CmaCh04G000840 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G000840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-binding family protein isoform 2
Location	Cma_Chr04 : 418288 .. 420964 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTCCTACTGAAAAACAATAATGAAAAAACTTCGCAAACAAATCGTATCCATTTCCAGAACCAAACTACCCGAAAAAACTAAATCCAAAACCAAAAATCACTTCCCCTTCCTCACAACAATTTATTATCTTCTCTTCGCGCCTTCATCTCATCATCTTCCGCCATAGCTAATTCCCTCTCGAACCTTTCTTTTGCCGCGCACAAATGTCGGTGAGTTCATCATAATCATCTTCTTCTTTTTGTCTGTGAATCTTTGATGCAGATCTGCCGCATTCGCGTTTGCTAATTTCTTTTTCCTGATTGTGAATGGTTGCGATGGTGATTTGGGGATTTGTGATTGCAATGTGGAATATGGTTTATGATTTTGATTTTTCAAGATCTCTGTTTCTGTATTCTCTTGTTCCTACAGTTTGTGAGAAGATTTCTACTGCTGTTGATGCATTCGTTTTCTTTCGTACATTTTTCTCGCTCGATTTGCTTCTTATGAGAATTTGGAATTCATCGAGAAAAGGTTTAGATTCTCATGGTATCGATAATTCATGAACAGTCTCTTCGTCTATTCCTCCTCCTCAAATCAGCTGTATATCCCAATTCCCAACTTCTTTTTCCTTCAAATTGACTTCTCTTTGAAATGTTGAACTGAATGGAAGTGAGAATTACTAATGGTTAACTCACTGCTAAACCCAATTTTTTGTTCTTAATTTTCTTTTTCTGAAATCAGCTACTTGAATCTCATCCTTGTTCTTTCACTTTGATGATGAACTGAATGAAGTGGAAGTTATAAACTGTTGAATTATCCCTAAACCCAAAAGCTTAAATTTGTTTTATACATTTTCTTAGGATGTGAATTGAGTATTAATTTGACTCGAGAATTATCAGTGTTCATGGAGGAAGAAATAACATTGTAAAGCTTCAAATGTAGATGTTTAGGCTTGAACATCAATCTTAGATTGATTGATGTCGAAAATTTAATCTTTTATACATATTCTTAGCATATGTTTATGGAGGAAGAAATAACATTGCAAAACTTCAAATTCAGAGGTTTAGGCTTGAACATCAATCTTAGATTGATTGATGTCGAAAACTTAAATCTTTTATAGATATTCTTAACACGAACACTTGCATTTCTTCATTGTTTTTAAAATCCGATGCAGATGAGAACCGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATCGAAGAATTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGGTTAGTGATTCTGTTCTTATGTGTTGATTTATTTGAAAAAAAGCATGCTGAAGAATTTGATTTTGTCTGTAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATTCTTTTGACAGTATGTTCCTTTATGAACTTTGATATATATATATATTTTTTTATAATTATGTTTTTAACTTCCCCCCCCTTCCTCTTCGGATATCTCAGGGAGCAAAAATTGGTGATCTATCTGTAACAATTGCTCTGGTTGAGAATTATCATCTTCCACCAGAAGCAATGTCATCAATCCTGGTAATTCTGCCTTGTTTATCATTATCAAATGCCTGTTGTGTATGCATTGTCGATGTTCGAGTTTATGCACGTAAGCGAATTACGTGTTTTGGTCATTGCGAGTTCTTGAAATCATTTGGTTCAAAATTCTTCATGTATTATCAGCTTCTTCAGCTGTTTGAAAAGGTTTTGAATTCTTGAGGATCTTAGTGAAATCAAGTAGCTGTTTTTGTCTAGAACGAGGGATTTTAGACTACTTACACTTTCTTAAATGTAATGATCTTTTGAAGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACAATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAACAAGGCAAAAGCGTTTGATGAACGACACCAGTTGACATCGAATGCTTCTGCGACCGTCACGTCCATAGATCGCAAGATGGGCATAATGGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCTGCTCTCGCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAGTAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAAGCTGCTGAGGAAGTGACTCAGATGACCAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAAAGTATATACCGTGAAAGAACTGGGATCATCAACAACTTTGCCGAGCTCCATCTCGATGAGCCATTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAAACAGTAAGTTGTGCATCATATTCATGAAAGCAGAAATCCTACACTTGTGAATTACTTTGCTTAACCATTTTGCTGTATGATATACATTTCATCTGGATGTTGAAATGTTGCGCGACATTCTTTTGGGTACAAAAAAATTACTTTTTGGATGCTTGATTGTATACCGTTTCACTTAACTAGTGTAATTTGTAATTTACAAATATAGATTATTGTCTCGTTTTCTTTTACCGTTTCTTTTGATTTTAGGGTAATATGAATTGG

