CmoCh04G000820 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G000820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-binding family protein isoform 2
LocationCmo_Chr04 : 444778 .. 447026 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGATGAGAACTGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATTGAAGAATTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGGTTAGTGATTCTGTTCTATGTGTTGATTTATTTGAAGAAAAAAAAGCATGTTGAAGAATTTGATTTTGTTTGTAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATTCTTTTGACAGTATGTTCCTTTATGAACTTTGATCTTTTATTATTATTATTTTTTTATAATTATGTTTTTAACGTTTTTTTTTTTTTTTTTTTCCCTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTCCCTTCCTCTTTGGATATCTCAGGGAGCAAAAATTGGTGATCTATCTGTAACAATTGCTCTGGTTGAGAATTATCATCTTCCACCAGAAGCAATGTCATCAATCCTGGTAATTCTGCCTTGTTTATCATTATCAAATGTCTTGTGTGTATGCATTGTCGATGCTCGAGTTTATGCACGTAAGCGAATTACGTGTTTTGGTCATTGCGAGTTCTTGAAATCATTTGGTTCAAAATTCTTCATGCTATTATCAGCTTCTTCAGCTGTTTGAAAAGGTTTTGAATTCTTGAGGATCTTAGTGAAATCAAGTAGCTGTTTTTGTCTAGAAAGAGGGATTTCAGACTACTTACACTTTCTTAAATGTAATGATCTTTTGAAGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACAATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAACAAGGCAAAAGCGTTCGATGAACGGCACCAGTTGACATCGAATGCTTCTGCGACTGTCACGTCCATAGATCGCAAGATGGGCATAACAGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCCGCTCTCGCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAGTAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAGGCTGCTGAGGAAGTGACTCAGATGACCAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATACCGCGAAAGAACTGGGATCATCAACAACTTCGCCGAGCTCCATCTCGACGAGCCATTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAAACAGTAAGTTGTGCATCATATTCATGAAAGCAGAAATCCTACACTTGTGAATTACTTTGCTTACCCATTTTGCTGTATGATATACATTTCATCTAGATGTTGAAATGTTGCGACATTTTTTTGAGTACAAAAAAATTACTTTTTGGATGCTTGATTGTATACCGTTTCACTTAACTAATGTAATTTGTAATTTACAAATATAGATTATTGTCTC

mRNA sequence

ATGCAGATGAGAACTGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATTGAAGAATTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGGTTAGTGATTCTGTTCTATGTGTTGATTTATTTGAAGAAAAAAAAGCATGTTGAAGAATTTGATTTTGTTTGTAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATTCTTTTGACAGGAGCAAAAATTGGTGATCTATCTGTAACAATTGCTCTGGTTGAGAATTATCATCTTCCACCAGAAGCAATGTCATCAATCCTGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACAATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAACAAGGCAAAAGCGTTCGATGAACGGCACCAGTTGACATCGAATGCTTCTGCGACTGTCACGTCCATAGATCGCAAGATGGGCATAACAGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCCGCTCTCGCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAGTAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAGGCTGCTGAGGAAGTGACTCAGATGACCAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATACCGCGAAAGAACTGGGATCATCAACAACTTCGCCGAGCTCCATCTCGACGAGCCATTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAAACAGTAAGTTGTGCATCATATTCATGAAAGCAGAAATCCTACACTTGTGAATTACTTTGCTTACCCATTTTGCTGTATGATATACATTTCATCTAGATGTTGAAATGTTGCGACATTTTTTTGAGTACAAAAAAATTACTTTTTGGATGCTTGATTGTATACCGTTTCACTTAACTAATGTAATTTGTAATTTACAAATATAGATTATTGTCTC

Coding sequence (CDS)

ATGCAGATGAGAACTGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATTGAAGAATTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGGTTAGTGATTCTGTTCTATGTGTTGATTTATTTGAAGAAAAAAAAGCATGTTGAAGAATTTGATTTTGTTTGTAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATTCTTTTGACAGGAGCAAAAATTGGTGATCTATCTGTAACAATTGCTCTGGTTGAGAATTATCATCTTCCACCAGAAGCAATGTCATCAATCCTGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACAATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAACAAGGCAAAAGCGTTCGATGAACGGCACCAGTTGACATCGAATGCTTCTGCGACTGTCACGTCCATAGATCGCAAGATGGGCATAACAGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCCGCTCTCGCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAGTAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAGGCTGCTGAGGAAGTGACTCAGATGACCAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATACCGCGAAAGAACTGGGATCATCAACAACTTCGCCGAGCTCCATCTCGACGAGCCATTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAA
Homology
[Close]
BLAST of CmoCh04G000820 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.0e-54
Identity = 129/286 (45.10%), Postives = 180/286 (62.94%), Query Frame = 1 

