CmoCh04G011100 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G011100
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding family protein isoform 2
Location	Cmo_Chr04 : 5655708 .. 5660406 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACGGACTGTCTTGATACGCTTTTGAATACAAAATTCTTCACTCCTTGCAATCTTCATCCTAGTCTCCAGACATATAAATTCTGCATTGATTGTAGTGTTAGCTTCTGCACGAATTGTACAGTCCGTAATCTTCATGGGCAGGTTCGTATCTGGAGATATTCCTATCATGATGTTGTGCGCGTTCAGGTAATGAAGAATCACTTTTGCTGTGCAGAGATTCAGGTATAATACATTCTTTCCCTTGTGCCTCCCGTGTCTGGGCCTTGCGACGTGTGCGAGTGCCGAGCAACTTTCCGACTATAATTGTCTTTGATAGAAAAGATGCCTGAATTCCATCTGTTTGTTGCTGATCTTTTTGCTTATGTTGTTGAAATCATCGACTTTAGAGATAGGTTTTCCTTTTTTCATTCAAACAGATAGTTTTTAAATTTGTTAGCCAAATTATCTGGTTTTTAAGCACTAGTAATTCTTGAATCGAAAATGATATGTTCTTGAGGAAATCTCACCAGCCTGATTTTGATCCTTGCCAGTTTGAATGGATGAATATACAATTTGATACTTTGATTCCTGTCCGATACCAGTTTTAGTAATAGGAATAAAGTTTGTTTGCTATCGAGTTGTTTTTTGGTTTGTTTTGTAAAAGTTTGCCTTTGTTCTATGAATCCATCTCTATGCCCCCTAACTTGAAGCCCCCAATTGCTTGATTCTGCAGTCATATCGAGTCAATGGTGAAATAGCTGTTCATCTAAACTCCCGTGGTCAACCCGTCGACACCAAATCACCAAAGCGGAAGTTTGGTGATTTTTGTGAAGATTGTGGCAGAAGTGTAAATGATCCTCATCCCTTCTGTTCCATCGCTTGCAAGGTTAGAAACATATGAACCTTATCCACATCAGTTGGACCTTACAAGAGCATATAAAATTCTTCCTAGCAGGCGGGTTTTAAAAACTGTGAGACCGACGCCTGTACATAACGAGTCAAATCTGACAATATCTGCTAATAGTAAGCTTAGACTGTTACAAATAATATCAAAATCAGTCCCCGAGTAGTGTGCCGCTGGGCTCACAAGCGGGTGGATTGTAAGATCCCTCGTCGATTGAAGAAAGGAATGAAACATTCTTTATAAGAGTGTAGAAACCTCTCTCTAAGAGACGCGTTTTAAAAATCGTGAGGTTGACGGCGCGGCCCGACAATATTCTAAACAATTTTATTACTGCATCACACACAGATTGTTAACAATTCAAATGCTGTAAAAACATCAGGTTTCTGTGAACTCAAAGTTCAAGGAACAGATCATTGGAACCATCATATATCCGAGCCCGGAATCCATTTACTTATCATTCAAGGAAAAAAGCAGCCCAGAAACAGAAGCATGGGAATTGGAATCAACCATATCAGTTGCAGAGTCCACAGAAGAGACCCAAGCTACCTCTTCATCTTCAAGGCCAAGAAAACGCAGAAGGAAAGGCATCCCTCGCAGGTGTCCATTTTTTTGACAAGAAGATAAGATGCAACATTTTCATCTCCTTTTTAACTTCCTTGTGGCTCTCAAATGGTATGCTTCTTAATTTTTATTTACCTTGACTCGTATATTTCATAGAATGTCTAGTAGCGAAATGAAATCATCAATATAAAAGCCAGAATTGTAGATCTCTTTGCTGCTGCATGGTTTTTTAAATTTCTTTTTCAAGTTTTGACAAGATTAGTTGGTTGACAAAGCTGATATTAACATATATTCTTTTACACTAATTCTTTGCCTCGTCCATGGCGAGTCTTGGCCGCTACCGACGATGGCGACGTGGGAAGGATGGAGGTGTTTATGCACGCAGCGATGATGGGAGGAGGTAATGGAGGTGTTTATGCACGCAGCGATGATGGGAGGAGGTAACCTCTAAATTAAAATTAAGTATTTTAATCAATTTAACAATGTTCAAATTAATTGGTAGTGCTATGTTAAACCAATTTAAATAAAAACAACAAAAATAGAGAAATATTTTTATTTTATATATTAAATAATTATCACCTTTACTTCGGTTGAAATTTGGATAATTTTCTATTTTATCAATGAGTGGCTCAGTGATTTGGTACAGTCAAATTTGGTCCCGCCTCCGCTAGAGCCCAAAAAAAAAGGCTCTTCCCTACAAGAATTTCGTCTCTTCTCTTCTTCTCTTCTTCTCCTCTTCTCCCCGCCGCTTGATCTCATCAACCTATCATCTTCCGCTATCTCTAATTCCCTTCTCAACCATTCTTTTACCTTTCAGAAATGTCGGTGAGTTCTTCTTCATCATCATCTTGTTCTTCTGTTATCTGTGAATCTTTGATGCAGATCTGCCGCATTTATGTTTAGTAATTGTTTTTTTGTTTCTGATGGGTAATGGCGATTTGGGGAATTGTAGTTGTAATGTGGAACTAGGGTTTTGTTTTTCTTTCTAATTTTGATTTTGATTTTGATTTTCAAGGTCTCTGGCTTCTACAATGACCTCTGATTCTGATTGGTTGCCGACAGAATTCCACTGATTTTTCTCCCCCAAATTTTGAATTTATCAACAAAACAGTCTCTTCGTCCCTTCCTTCCTCTCAAATCAGCTGCTTCAATCCCAACTTTTGTTTTCAGTTTCTTCTCAAAAAGGTTGAGTGAAGTGAAAATTAGCATGGTGAATTCACTGCTAAATCCTTTTTGTTTTTGGTTCTTAATTTTCTATTTCTGAAACCAGCTACCTGAATCTCACCCTAGTTCTTTCTTTTCACTTTGATGATGAACTCAACGGAGTCAACACTAAGTACTGTTCACTACTAAATCCAAAAACTTGATAAGTATGATGAAGCTCAACAATTATTAGAATGTTAATTCTCTAACTAGTGCTGCCTTTTAAAAAAATTTAAATACTAGTTTTTCGTACAAAAATTGTAGGGGTGTGGAGGGTAGAAGTATCAACTTTTGAGAAGATAAATGATAGTCTTATCTACTAAGTTTGTAATAGTTCGCCTACAGCTAGCCGACATTGTTCTTTTTGTGTTTTCCCTTTCGAGCTTTTCCTCGAGATTTTTAAAATACCTCTACTAGGAGAGGTTTCCATGCCCTTATAAAAAATGCTTCGTTCCCCTCTGTAATCGACATGAGATCCCACAATCCATCCCTCTAGGGCCCAGCGTTCTCGTTGGCATTGTGAGATTTGATATATACACATATATATATGTGTATTCTGTCATTCATAAGTTTAGGTATTAATTTGAAGAAGGAATGATATTATAAATGTACATTCGAACACTTGCATTTCTTAATTATTTTTAATGGGTTTTTTTCTTTTTTTCTTTTAAAAAAAATCTTATGTAGATGAGAACTGTCAAGGTCAGCAATATCTCAAAAGCTACTTCTGAGAGAGATATCAAAGAATTCCTTTCATTCTCTGGTCAAATCCTTTATGTTGAAATGCAAAGGTTAGTGATTATATTCTATCTGTTTGTTTTGTTTGGAGAATTATTATTATTATTATTATTGTTTTTATTTTGTGTAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATATGAGGATTCTCAAGGAGCAGATACTGCAATACTTTTAACTGTATGTTCCTTTTTAGGCACATTGGTCTCTTTATTTCTATAATTTATGTTAGTTTTTGTGAACCTTTCTCTCTTAATCTCTTCTCTTAGGGTGCAAAAATTGGTGATCTATTTGTATCAATTACTCTGGTTGAGAATTACCATCTTCCACCTGAAGCAATGTCATCAATCCTGGTAATAAACGTCTCGTGTATATGCATTCGTTGTCGACCCTTGAATTCCTGCACATAAACGAGTTACATTATTCGATTTGAAATCTTGATTATCAAGTAGCCGTCTTTGTCTTCAAGGAGGTATTGCAAACTATTTACTTAAAATCTTAATGACCTTTTGAAGGATAAAAGGAAAACTGCTACCAGGATTGCTCCGAGTCAGGCTGAAGACGTTGTAAGTACAATGCTCGCAAAAGGCTTCATCTTGGGGAAGGATGCTCTCAACAAGGCAAAAGCGTTCGACGAACGACTCCAATTGACATCAAACGCTTCTGCAACTGTCGCTTCCATTGACAGGAAGATGGGTATAACTGAGAAAATAACTGCAGGCACAGCAGTGGTGAATGAAAAGGTCAGGGAGATGGATGAAATGTTCCAGGTTACGGAGAAGACGAAATCCGCTCTAGCAGTTGCCGAGCAGAAGGCAAGCAACGCTGGGACTGCGCTCATGAGCAACTATTACGTGTTAACTGGAGCAGCTTGGTTTTCAAATGCTGTAACTGCAGTTACAAAAGCTGCCGAGGAAGTGACCCAGATGACAAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAGAGGAGAGTATATACCACGAAAGAACCGGGATCATCAATAACTTCGCCGAGTTCCATCTCGACGAGCCTTTACCGGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAGACAGTAAGTTGTGAATCATACGCATGAAAACCTACACTTGTGAAATACATTGCTTTCCCCAATCAACTGTATGATATATACATTTTCATCTAGAGGTGCTCCAATTACAGGGTTTACTTCTTTATACACCTGCTCCTGTTGAAATGTCATGACGTTCTTTTGAGTGAAAAATTCACTTTTTGAATACTTGATTATACAAT