mRNA sequence

CGCTCCTACTGAAAAACAATAATGAAAAAACTTCGCAAACAAATCGTATCCATTTCCAGAACCAAACTACCCGAAAAAACTAAATCCAAAACCAAAAATCACTTCCCCTTCCTCACAACAATTTATTATCTTCTCTTCGCGCCTTCATCTCATCATCTTCCGCCATAGCTAATTCCCTCTCGAACCTTTCTTTTGCCGCGCACAAATGTCGATGAGAACCGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATCGAAGAATTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATTCTTTTGACAGGAGCAAAAATTGGTGATCTATCTGTAACAATTGCTCTGGTTGAGAATTATCATCTTCCACCAGAAGCAATGTCATCAATCCTGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACAATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAACAAGGCAAAAGCGTTTGATGAACGACACCAGTTGACATCGAATGCTTCTGCGACCGTCACGTCCATAGATCGCAAGATGGGCATAATGGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCTGCTCTCGCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAGTAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAAGCTGCTGAGGAAGTGACTCAGATGACCAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAAAGTATATACCGTGAAAGAACTGGGATCATCAACAACTTTGCCGAGCTCCATCTCGATGAGCCATTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAAACAGTAAGTTGTGCATCATATTCATGAAAGCAGAAATCCTACACTTGTGAATTACTTTGCTTAACCATTTTGCTGTATGATATACATTTCATCTGGATGTTGAAATGTTGCGCGACATTCTTTTGGGTACAAAAAAATTACTTTTTGGATGCTTGATTGTATACCGTTTCACTTAACTAGTGTAATTTGTAATTTACAAATATAGATTATTGTCTCGTTTTCTTTTACCGTTTCTTTTGATTTTAGGGTAATATGAATTGG

Coding sequence (CDS)

ATGTCGATGAGAACCGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATCGAAGAATTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATTCTTTTGACAGGAGCAAAAATTGGTGATCTATCTGTAACAATTGCTCTGGTTGAGAATTATCATCTTCCACCAGAAGCAATGTCATCAATCCTGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACAATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAACAAGGCAAAAGCGTTTGATGAACGACACCAGTTGACATCGAATGCTTCTGCGACCGTCACGTCCATAGATCGCAAGATGGGCATAATGGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCTGCTCTCGCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAGTAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAAGCTGCTGAGGAAGTGACTCAGATGACCAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAAAGTATATACCGTGAAAGAACTGGGATCATCAACAACTTTGCCGAGCTCCATCTCGATGAGCCATTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAA

Protein sequence

MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

Homology

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BLAST of CmaCh04G000840 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.2e-56
Identity = 128/260 (49.23%), Postives = 178/260 (68.46%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +R+VKV N+S   +E DI+EFFSFSGE+  +++Q    N   AYVT+K++QGA+TA+LL+
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ---SNEHSAYVTFKETQGAETAVLLS 64

Query: 63  GAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I D SV I L  NY  PP A  +  + + +   +   +AEDVVS+MLAKGFILGKDA
Sbjct: 65  GASIADQSVIIELAPNYS-PPAAPHA--ETQSSGAESVVQKAEDVVSSMLAKGFILGKDA 124