Query: 2   QMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFVC 61
           Q+R+VKV N+S   +E DI+EFFSFSGE+  +++Q                         
Sbjct: 4   QVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ------------------------- 63

Query: 62  RETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTV 121
               N   AYVT+K++QGA+TA+LL+GA I D SV I L  NY  PP A  +  + + + 
Sbjct: 64  ---SNEHSAYVTFKETQGAETAVLLSGASIADQSVIIELAPNYS-PPAAPHA--ETQSSG 123

Query: 122 TGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKI 181
             +   +AEDVVS+MLAKGFILGKDAV KAKAFDE+H  TS A+A V S+D+K+G+++K+
Sbjct: 124 AESVVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKL 183

Query: 182 TAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVT 241
           TAGT++VNEK++ +D+ FQV+E+TKS  A AEQ  SSAG+A+M N YV TG +W + A  
Sbjct: 184 TAGTSLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFN 243

Query: 242 AVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE 288
            V +AA EV Q TK   EK E E+     + +  +   ++ +H  E
Sbjct: 244 RVAQAAGEVGQKTK---EKVEAEQPSQPAQSQQQLPEGYSPIHSSE 255

[Close]
BLAST of CmoCh04G000820 vs. TrEMBL
Match: A0A0A0KIR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G023900 PE=4 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 2.1e-130
Identity = 263/303 (86.80%), Postives = 268/303 (88.45%), Query Frame = 1 

Query: 1   MQMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFV 60
           M MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQR                       
Sbjct: 1   MSMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQR----------------------- 60

Query: 61  CRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQT 120
             E+ENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTI LVENYHLPPEAMSSILDKRQT
Sbjct: 61  --ESENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQT 120

Query: 121 VTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEK 180
           VTG APNQAEDVVSTMLAKGFILGKDA+NKAKAFDER QLTSNASATV SIDRKMGITEK
Sbjct: 121 VTGIAPNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEK 180

Query: 181 ITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAV 240
           ITAGTAVVNEKVREMDE FQV EKTKSALAVAEQKA+SAGTALMSNYYV TGAAWFSNAV
Sbjct: 181 ITAGTAVVNEKVREMDEMFQVREKTKSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAV 240

Query: 241 TAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNS 300
           TAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNS
Sbjct: 241 TAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIISNFAELHLDEPLPGEPAIVPVNS 278

Query: 301 ADR 304
           ADR
Sbjct: 301 ADR 278

[Close]
BLAST of CmoCh04G000820 vs. TrEMBL
Match: A0A061E8Q5_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 3.3e-96
Identity = 201/300 (67.00%), Postives = 233/300 (77.67%), Query Frame = 1 

Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFVCR 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+R                         
Sbjct: 31  IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRR------------------------- 90

Query: 63  ETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVT 122
           ETEN QVAYVT+KDSQGADTA+LLTGA I DLSV I  VE+Y LPPEA+ S ++ +  VT
Sbjct: 91  ETENAQVAYVTFKDSQGADTAMLLTGATIVDLSVNITPVEDYQLPPEALVSNMENKPAVT 150

Query: 123 GNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKIT 182
            +   +AEDV+STMLAKGF+LGKDA+NKAKAFDERH  TSNASA VTSID+KMG++EK++
Sbjct: 151 DSTVKKAEDVMSTMLAKGFVLGKDAINKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLS 210

Query: 183 AGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTA 242
            GTAVVNEK+REM+E FQVSEKTKSA AVAEQKASSAGTA+MSN YV TGA W SNA +A
Sbjct: 211 IGTAVVNEKMREMNEIFQVSEKTKSAFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSA 270

Query: 243 VTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 302
           V KAAE+V  +TK KVEKAEEEKKE IYRERTGII++FA+ HLDE    EP IVPV+S D
Sbjct: 271 VAKAAEDVGMLTKEKVEKAEEEKKEIIYRERTGIISDFAQFHLDESSAAEPTIVPVDSTD 305