mRNA sequence

ATGGAAACGGACTGTCTTGATACGCTTTTGAATACAAAATTCTTCACTCCTTGCAATCTTCATCCTAGTCTCCAGACATATAAATTCTGCATTGATTGTAGTGTTAGCTTCTGCACGAATTGTACAGTCCGTAATCTTCATGGGCAGGTTCGTATCTGGAGATATTCCTATCATGATGTTGTGCGCGTTCAGTCATATCGAGTCAATGGTGAAATAGCTGTTCATCTAAACTCCCGTGGTCAACCCGTCGACACCAAATCACCAAAGCGGAAGTTTGGTGATTTTTGTGAAGATTGTGGCAGAAGTGTTTCTGTGAACTCAAAGTTCAAGGAACAGATCATTGGAACCATCATATATCCGAGCCCGGAATCCATTTACTTATCATTCAAGGAAAAAAGCAGCCCAGAAACAGAAGCATGGGAATTGGAATCAACCATATCAGTTGCAGAGTCCACAGAAGAGACCCAAGCTACCTCTTCATCTTCAAGGCCAAGAAAACGCAGAAGGAAAGGCATCCCTCGCAGTCTTGGCCGCTACCGACGATGGCGACGTGGGAAGGATGGAGGTGTTTATGCACGCAGCGATGATGGGAGGAGCAATATCTCAAAAGCTACTTCTGAGAGAGATATCAAAGAATTCCTTTCATTCTCTGGTCAAATCCTTTATGTTGAAATGCAAAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATATGAGGATTCTCAAGGAGCAGATACTGCAATACTTTTAACTGGTGCAAAAATTGGTGATCTATTTGTATCAATTACTCTGGTTGAGAATTACCATCTTCCACCTGAAGCAATGTCATCAATCCTGGATAAAAGGAAAACTGCTACCAGGATTGCTCCGAGTCAGGCTGAAGACGTTGTAAGTACAATGCTCGCAAAAGGCTTCATCTTGGGGAAGGATGCTCTCAACAAGGCAAAAGCGTTCGACGAACGACTCCAATTGACATCAAACGCTTCTGCAACTGTCGCTTCCATTGACAGGAAGATGGGTATAACTGAGAAAATAACTGCAGGCACAGCAGTGGTGAATGAAAAGGTCAGGGAGATGGATGAAATGTTCCAGGTTACGGAGAAGACGAAATCCGCTCTAGCAGTTGCCGAGCAGAAGGCAAGCAACGCTGGGACTGCGCTCATGAGCAACTATTACGTGTTAACTGGAGCAGCTTGGTTTTCAAATGCTGTAACTGCAGTTACAAAAGCTGCCGAGGAAGTGACCCAGATGACAAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAGAGGAGAGTATATACCACGAAAGAACCGGGATCATCAATAACTTCGCCGAGTTCCATCTCGACGAGCCTTTACCGGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAGACAGTAAGTTGTGAATCATACGCATGAAAACCTACACTTGTGAAATACATTGCTTTCCCCAATCAACTGTATGATATATACATTTTCATCTAGAGGTGCTCCAATTACAGGGTTTACTTCTTTATACACCTGCTCCTGTTGAAATGTCATGACGTTCTTTTGAGTGAAAAATTCACTTTTTGAATACTTGATTATACAAT

