           A AVAEQKASSAGTA+M+N YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEKKE
Sbjct: 182 AFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKE 241

Query: 243 SIYRERTGIINNFAELHLDEPLPGEPAIVP 273
            IYRERTGII++FA+ HLDE    EP IVP
Sbjct: 242 IIYRERTGIISDFAQFHLDESSAAEPTIVP 271

[Close]

BLAST of Cp4.1LG01g06000 vs. NCBI nr
Match: gi|590697684|ref|XP_007045509.1| (RNA-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 365.5 bits (937), Expect = 8.0e-98
Identity = 196/270 (72.59%), Postives = 229/270 (84.81%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+RETEN QVAYVT+KDSQGADTA+LLT
Sbjct: 31  IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLT 90

Query: 63  GAKIGDLSVTIGLVENYHLPPDAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I DLSV I  VE+Y LPP+A+ S ++ +  VT +   +AEDV+STMLAKGF+LGKDA
Sbjct: 91  GATIVDLSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDA 150

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           +NKAKAFDERH  TSNASA VTSID+KMG++EK++ GTAVVNEK+REM+E FQVSEKTKS
Sbjct: 151 INKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKS 210

Query: 183 ALAVAEQKASSAGTALMNNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
           A AVAEQKASSAGTA+M+N YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEKKE
Sbjct: 211 AFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKE 270

Query: 243 SIYRERTGIINNFAELHLDEPLPGEPAIVP 273
            IYRERTGII++FA+ HLDE    EP IVP
Sbjct: 271 IIYRERTGIISDFAQFHLDESSAAEPTIVP 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g06000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BPA1_ARATH	6.9e-57	49.23	Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1	[more]
VIPI_SCHPO	6.5e-07	26.27	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1...	[more]

BLAST of Cp4.1LG01g06000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIR7_CUCSA	6.6e-131	94.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G023900 PE=4 SV=1	[more]
A0A061E8Q5_THECC	5.6e-98	72.59	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1	[more]
A0A061EAC5_THECC	5.6e-98	72.59	RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1	[more]
F6HFB9_VITVI	2.6e-95	68.75	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g06050 PE=4 SV=...	[more]
A0A0B0P6S3_GOSAR	7.6e-95	70.26	Protein vip1 OS=Gossypium arboreum GN=F383_06065 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g06000 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17720.1	1.2e-72	56.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	8.0e-72	54.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G67950.3	3.5e-67	54.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	1.7e-58	49.23	binding partner of acd11 1	[more]
AT5G32450.1	3.3e-49	43.60	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG01g06000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449026\|ref\|XP_004142266.1\|	9.4e-131	94.12	PREDICTED: uncharacterized protein LOC101203394 [Cucumis sativus]	[more]
gi\|659103002\|ref\|XP_008452423.1\|	1.6e-130	93.75	PREDICTED: protein vip1-like isoform X1 [Cucumis melo]	[more]
gi\|659103004\|ref\|XP_008452424.1\|	1.4e-129	93.70	PREDICTED: protein vip1-like isoform X2 [Cucumis melo]	[more]
gi\|590697687\|ref\|XP_007045510.1\|	8.0e-98	72.59	RNA-binding family protein isoform 2 [Theobroma cacao]	[more]
gi\|590697684\|ref\|XP_007045509.1\|	8.0e-98	72.59	RNA-binding family protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0019344	cysteine biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g06000.1	Cp4.1LG01g06000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 7..68 score: 4.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..74 score: 6.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 4..78 score: 11
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 3..73 score: 1.8
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..78 score: 1.76
None	No IPR available	unknown	Coil	Coil	coord: 219..239 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g06000	Cucsa.174100	Cucumber (Gy14) v1	cgycpeB0478
Cp4.1LG01g06000	CmaCh04G000840	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g06000	CmaCh04G010400	Cucurbita maxima (Rimu)	cmacpeB723
Cp4.1LG01g06000	CmoCh04G011100	Cucurbita moschata (Rifu)	cmocpeB675
Cp4.1LG01g06000	CmoCh04G000820	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g06000	Cla002206	Watermelon (97103) v1	cpewmB411
Cp4.1LG01g06000	Csa5G023900	Cucumber (Chinese Long) v2	cpecuB426
Cp4.1LG01g06000	MELO3C016673	Melon (DHL92) v3.5.1	cpemeB430
Cp4.1LG01g06000	ClCG07G005450	Watermelon (Charleston Gray)	cpewcgB410
Cp4.1LG01g06000	CSPI05G00650	Wild cucumber (PI 183967)	cpecpiB423
Cp4.1LG01g06000	Lsi04G009920	Bottle gourd (USVL1VR-Ls)	cpelsiB355
Cp4.1LG01g06000	MELO3C016673.2	Melon (DHL92) v3.6.1	cpemedB503
Cp4.1LG01g06000	CsaV3_5G014500	Cucumber (Chinese Long) v3	cpecucB0528
Cp4.1LG01g06000	CsGy5G010910	Cucumber (Gy14) v2	cgybcpeB636
Cp4.1LG01g06000	Carg00147	Silver-seed gourd	carcpeB0939
Cp4.1LG01g06000	Carg27433	Silver-seed gourd	carcpeB1348

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g06000	Watermelon (Charleston Gray)	cpewcgB371
Cp4.1LG01g06000	Melon (DHL92) v3.5.1	cpemeB361
Cp4.1LG01g06000	Cucumber (Chinese Long) v3	cpecucB0552
Cp4.1LG01g06000	Wax gourd	cpewgoB0492
Cp4.1LG01g06000	Wax gourd	cpewgoB0554
Cp4.1LG01g06000	Cucurbita pepo (Zucchini)	cpecpeB374