[Close]
BLAST of CmoCh04G000820 vs. TrEMBL
Match: A0A061EAC5_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 3.3e-96
Identity = 201/300 (67.00%), Postives = 233/300 (77.67%), Query Frame = 1 

Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFVCR 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+R                         
Sbjct: 2   IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRR------------------------- 61

Query: 63  ETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVT 122
           ETEN QVAYVT+KDSQGADTA+LLTGA I DLSV I  VE+Y LPPEA+ S ++ +  VT
Sbjct: 62  ETENAQVAYVTFKDSQGADTAMLLTGATIVDLSVNITPVEDYQLPPEALVSNMENKPAVT 121

Query: 123 GNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKIT 182
            +   +AEDV+STMLAKGF+LGKDA+NKAKAFDERH  TSNASA VTSID+KMG++EK++
Sbjct: 122 DSTVKKAEDVMSTMLAKGFVLGKDAINKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLS 181

Query: 183 AGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTA 242
            GTAVVNEK+REM+E FQVSEKTKSA AVAEQKASSAGTA+MSN YV TGA W SNA +A
Sbjct: 182 IGTAVVNEKMREMNEIFQVSEKTKSAFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSA 241

Query: 243 VTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 302
           V KAAE+V  +TK KVEKAEEEKKE IYRERTGII++FA+ HLDE    EP IVPV+S D
Sbjct: 242 VAKAAEDVGMLTKEKVEKAEEEKKEIIYRERTGIISDFAQFHLDESSAAEPTIVPVDSTD 276

[Close]
BLAST of CmoCh04G000820 vs. TrEMBL
Match: A0A061E9N0_THECC (RNA-binding family protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 5.9e-93
Identity = 200/300 (66.67%), Postives = 227/300 (75.67%), Query Frame = 1 

Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFVCR 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+R                         
Sbjct: 21  IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRR------------------------- 80

Query: 63  ETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVT 122
           ETEN QVAYVT+KDSQGADTA+LLTGA I DLSV I  VE+Y LPPEA+ S         
Sbjct: 81  ETENAQVAYVTFKDSQGADTAMLLTGATIVDLSVNITPVEDYQLPPEALVS--------- 140

Query: 123 GNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKIT 182
               N AEDV+STMLAKGF+LGKDA+NKAKAFDERH  TSNASA VTSID+KMG++EK++
Sbjct: 141 ----NMAEDVMSTMLAKGFVLGKDAINKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLS 200

Query: 183 AGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTA 242
            GTAVVNEK+REM+E FQVSEKTKSA AVAEQKASSAGTA+MSN YV TGA W SNA +A
Sbjct: 201 IGTAVVNEKMREMNEIFQVSEKTKSAFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSA 260

Query: 243 VTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 302
           V KAAE+V  +TK KVEKAEEEKKE IYRERTGII++FA+ HLDE    EP IVPV+S D
Sbjct: 261 VAKAAEDVGMLTKEKVEKAEEEKKEIIYRERTGIISDFAQFHLDESSAAEPTIVPVDSTD 282

[Close]
BLAST of CmoCh04G000820 vs. TrEMBL
Match: W9RFG7_9ROSA (Protein vip1 OS=Morus notabilis GN=L484_006763 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 3.8e-92
Identity = 196/300 (65.33%), Postives = 238/300 (79.33%), Query Frame = 1 

Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFVCR 62
           +RTV+V+NIS A SERDI+EFFSFSG+I YVEM+R                         
Sbjct: 31  IRTVRVNNISLAVSERDIKEFFSFSGDIQYVEMRR------------------------- 90

Query: 63  ETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVT 122
           E+E+TQ+AYVT+KDSQGADTAILL+GA IG+LSV+I  V++Y LPPEA+ S L+K  T T
Sbjct: 91  ESESTQLAYVTFKDSQGADTAILLSGAVIGNLSVSITPVDDYLLPPEALPSTLEKNPT-T 150

Query: 123 GNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKIT 182
             A  +AEDVVS+MLAKGFILGKDA+NKAK+FDERH L SNASATV SID K+G++EK++
Sbjct: 151 SPAVKKAEDVVSSMLAKGFILGKDAINKAKSFDERHHLMSNASATVASIDNKIGLSEKLS 210