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           V KAKAFDE+H  TS A+A V S+D+K+G+ +K+TAGT++VNEK++ +D+ FQV+E+TKS
Sbjct: 125 VGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTERTKS 184

Query: 183 ALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
             A AEQ  SSAG+A+M N YV TG +W + A   V +AA EV Q TK   EK E E+  
Sbjct: 185 VYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK---EKVEAEQPS 244

Query: 243 SIYRERTGIINNFAELHLDE 263
              + +  +   ++ +H  E
Sbjct: 245 QPAQSQQQLPEGYSPIHSSE 255

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BLAST of CmaCh04G000840 vs. Swiss-Prot
Match: VIPI_SCHPO (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-07
Identity = 55/207 (26.57%), Postives = 97/207 (46.86%), Query Frame = 1


Query: 6   VKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAK 65
           V V+NIS   +E+ I +FFSF G++  +  ++  E TQ A + ++      TA+LL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDAL 64

Query: 66  IGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAED----VVSTMLAKGFILGKD 125
           +G   + I   +         +S  D+       A  Q +     ++S +L++G+ L   
Sbjct: 65  LGQNKIQITSEDG------GAASTTDQGGAGGDQAARQEDKPRSAIISELLSRGYHLSDV 124

Query: 126 AVNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVN------EKVREMDEKFQ 185
            + K+   D+ + ++S          +  GI+E   +G   VN      EK  E+D KF 
Sbjct: 125 TLEKSIQLDQSYGVSS----------KFKGILESALSGVRSVNERYHVTEKANEVDNKFA 184

Query: 186 VSEK---TKSALAVAEQKA--SSAGTA 198
           +S+K   T S ++    KA  ++AGT+
Sbjct: 185 ISDKLNRTSSLVSTYFHKALETAAGTS 194

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BLAST of CmaCh04G000840 vs. TrEMBL
Match: A0A0A0KIR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G023900 PE=4 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 2.2e-134
Identity = 263/278 (94.60%), Postives = 268/278 (96.40%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           MSMRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQVAYVTYKDSQGADTAIL
Sbjct: 1   MSMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAIL 60

Query: 61  LTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGK 120
           LTGAKIGDLSVTI LVENYHLPPEAMSSILDKRQTVTG APNQAEDVVSTMLAKGFILGK
Sbjct: 61  LTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGK 120

Query: 121 DAVNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKT 180
           DA+NKAKAFDER QLTSNASATV SIDRKMGI EKITAGTAVVNEKVREMDE FQV EKT
Sbjct: 121 DALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVREKT 180

Query: 181 KSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEK 240
           KSALAVAEQKA+SAGTALMSNYYV TGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEK
Sbjct: 181 KSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEK 240

Query: 241 KESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR 279
           KESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Sbjct: 241 KESIYRERTGIISNFAELHLDEPLPGEPAIVPVNSADR 278

[Close]

BLAST of CmaCh04G000840 vs. TrEMBL
Match: A0A061E8Q5_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 3.5e-100
Identity = 201/275 (73.09%), Postives = 232/275 (84.36%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+RETEN QVAYVT+KDSQGADTA+LLT
Sbjct: 31  IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLT 90

Query: 63  GAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I DLSV I  VE+Y LPPEA+ S ++ +  VT +   +AEDV+STMLAKGF+LGKDA
Sbjct: 91  GATIVDLSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDA 150

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           +NKAKAFDERH  TSNASA VTSID+KMG+ EK++ GTAVVNEK+REM+E FQVSEKTKS
Sbjct: 151 INKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKS 210

Query: 183 ALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
           A AVAEQKASSAGTA+MSN YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEKKE
Sbjct: 211 AFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKE 270

Query: 243 SIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 278
            IYRERTGII++FA+ HLDE    EP IVPV+S D
Sbjct: 271 IIYRERTGIISDFAQFHLDESSAAEPTIVPVDSTD 305

[Close]

BLAST of CmaCh04G000840 vs. TrEMBL
Match: A0A061EAC5_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 3.5e-100
Identity = 201/275 (73.09%), Postives = 232/275 (84.36%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+RETEN QVAYVT+KDSQGADTA+LLT
Sbjct: 2   IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLT 61