Coding sequence (CDS)

ATGGAAACGGACTGTCTTGATACGCTTTTGAATACAAAATTCTTCACTCCTTGCAATCTTCATCCTAGTCTCCAGACATATAAATTCTGCATTGATTGTAGTGTTAGCTTCTGCACGAATTGTACAGTCCGTAATCTTCATGGGCAGGTTCGTATCTGGAGATATTCCTATCATGATGTTGTGCGCGTTCAGTCATATCGAGTCAATGGTGAAATAGCTGTTCATCTAAACTCCCGTGGTCAACCCGTCGACACCAAATCACCAAAGCGGAAGTTTGGTGATTTTTGTGAAGATTGTGGCAGAAGTGTTTCTGTGAACTCAAAGTTCAAGGAACAGATCATTGGAACCATCATATATCCGAGCCCGGAATCCATTTACTTATCATTCAAGGAAAAAAGCAGCCCAGAAACAGAAGCATGGGAATTGGAATCAACCATATCAGTTGCAGAGTCCACAGAAGAGACCCAAGCTACCTCTTCATCTTCAAGGCCAAGAAAACGCAGAAGGAAAGGCATCCCTCGCAGTCTTGGCCGCTACCGACGATGGCGACGTGGGAAGGATGGAGGTGTTTATGCACGCAGCGATGATGGGAGGAGCAATATCTCAAAAGCTACTTCTGAGAGAGATATCAAAGAATTCCTTTCATTCTCTGGTCAAATCCTTTATGTTGAAATGCAAAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATATGAGGATTCTCAAGGAGCAGATACTGCAATACTTTTAACTGGTGCAAAAATTGGTGATCTATTTGTATCAATTACTCTGGTTGAGAATTACCATCTTCCACCTGAAGCAATGTCATCAATCCTGGATAAAAGGAAAACTGCTACCAGGATTGCTCCGAGTCAGGCTGAAGACGTTGTAAGTACAATGCTCGCAAAAGGCTTCATCTTGGGGAAGGATGCTCTCAACAAGGCAAAAGCGTTCGACGAACGACTCCAATTGACATCAAACGCTTCTGCAACTGTCGCTTCCATTGACAGGAAGATGGGTATAACTGAGAAAATAACTGCAGGCACAGCAGTGGTGAATGAAAAGGTCAGGGAGATGGATGAAATGTTCCAGGTTACGGAGAAGACGAAATCCGCTCTAGCAGTTGCCGAGCAGAAGGCAAGCAACGCTGGGACTGCGCTCATGAGCAACTATTACGTGTTAACTGGAGCAGCTTGGTTTTCAAATGCTGTAACTGCAGTTACAAAAGCTGCCGAGGAAGTGACCCAGATGACAAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAGAGGAGAGTATATACCACGAAAGAACCGGGATCATCAATAACTTCGCCGAGTTCCATCTCGACGAGCCTTTACCGGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAG

Homology

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BLAST of CmoCh04G011100 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-52
Identity = 118/225 (52.44%), Postives = 161/225 (71.56%), Query Frame = 1


Query: 200 NISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGDL 259
           N+S   +E DIKEF SFSG++  +++Q    N   AYVT++++QGA+TA+LL+GA I D 
Sbjct: 12  NLSSGATEHDIKEFFSFSGEVESIDIQ---SNEHSAYVTFKETQGAETAVLLSGASIADQ 71

Query: 260 FVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKAF 319
            V I L  NY  PP A  +  + + +       +AEDVVS+MLAKGFILGKDA+ KAKAF
Sbjct: 72  SVIIELAPNYS-PPAAPHA--ETQSSGAESVVQKAEDVVSSMLAKGFILGKDAVGKAKAF 131