Query: 183 AGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTA 242
            G AVVNEKVREMDE++QVSE TKSALAVAEQKASSAG+ALMSN+YV TGA+W S+A +A
Sbjct: 211 IGKAVVNEKVREMDERYQVSEMTKSALAVAEQKASSAGSALMSNHYVLTGASWVSSAFSA 270

Query: 243 VTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 302
             KAAE+V+ MTK K+EKAEEEK+E IYRERTGII++FA++HLDE     P IVPV+SAD
Sbjct: 271 FAKAAEDVSIMTKEKLEKAEEEKEEIIYRERTGIISDFAQIHLDESSSKGPPIVPVSSAD 304

[Close]
BLAST of CmoCh04G000820 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 256.1 bits (653), Expect = 2.6e-68
Identity = 151/291 (51.89%), Postives = 193/291 (66.32%), Query Frame = 1 

Query: 1   MQMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFV 60
           M M TVKVSN+S   ++RD++EFFSFSG+ILY+E Q                        
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQS----------------------- 60

Query: 61  CRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQT 120
             ETE T++AYVT+KD QGA+TA+LL+GA I D SV +++  +Y L PEA++S+  K   
Sbjct: 61  --ETERTKLAYVTFKDLQGAETAVLLSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSN 120

Query: 121 VTGNAPN----QAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMG 180
            +  A +    +AEDVVS+MLAKGFILGKDA+ KAK+ DE+HQLTS ASA V S D+K+G
Sbjct: 121 KSPKAGDSVLRKAEDVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIG 180

Query: 181 ITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWF 240
            T+KI  GT VV EKVRE+D+K+QVSEKTKSA+A AEQ  S+AG+A+M N YV TGA W 
Sbjct: 181 FTDKINTGTVVVGEKVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWV 240

Query: 241 SNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE 288
           + A   V KAAEEV Q  K KV  AEEE K         +++ FA +HL E
Sbjct: 241 TGAFNKVAKAAEEVGQKAKEKVGMAEEEDKRK-------VVDEFARVHLSE 259

[Close]
BLAST of CmoCh04G000820 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 250.8 bits (639), Expect = 1.1e-66
Identity = 145/295 (49.15%), Postives = 198/295 (67.12%), Query Frame = 1 

Query: 1   MQMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFV 60
           M M TVKVSN+S   +ERD++EFFSFSG+I Y+E Q                        
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQS----------------------- 60

Query: 61  CRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQT 120
             E + +++AYVT+KD QGA+TA+LLTG+ I D SVT+ +  +Y LPP+A++SI   +++
Sbjct: 61  --ENDGSKLAYVTFKDLQGAETAVLLTGSTIVDSSVTVTMSPDYQLPPDALASIESLKES 120

Query: 121 VTGNAPNQ--------AEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSID 180
              ++P +        AEDVVS M++KGF+LGKDA+ KAK+ DE+HQLTS ASA VTS D
Sbjct: 121 NKSSSPTREDVSVFRKAEDVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFD 180

Query: 181 RKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTG 240
           +++G TEKI  GT VV+EKV+E+D+KFQV+EKTKSA+A AEQ  S+AG+A+M N YV TG
Sbjct: 181 KRIGFTEKINTGTTVVSEKVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTG 240

Query: 241 AAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE 288
           A W + A   V+KAAEEV Q  K KV  AEEE++     E+  +++  A +HL E
Sbjct: 241 ATWVTGAFNRVSKAAEEVGQKAKEKVGLAEEEEE-----EKKKVVDEVAIVHLTE 265

[Close]
BLAST of CmoCh04G000820 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 242.3 bits (617), Expect = 3.9e-64
Identity = 149/297 (50.17%), Postives = 196/297 (65.99%), Query Frame = 1 

Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFVCR 62
           ++TVK+SN+S   S++D++EFFSFSG+I YVEM+                          
Sbjct: 28  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRS------------------------- 87

Query: 63  ETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQ-TV 122
           ET+ +QVAYVT+KDSQGA+TA+LLTGA I DL V+I    NY LPPEA++  LD ++ + 
Sbjct: 88  ETQESQVAYVTFKDSQGAETAMLLTGAVIADLRVSITPAVNYQLPPEALA--LDSQEHSF 147