Query: 63  GAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I DLSV I  VE+Y LPPEA+ S ++ +  VT +   +AEDV+STMLAKGF+LGKDA
Sbjct: 62  GATIVDLSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDA 121

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           +NKAKAFDERH  TSNASA VTSID+KMG+ EK++ GTAVVNEK+REM+E FQVSEKTKS
Sbjct: 122 INKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKS 181

Query: 183 ALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
           A AVAEQKASSAGTA+MSN YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEKKE
Sbjct: 182 AFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKE 241

Query: 243 SIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 278
            IYRERTGII++FA+ HLDE    EP IVPV+S D
Sbjct: 242 IIYRERTGIISDFAQFHLDESSAAEPTIVPVDSTD 276

[Close]

BLAST of CmaCh04G000840 vs. TrEMBL
Match: A0A061E9N0_THECC (RNA-binding family protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 8.1e-97
Identity = 200/275 (72.73%), Postives = 226/275 (82.18%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+RETEN QVAYVT+KDSQGADTA+LLT
Sbjct: 21  IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLT 80

Query: 63  GAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I DLSV I  VE+Y LPPEA+ S             N AEDV+STMLAKGF+LGKDA
Sbjct: 81  GATIVDLSVNITPVEDYQLPPEALVS-------------NMAEDVMSTMLAKGFVLGKDA 140

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           +NKAKAFDERH  TSNASA VTSID+KMG+ EK++ GTAVVNEK+REM+E FQVSEKTKS
Sbjct: 141 INKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKS 200

Query: 183 ALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
           A AVAEQKASSAGTA+MSN YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEKKE
Sbjct: 201 AFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKE 260

Query: 243 SIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 278
            IYRERTGII++FA+ HLDE    EP IVPV+S D
Sbjct: 261 IIYRERTGIISDFAQFHLDESSAAEPTIVPVDSTD 282

[Close]

BLAST of CmaCh04G000840 vs. TrEMBL
Match: F6HFB9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g06050 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 4.0e-96
Identity = 189/277 (68.23%), Postives = 233/277 (84.12%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           MS+RTVKVSNIS A +ERDI+EFFSFSG+I YVEMQRE E TQ+AYVT+K+SQGADTA+L
Sbjct: 1   MSIRTVKVSNISLAVTERDIKEFFSFSGDIQYVEMQREAEKTQLAYVTFKNSQGADTAVL 60

Query: 61  LTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGK 120
           LTGA I DLSV+I  V+NY LPP A+    +++   T +A  + EDVVSTMLAKGF+LGK
Sbjct: 61  LTGATIADLSVSITPVDNYQLPPGALPPSPEEKLHTTNSAVKKGEDVVSTMLAKGFVLGK 120

Query: 121 DAVNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKT 180
           DA+NKAKAFDE+H L SNASATV SIDRKMG+ EK++ GTAVVNEKV+EMDE++QV EKT
Sbjct: 121 DAINKAKAFDEQHHLVSNASATVASIDRKMGLSEKLSIGTAVVNEKVKEMDERYQVFEKT 180

Query: 181 KSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEK 240
           KSALA+AEQKAS AG+A+M+N+YV TGA+W S+A++ VTKAAE+V+ MT+ KV +AEEEK
Sbjct: 181 KSALAIAEQKASIAGSAIMNNHYVATGASWVSSALSMVTKAAEDVSVMTREKVGRAEEEK 240

Query: 241 KESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 278
           KE IYRE+ G +N +A++HLDE   GEP IVPV+S D
Sbjct: 241 KEIIYREKMGFVNEYAQIHLDESPAGEPPIVPVDSVD 277

[Close]

BLAST of CmaCh04G000840 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 268.5 bits (685), Expect = 4.7e-72
Identity = 150/266 (56.39%), Postives = 193/266 (72.56%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           M+M TVKVSN+S   ++RD++EFFSFSG+ILY+E Q ETE T++AYVT+KD QGA+TA+L
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPN----QAEDVVSTMLAKGF 120
           L+GA I D SV +++  +Y L PEA++S+  K    +  A +    +AEDVVS+MLAKGF
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGF 120