Query: 320 DERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAEQ 379
           DE+   TS A+A VAS+D+K+G+++K+TAGT++VNEK++ +D+ FQVTE+TKS  A AEQ
Sbjct: 132 DEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTERTKSVYAAAEQ 191

Query: 380 KASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVE 425
             S+AG+A+M N YVLTG +W + A   V +AA EV Q TK KVE
Sbjct: 192 TVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVE 230

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BLAST of CmoCh04G011100 vs. TrEMBL
Match: A0A0A0KIR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G023900 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 1.3e-128
Identity = 251/270 (92.96%), Postives = 261/270 (96.67%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SNISK TSERDIKEF SFSG+ILYVEMQRE+ENTQVAYVTY+DSQGADTAILLTGAKIGD
Sbjct: 9   SNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAILLTGAKIGD 68

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKA 318
           L V+ITLVENYHLPPEAMSSILDKR+T T IAP+QAEDVVSTMLAKGFILGKDALNKAKA
Sbjct: 69  LSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGKDALNKAKA 128

Query: 319 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 378
           FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV EKTKSALAVAE
Sbjct: 129 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVREKTKSALAVAE 188

Query: 379 QKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESIYHER 438
           QKA++AGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEK+ESIY ER
Sbjct: 189 QKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRER 248

Query: 439 TGIINNFAEFHLDEPLPGEPAIVPVNSADR 469
           TGII+NFAE HLDEPLPGEPAIVPVNSADR
Sbjct: 249 TGIISNFAELHLDEPLPGEPAIVPVNSADR 278

[Close]

BLAST of CmoCh04G011100 vs. TrEMBL
Match: A0A061EAC5_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 3.1e-93
Identity = 189/269 (70.26%), Postives = 223/269 (82.90%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SNIS A S+RDIKEF SFSG I YVEM+RETEN QVAYVT++DSQGADTA+LLTGA I D
Sbjct: 8   SNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLTGATIVD 67

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKA 318
           L V+IT VE+Y LPPEA+ S ++ +   T     +AEDV+STMLAKGF+LGKDA+NKAKA
Sbjct: 68  LSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDAINKAKA 127

Query: 319 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 378
           FDER   TSNASA V SID+KMG++EK++ GTAVVNEK+REM+E+FQV+EKTKSA AVAE
Sbjct: 128 FDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKSAFAVAE 187

Query: 379 QKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESIYHER 438
           QKAS+AGTA+MSN YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEK+E IY ER
Sbjct: 188 QKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKEIIYRER 247

Query: 439 TGIINNFAEFHLDEPLPGEPAIVPVNSAD 468
           TGII++FA+FHLDE    EP IVPV+S D
Sbjct: 248 TGIISDFAQFHLDESSAAEPTIVPVDSTD 276

[Close]

BLAST of CmoCh04G011100 vs. TrEMBL
Match: A0A061E8Q5_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 3.1e-93
Identity = 189/269 (70.26%), Postives = 223/269 (82.90%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SNIS A S+RDIKEF SFSG I YVEM+RETEN QVAYVT++DSQGADTA+LLTGA I D
Sbjct: 37  SNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLTGATIVD 96

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKA 318
           L V+IT VE+Y LPPEA+ S ++ +   T     +AEDV+STMLAKGF+LGKDA+NKAKA
Sbjct: 97  LSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDAINKAKA 156

Query: 319 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 378
           FDER   TSNASA V SID+KMG++EK++ GTAVVNEK+REM+E+FQV+EKTKSA AVAE
Sbjct: 157 FDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKSAFAVAE 216

Query: 379 QKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESIYHER 438
           QKAS+AGTA+MSN YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEK+E IY ER
Sbjct: 217 QKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKEIIYRER 276

Query: 439 TGIINNFAEFHLDEPLPGEPAIVPVNSAD 468
           TGII++FA+FHLDE    EP IVPV+S D
Sbjct: 277 TGIISDFAQFHLDESSAAEPTIVPVDSTD 305

[Close]