Query: 123 TGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKI 182
            G +  +AEDVV+ M+ +G+ LGKDA+ KAKAFD+RH L SNASAT+ S+D KMG++EK+
Sbjct: 148 NGFSVKKAEDVVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKL 207

Query: 183 TAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVT 242
           + GT VVNEK+R++DE++QV E TKSALA AE+ A SA TALM+N YV +GA+WFSNA  
Sbjct: 208 SIGTTVVNEKLRDIDERYQVREITKSALAAAEETAISARTALMANPYVSSGASWFSNAFG 267

Query: 243 AVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV 299
           AVTKA +E       KVE   E +KE I               LD   P  PA+VPV
Sbjct: 268 AVTKAVKE-------KVENGGEGRKEII--------------TLDPSSPKVPAVVPV 276

[Close]
BLAST of CmoCh04G000820 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 214.9 bits (546), Expect = 6.7e-56
Identity = 129/286 (45.10%), Postives = 181/286 (63.29%), Query Frame = 1 

Query: 2   QMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFVC 61
           Q+R+VKV N+S   +E DI+EFFSFSGE+  +++Q                         
Sbjct: 4   QVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ------------------------- 63

Query: 62  RETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTV 121
             + N   AYVT+K++QGA+TA+LL+GA I D SV I L  NY  PP A  +  + + + 
Sbjct: 64  --SSNEHSAYVTFKETQGAETAVLLSGASIADQSVIIELAPNYS-PPAAPHA--ETQSSG 123

Query: 122 TGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKI 181
             +   +AEDVVS+MLAKGFILGKDAV KAKAFDE+H  TS A+A V S+D+K+G+++K+
Sbjct: 124 AESVVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKL 183

Query: 182 TAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVT 241
           TAGT++VNEK++ +D+ FQV+E+TKS  A AEQ  SSAG+A+M N YV TG +W + A  
Sbjct: 184 TAGTSLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFN 243

Query: 242 AVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE 288
            V +AA EV Q TK   EK E E+     + +  +   ++ +H  E
Sbjct: 244 RVAQAAGEVGQKTK---EKVEAEQPSQPAQSQQQLPEGYSPIHSSE 256

[Close]
BLAST of CmoCh04G000820 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 179.5 bits (454), Expect = 3.1e-45
Identity = 110/275 (40.00%), Postives = 164/275 (59.64%), Query Frame = 1 

Query: 4   RTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFVCRE 63
           R+V+V+N+S   +ER+I EFFSFSG+I ++E+Q+                         E
Sbjct: 5   RSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQK-------------------------E 64

Query: 64  TENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENY--------------HLPPE 123
              +++A+VT+ D +  + A+LL+GA I D  VTI   ENY               +P  
Sbjct: 65  FGQSRIAFVTFTDPKALEIALLLSGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLG 124

Query: 124 AMSSILDKRQTVTGNA---PNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASA 183
              S    +  + GN+    ++A+DVV+T+LAKG  LG+DAVNKAKAFDE+HQL +NASA
Sbjct: 125 LQESTTQTKTNMDGNSRAYVSKAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASA 184

Query: 184 TVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSN 243
            V+S D+++G+TEK++ G + VNEKV+ +D+K QVS+KT +A+  AE+K +  G+A+ S+
Sbjct: 185 KVSSFDKRVGLTEKLSVGISAVNEKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSS 244

Query: 244 YYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKA 262
            YV  GAAWFS A + V +  +     TK K   A
Sbjct: 245 RYVTAGAAWFSGAFSKVARVGQVAGSKTKEKFNLA 254

[Close]
BLAST of CmoCh04G000820 vs. NCBI nr
Match: gi|449449026|ref|XP_004142266.1| (PREDICTED: uncharacterized protein LOC101203394 [Cucumis sativus])

HSP 1 Score: 473.4 bits (1217), Expect = 3.0e-130
Identity = 263/303 (86.80%), Postives = 268/303 (88.45%), Query Frame = 1 

Query: 1   MQMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFV 60
           M MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQR                       
Sbjct: 1   MSMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQR----------------------- 60

Query: 61  CRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQT 120
             E+ENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTI LVENYHLPPEAMSSILDKRQT
Sbjct: 61  --ESENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQT 120

Query: 121 VTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEK 180
           VTG APNQAEDVVSTMLAKGFILGKDA+NKAKAFDER QLTSNASATV SIDRKMGITEK
Sbjct: 121 VTGIAPNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEK 180