Query: 121 ILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQV 180
           ILGKDA+ KAK+ DE+HQLTS ASA V S D+K+G  +KI  GT VV EKVRE+D+K+QV
Sbjct: 121 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQV 180

Query: 181 SEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKA 240
           SEKTKSA+A AEQ  S+AG+A+M N YV TGA W + A   V KAAEEV Q  K KV  A
Sbjct: 181 SEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 240

Query: 241 EEEKKESIYRERTGIINNFAELHLDE 263
           EEE K         +++ FA +HL E
Sbjct: 241 EEEDKRK-------VVDEFARVHLSE 259

[Close]

BLAST of CmaCh04G000840 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 263.8 bits (673), Expect = 1.2e-70
Identity = 145/270 (53.70%), Postives = 198/270 (73.33%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           MSM TVKVSN+S   +ERD++EFFSFSG+I Y+E Q E + +++AYVT+KD QGA+TA+L
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQ--------AEDVVSTML 120
           LTG+ I D SVT+ +  +Y LPP+A++SI   +++   ++P +        AEDVVS M+
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMI 120

Query: 121 AKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDE 180
           +KGF+LGKDA+ KAK+ DE+HQLTS ASA VTS D+++G  EKI  GT VV+EKV+E+D+
Sbjct: 121 SKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQ 180

Query: 181 KFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAK 240
           KFQV+EKTKSA+A AEQ  S+AG+A+M N YV TGA W + A   V+KAAEEV Q  K K
Sbjct: 181 KFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEK 240

Query: 241 VEKAEEEKKESIYRERTGIINNFAELHLDE 263
           V  AEEE++     E+  +++  A +HL E
Sbjct: 241 VGLAEEEEE-----EKKKVVDEVAIVHLTE 265

[Close]

BLAST of CmaCh04G000840 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 255.4 bits (651), Expect = 4.1e-68
Identity = 149/272 (54.78%), Postives = 195/272 (71.69%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           ++TVK+SN+S   S++D++EFFSFSG+I YVEM+ ET+ +QVAYVT+KDSQGA+TA+LLT
Sbjct: 28  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLT 87

Query: 63  GAKIGDLSVTIALVENYHLPPEAMSSILDKRQ-TVTGNAPNQAEDVVSTMLAKGFILGKD 122
           GA I DL V+I    NY LPPEA++  LD ++ +  G +  +AEDVV+ M+ +G+ LGKD
Sbjct: 88  GAVIADLRVSITPAVNYQLPPEALA--LDSQEHSFNGFSVKKAEDVVNIMVGRGYALGKD 147

Query: 123 AVNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKTK 182
           A+ KAKAFD+RH L SNASAT+ S+D KMG+ EK++ GT VVNEK+R++DE++QV E TK
Sbjct: 148 AMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDERYQVREITK 207

Query: 183 SALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKK 242
           SALA AE+ A SA TALM+N YV +GA+WFSNA  AVTKA +E       KVE   E +K
Sbjct: 208 SALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKAVKE-------KVENGGEGRK 267

Query: 243 ESIYRERTGIINNFAELHLDEPLPGEPAIVPV 274
           E I               LD   P  PA+VPV
Sbjct: 268 EII--------------TLDPSSPKVPAVVPV 276

[Close]

BLAST of CmaCh04G000840 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 222.6 bits (566), Expect = 3.0e-58
Identity = 128/260 (49.23%), Postives = 180/260 (69.23%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +R+VKV N+S   +E DI+EFFSFSGE+  +++Q   E++  AYVT+K++QGA+TA+LL+
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I D SV I L  NY  PP A  +  + + +   +   +AEDVVS+MLAKGFILGKDA
Sbjct: 65  GASIADQSVIIELAPNYS-PPAAPHA--ETQSSGAESVVQKAEDVVSSMLAKGFILGKDA 124