Query: 181 ITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAV 240
           ITAGTAVVNEKVREMDE FQV EKTKSALAVAEQKA+SAGTALMSNYYV TGAAWFSNAV
Sbjct: 181 ITAGTAVVNEKVREMDEMFQVREKTKSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAV 240

Query: 241 TAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNS 300
           TAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNS
Sbjct: 241 TAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIISNFAELHLDEPLPGEPAIVPVNS 278

Query: 301 ADR 304
           ADR
Sbjct: 301 ADR 278

[Close]
BLAST of CmoCh04G000820 vs. NCBI nr
Match: gi|659103002|ref|XP_008452423.1| (PREDICTED: protein vip1-like isoform X1 [Cucumis melo])

HSP 1 Score: 472.6 bits (1215), Expect = 5.1e-130
Identity = 262/303 (86.47%), Postives = 268/303 (88.45%), Query Frame = 1 

Query: 1   MQMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFV 60
           M MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQR                       
Sbjct: 1   MSMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQR----------------------- 60

Query: 61  CRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQT 120
             E+ENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTI LVENYHLPPEAMSSILDKRQT
Sbjct: 61  --ESENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQT 120

Query: 121 VTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEK 180
           VTG APNQAEDVVSTMLAKGFILGKDA+NKAKAFDER Q TSNASATV SIDRKMGITEK
Sbjct: 121 VTGIAPNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQFTSNASATVASIDRKMGITEK 180

Query: 181 ITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAV 240
           ITAGTAVVNEKVREMDE FQV+EKTKSALAVAEQKA+SAGTALMSNYYV TGAAWFSNAV
Sbjct: 181 ITAGTAVVNEKVREMDEMFQVTEKTKSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAV 240

Query: 241 TAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNS 300
           TAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNS
Sbjct: 241 TAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIISNFAELHLDEPLPGEPAIVPVNS 278

Query: 301 ADR 304
           ADR
Sbjct: 301 ADR 278

[Close]
BLAST of CmoCh04G000820 vs. NCBI nr
Match: gi|659103004|ref|XP_008452424.1| (PREDICTED: protein vip1-like isoform X2 [Cucumis melo])

HSP 1 Score: 470.7 bits (1210), Expect = 1.9e-129
Identity = 261/301 (86.71%), Postives = 267/301 (88.70%), Query Frame = 1 

Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFVCR 62
           MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQR                         
Sbjct: 1   MRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQR------------------------- 60

Query: 63  ETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVT 122
           E+ENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTI LVENYHLPPEAMSSILDKRQTVT
Sbjct: 61  ESENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQTVT 120

Query: 123 GNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKIT 182
           G APNQAEDVVSTMLAKGFILGKDA+NKAKAFDER Q TSNASATV SIDRKMGITEKIT
Sbjct: 121 GIAPNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQFTSNASATVASIDRKMGITEKIT 180

Query: 183 AGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTA 242
           AGTAVVNEKVREMDE FQV+EKTKSALAVAEQKA+SAGTALMSNYYV TGAAWFSNAVTA
Sbjct: 181 AGTAVVNEKVREMDEMFQVTEKTKSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTA 240

Query: 243 VTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 302
           VTKAAEEVTQMTK KVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSAD
Sbjct: 241 VTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIISNFAELHLDEPLPGEPAIVPVNSAD 276

Query: 303 R 304
           R
Sbjct: 301 R 276

[Close]
BLAST of CmoCh04G000820 vs. NCBI nr
Match: gi|590697687|ref|XP_007045510.1| (RNA-binding family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 359.8 bits (922), Expect = 4.8e-96
Identity = 201/300 (67.00%), Postives = 233/300 (77.67%), Query Frame = 1 

Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFVCR 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+R                         
Sbjct: 2   IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRR------------------------- 61

Query: 63  ETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVT 122
           ETEN QVAYVT+KDSQGADTA+LLTGA I DLSV I  VE+Y LPPEA+ S ++ +  VT
Sbjct: 62  ETENAQVAYVTFKDSQGADTAMLLTGATIVDLSVNITPVEDYQLPPEALVSNMENKPAVT 121

Query: 123 GNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKIT 182
            +   +AEDV+STMLAKGF+LGKDA+NKAKAFDERH  TSNASA VTSID+KMG++EK++
Sbjct: 122 DSTVKKAEDVMSTMLAKGFVLGKDAINKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLS 181