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           V KAKAFDE+H  TS A+A V S+D+K+G+ +K+TAGT++VNEK++ +D+ FQV+E+TKS
Sbjct: 125 VGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTERTKS 184

Query: 183 ALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
             A AEQ  SSAG+A+M N YV TG +W + A   V +AA EV Q TK   EK E E+  
Sbjct: 185 VYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK---EKVEAEQPS 244

Query: 243 SIYRERTGIINNFAELHLDE 263
              + +  +   ++ +H  E
Sbjct: 245 QPAQSQQQLPEGYSPIHSSE 256

[Close]

BLAST of CmaCh04G000840 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 191.0 bits (484), Expect = 9.5e-49
Identity = 109/250 (43.60%), Postives = 163/250 (65.20%), Query Frame = 1


Query: 4   RTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTG 63
           R+V+V+N+S   +ER+I EFFSFSG+I ++E+Q+E   +++A+VT+ D +  + A+LL+G
Sbjct: 5   RSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLSG 64

Query: 64  AKIGDLSVTIALVENY--------------HLPPEAMSSILDKRQTVTGNA---PNQAED 123
           A I D  VTI   ENY               +P     S    +  + GN+    ++A+D
Sbjct: 65  ATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKAQD 124

Query: 124 VVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEK 183
           VV+T+LAKG  LG+DAVNKAKAFDE+HQL +NASA V+S D+++G+ EK++ G + VNEK
Sbjct: 125 VVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISAVNEK 184

Query: 184 VREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVT 237
           V+ +D+K QVS+KT +A+  AE+K +  G+A+ S+ YV  GAAWFS A + V +  +   
Sbjct: 185 VKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVGQVAG 244

[Close]

BLAST of CmaCh04G000840 vs. NCBI nr
Match: gi|449449026|ref|XP_004142266.1| (PREDICTED: uncharacterized protein LOC101203394 [Cucumis sativus])

HSP 1 Score: 486.5 bits (1251), Expect = 3.1e-134
Identity = 263/278 (94.60%), Postives = 268/278 (96.40%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           MSMRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQVAYVTYKDSQGADTAIL
Sbjct: 1   MSMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAIL 60

Query: 61  LTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGK 120
           LTGAKIGDLSVTI LVENYHLPPEAMSSILDKRQTVTG APNQAEDVVSTMLAKGFILGK
Sbjct: 61  LTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGK 120

Query: 121 DAVNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKT 180
           DA+NKAKAFDER QLTSNASATV SIDRKMGI EKITAGTAVVNEKVREMDE FQV EKT
Sbjct: 121 DALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVREKT 180

Query: 181 KSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEK 240
           KSALAVAEQKA+SAGTALMSNYYV TGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEK
Sbjct: 181 KSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEK 240

Query: 241 KESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR 279
           KESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Sbjct: 241 KESIYRERTGIISNFAELHLDEPLPGEPAIVPVNSADR 278

[Close]

BLAST of CmaCh04G000840 vs. NCBI nr
Match: gi|659103002|ref|XP_008452423.1| (PREDICTED: protein vip1-like isoform X1 [Cucumis melo])

HSP 1 Score: 485.7 bits (1249), Expect = 5.3e-134
Identity = 262/278 (94.24%), Postives = 268/278 (96.40%), Query Frame = 1


Query: 1   MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAIL 60
           MSMRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQVAYVTYKDSQGADTAIL
Sbjct: 1   MSMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAIL 60

Query: 61  LTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGK 120
           LTGAKIGDLSVTI LVENYHLPPEAMSSILDKRQTVTG APNQAEDVVSTMLAKGFILGK
Sbjct: 61  LTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGK 120

Query: 121 DAVNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKT 180
           DA+NKAKAFDER Q TSNASATV SIDRKMGI EKITAGTAVVNEKVREMDE FQV+EKT
Sbjct: 121 DALNKAKAFDERLQFTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKT 180

Query: 181 KSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEK 240
           KSALAVAEQKA+SAGTALMSNYYV TGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEK
Sbjct: 181 KSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEK 240