Query: 183 AGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTA 242
            GTAVVNEK+REM+E FQVSEKTKSA AVAEQKASSAGTA+MSN YV TGA W SNA +A
Sbjct: 182 IGTAVVNEKMREMNEIFQVSEKTKSAFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSA 241

Query: 243 VTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 302
           V KAAE+V  +TK KVEKAEEEKKE IYRERTGII++FA+ HLDE    EP IVPV+S D
Sbjct: 242 VAKAAEDVGMLTKEKVEKAEEEKKEIIYRERTGIISDFAQFHLDESSAAEPTIVPVDSTD 276

[Close]
BLAST of CmoCh04G000820 vs. NCBI nr
Match: gi|590697684|ref|XP_007045509.1| (RNA-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 359.8 bits (922), Expect = 4.8e-96
Identity = 201/300 (67.00%), Postives = 233/300 (77.67%), Query Frame = 1 

Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRLVILFYVLIYLKKKKHVEEFDFVCR 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+R                         
Sbjct: 31  IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRR------------------------- 90

Query: 63  ETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVT 122
           ETEN QVAYVT+KDSQGADTA+LLTGA I DLSV I  VE+Y LPPEA+ S ++ +  VT
Sbjct: 91  ETENAQVAYVTFKDSQGADTAMLLTGATIVDLSVNITPVEDYQLPPEALVSNMENKPAVT 150

Query: 123 GNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKIT 182
            +   +AEDV+STMLAKGF+LGKDA+NKAKAFDERH  TSNASA VTSID+KMG++EK++
Sbjct: 151 DSTVKKAEDVMSTMLAKGFVLGKDAINKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLS 210

Query: 183 AGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTA 242
            GTAVVNEK+REM+E FQVSEKTKSA AVAEQKASSAGTA+MSN YV TGA W SNA +A
Sbjct: 211 IGTAVVNEKMREMNEIFQVSEKTKSAFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSA 270

Query: 243 VTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 302
           V KAAE+V  +TK KVEKAEEEKKE IYRERTGII++FA+ HLDE    EP IVPV+S D
Sbjct: 271 VAKAAEDVGMLTKEKVEKAEEEKKEIIYRERTGIISDFAQFHLDESSAAEPTIVPVDSTD 305

The following BLAST results are available for this feature:
BLAST of CmoCh04G000820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BPA1_ARATH2.0e-5445.10Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1[more]
BLAST of CmoCh04G000820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIR7_CUCSA2.1e-13086.80Uncharacterized protein OS=Cucumis sativus GN=Csa_5G023900 PE=4 SV=1[more]
A0A061E8Q5_THECC3.3e-9667.00RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1[more]
A0A061EAC5_THECC3.3e-9667.00RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1[more]
A0A061E9N0_THECC5.9e-9366.67RNA-binding family protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_011268... [more]
W9RFG7_9ROSA3.8e-9265.33Protein vip1 OS=Morus notabilis GN=L484_006763 PE=4 SV=1[more]
BLAST of CmoCh04G000820 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17720.12.6e-6851.89 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G46870.11.1e-6649.15 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G67950.33.9e-6450.17 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G16840.26.7e-5645.10 binding partner of acd11 1[more]
AT5G32450.13.1e-4540.00 RNA binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CmoCh04G000820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449026|ref|XP_004142266.1|3.0e-13086.80PREDICTED: uncharacterized protein LOC101203394 [Cucumis sativus][more]
gi|659103002|ref|XP_008452423.1|5.1e-13086.47PREDICTED: protein vip1-like isoform X1 [Cucumis melo][more]
gi|659103004|ref|XP_008452424.1|1.9e-12986.71PREDICTED: protein vip1-like isoform X2 [Cucumis melo][more]
gi|590697687|ref|XP_007045510.1|4.8e-9667.00RNA-binding family protein isoform 2 [Theobroma cacao][more]
gi|590697684|ref|XP_007045509.1|4.8e-9667.00RNA-binding family protein isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0019344 cysteine biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G000820.1CmoCh04G000820.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 4..103
score: 9
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 3..98
score: 1.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 3..103
score: 3.19
NoneNo IPR availableunknownCoilCoilcoord: 244..264
scor