Query: 241 KESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR 279
           KESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Sbjct: 241 KESIYRERTGIISNFAELHLDEPLPGEPAIVPVNSADR 278

[Close]

BLAST of CmaCh04G000840 vs. NCBI nr
Match: gi|659103004|ref|XP_008452424.1| (PREDICTED: protein vip1-like isoform X2 [Cucumis melo])

HSP 1 Score: 482.3 bits (1240), Expect = 5.9e-133
Identity = 260/276 (94.20%), Postives = 266/276 (96.38%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           MRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRE+ENTQVAYVTYKDSQGADTAILLT
Sbjct: 1   MRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAILLT 60

Query: 63  GAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GAKIGDLSVTI LVENYHLPPEAMSSILDKRQTVTG APNQAEDVVSTMLAKGFILGKDA
Sbjct: 61  GAKIGDLSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGKDA 120

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           +NKAKAFDER Q TSNASATV SIDRKMGI EKITAGTAVVNEKVREMDE FQV+EKTKS
Sbjct: 121 LNKAKAFDERLQFTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKS 180

Query: 183 ALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
           ALAVAEQKA+SAGTALMSNYYV TGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKE
Sbjct: 181 ALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKE 240

Query: 243 SIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR 279
           SIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Sbjct: 241 SIYRERTGIISNFAELHLDEPLPGEPAIVPVNSADR 276

[Close]

BLAST of CmaCh04G000840 vs. NCBI nr
Match: gi|590697687|ref|XP_007045510.1| (RNA-binding family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 372.9 bits (956), Expect = 5.0e-100
Identity = 201/275 (73.09%), Postives = 232/275 (84.36%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+RETEN QVAYVT+KDSQGADTA+LLT
Sbjct: 2   IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLT 61

Query: 63  GAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I DLSV I  VE+Y LPPEA+ S ++ +  VT +   +AEDV+STMLAKGF+LGKDA
Sbjct: 62  GATIVDLSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDA 121

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           +NKAKAFDERH  TSNASA VTSID+KMG+ EK++ GTAVVNEK+REM+E FQVSEKTKS
Sbjct: 122 INKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKS 181

Query: 183 ALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
           A AVAEQKASSAGTA+MSN YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEKKE
Sbjct: 182 AFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKE 241

Query: 243 SIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 278
            IYRERTGII++FA+ HLDE    EP IVPV+S D
Sbjct: 242 IIYRERTGIISDFAQFHLDESSAAEPTIVPVDSTD 276

[Close]

BLAST of CmaCh04G000840 vs. NCBI nr
Match: gi|590697684|ref|XP_007045509.1| (RNA-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 372.9 bits (956), Expect = 5.0e-100
Identity = 201/275 (73.09%), Postives = 232/275 (84.36%), Query Frame = 1


Query: 3   MRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLT 62
           +RTVKVSNIS A S+RDI+EFFSFSG+I YVEM+RETEN QVAYVT+KDSQGADTA+LLT
Sbjct: 31  IRTVKVSNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLT 90

Query: 63  GAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDA 122
           GA I DLSV I  VE+Y LPPEA+ S ++ +  VT +   +AEDV+STMLAKGF+LGKDA
Sbjct: 91  GATIVDLSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDA 150

Query: 123 VNKAKAFDERHQLTSNASATVTSIDRKMGIMEKITAGTAVVNEKVREMDEKFQVSEKTKS 182
           +NKAKAFDERH  TSNASA VTSID+KMG+ EK++ GTAVVNEK+REM+E FQVSEKTKS
Sbjct: 151 INKAKAFDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKS 210

Query: 183 ALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKE 242
           A AVAEQKASSAGTA+MSN YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEKKE
Sbjct: 211 AFAVAEQKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKE 270

Query: 243 SIYRERTGIINNFAELHLDEPLPGEPAIVPVNSAD 278
            IYRERTGII++FA+ HLDE    EP IVPV+S D
Sbjct: 271 IIYRERTGIISDFAQFHLDESSAAEPTIVPVDSTD 305

The following BLAST results are available for this feature:

BLAST of CmaCh04G000840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BPA1_ARATH	1.2e-56	49.23	Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1	[more]
VIPI_SCHPO	6.5e-07	26.57	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1...	[more]

BLAST of CmaCh04G000840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIR7_CUCSA	2.2e-134	94.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G023900 PE=4 SV=1	[more]
A0A061E8Q5_THECC	3.5e-100	73.09	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1	[more]
A0A061EAC5_THECC	3.5e-100	73.09	RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1	[more]
A0A061E9N0_THECC	8.1e-97	72.73	RNA-binding family protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_011268...	[more]
F6HFB9_VITVI	4.0e-96	68.23	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g06050 PE=4 SV=...	[more]

BLAST of CmaCh04G000840 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17720.1	4.7e-72	56.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	1.2e-70	53.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G67950.3	4.1e-68	54.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	3.0e-58	49.23	binding partner of acd11 1	[more]
AT5G32450.1	9.5e-49	43.60	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmaCh04G000840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449026\|ref\|XP_004142266.1\|	3.1e-134	94.60	PREDICTED: uncharacterized protein LOC101203394 [Cucumis sativus]	[more]
gi\|659103002\|ref\|XP_008452423.1\|	5.3e-134	94.24	PREDICTED: protein vip1-like isoform X1 [Cucumis melo]	[more]
gi\|659103004\|ref\|XP_008452424.1\|	5.9e-133	94.20	PREDICTED: protein vip1-like isoform X2 [Cucumis melo]	[more]
gi\|590697687\|ref\|XP_007045510.1\|	5.0e-100	73.09	RNA-binding family protein isoform 2 [Theobroma cacao]	[more]
gi\|590697684\|ref\|XP_007045509.1\|	5.0e-100	73.09	RNA-binding family protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G000840.1	CmaCh04G000840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 7..68 score: 4.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..74 score: 1.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 4..78 score: 11
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 3..73 score: 1.7
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..78 score: 2.17
None	No IPR available	unknown	Coil	Coil	coord: 219..239 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G000840	Cucsa.174100	Cucumber (Gy14) v1	cgycmaB0493
CmaCh04G000840	Cla002206	Watermelon (97103) v1	cmawmB684
CmaCh04G000840	Csa5G023900	Cucumber (Chinese Long) v2	cmacuB736
CmaCh04G000840	MELO3C016673	Melon (DHL92) v3.5.1	cmameB708
CmaCh04G000840	ClCG07G005450	Watermelon (Charleston Gray)	cmawcgB674
CmaCh04G000840	CSPI05G00650	Wild cucumber (PI 183967)	cmacpiB740
CmaCh04G000840	CmoCh04G000820	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G000840	Lsi04G009920	Bottle gourd (USVL1VR-Ls)	cmalsiB671
CmaCh04G000840	Cp4.1LG01g06000	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G000840	MELO3C016673.2	Melon (DHL92) v3.6.1	cmamedB797
CmaCh04G000840	CsaV3_5G014500	Cucumber (Chinese Long) v3	cmacucB0873
CmaCh04G000840	Cla97C07G133770	Watermelon (97103) v2	cmawmbB781
CmaCh04G000840	CsGy5G010910	Cucumber (Gy14) v2	cgybcmaB660
CmaCh04G000840	Carg27433	Silver-seed gourd	carcmaB1344
CmaCh04G000840	Carg00147	Silver-seed gourd	carcmaB0949

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G000840	CmaCh04G010400	Cucurbita maxima (Rimu)	cmacmaB531

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G000840	Cucumber (Chinese Long) v3	cmacucB0894
CmaCh04G000840	Wax gourd	cmawgoB0830
CmaCh04G000840	Wax gourd	cmawgoB0890
CmaCh04G000840	Cucurbita moschata (Rifu)	cmacmoB730
CmaCh04G000840	Melon (DHL92) v3.5.1	cmameB639
CmaCh04G000840	Watermelon (97103) v1	cmawmB713
CmaCh04G000840	Cucurbita pepo (Zucchini)	cmacpeB722