BLAST of CmoCh04G011100 vs. TrEMBL
Match: W9RFG7_9ROSA (Protein vip1 OS=Morus notabilis GN=L484_006763 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 3.8e-91
Identity = 191/269 (71.00%), Postives = 228/269 (84.76%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           +NIS A SERDIKEF SFSG I YVEM+RE+E+TQ+AYVT++DSQGADTAILL+GA IG+
Sbjct: 37  NNISLAVSERDIKEFFSFSGDIQYVEMRRESESTQLAYVTFKDSQGADTAILLSGAVIGN 96

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKA 318
           L VSIT V++Y LPPEA+ S L+K  T T  A  +AEDVVS+MLAKGFILGKDA+NKAK+
Sbjct: 97  LSVSITPVDDYLLPPEALPSTLEKNPT-TSPAVKKAEDVVSSMLAKGFILGKDAINKAKS 156

Query: 319 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 378
           FDER  L SNASATVASID K+G++EK++ G AVVNEKVREMDE +QV+E TKSALAVAE
Sbjct: 157 FDERHHLMSNASATVASIDNKIGLSEKLSIGKAVVNEKVREMDERYQVSEMTKSALAVAE 216

Query: 379 QKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESIYHER 438
           QKAS+AG+ALMSN+YVLTGA+W S+A +A  KAAE+V+ MTK K+EKAEEEKEE IY ER
Sbjct: 217 QKASSAGSALMSNHYVLTGASWVSSAFSAFAKAAEDVSIMTKEKLEKAEEEKEEIIYRER 276

Query: 439 TGIINNFAEFHLDEPLPGEPAIVPVNSAD 468
           TGII++FA+ HLDE     P IVPV+SAD
Sbjct: 277 TGIISDFAQIHLDESSSKGPPIVPVSSAD 304

[Close]

BLAST of CmoCh04G011100 vs. TrEMBL
Match: A0A061E9N0_THECC (RNA-binding family protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.9e-90
Identity = 188/269 (69.89%), Postives = 219/269 (81.41%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SNIS A S+RDIKEF SFSG I YVEM+RETEN QVAYVT++DSQGADTA+LLTGA I D
Sbjct: 27  SNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLTGATIVD 86

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKA 318
           L V+IT VE+Y LPPEA+ S             + AEDV+STMLAKGF+LGKDA+NKAKA
Sbjct: 87  LSVNITPVEDYQLPPEALVS-------------NMAEDVMSTMLAKGFVLGKDAINKAKA 146

Query: 319 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 378
           FDER   TSNASA V SID+KMG++EK++ GTAVVNEK+REM+E+FQV+EKTKSA AVAE
Sbjct: 147 FDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKSAFAVAE 206

Query: 379 QKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESIYHER 438
           QKAS+AGTA+MSN YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEK+E IY ER
Sbjct: 207 QKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKEIIYRER 266

Query: 439 TGIINNFAEFHLDEPLPGEPAIVPVNSAD 468
           TGII++FA+FHLDE    EP IVPV+S D
Sbjct: 267 TGIISDFAQFHLDESSAAEPTIVPVDSTD 282

[Close]

BLAST of CmoCh04G011100 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 250.0 bits (637), Expect = 2.9e-66
Identity = 142/258 (55.04%), Postives = 183/258 (70.93%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SN+S   ++RD+KEF SFSG ILY+E Q ETE T++AYVT++D QGA+TA+LL+GA I D
Sbjct: 9   SNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGATIVD 68

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPS----QAEDVVSTMLAKGFILGKDALN 318
             V +++  +Y L PEA++S+  K    +  A      +AEDVVS+MLAKGFILGKDA+ 
Sbjct: 69  SSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGFILGKDAIA 128

Query: 319 KAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSAL 378
           KAK+ DE+ QLTS ASA VAS D+K+G T+KI  GT VV EKVRE+D+ +QV+EKTKSA+
Sbjct: 129 KAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQVSEKTKSAI 188

Query: 379 AVAEQKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESI 438
           A AEQ  SNAG+A+M N YVLTGA W + A   V KAAEEV Q  K KV  AEEE     
Sbjct: 189 AAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMAEEE----- 248

Query: 439 YHERTGIINNFAEFHLDE 453
             ++  +++ FA  HL E
Sbjct: 249 --DKRKVVDEFARVHLSE 259

[Close]

BLAST of CmoCh04G011100 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 246.5 bits (628), Expect = 3.2e-65
Identity = 138/262 (52.67%), Postives = 187/262 (71.37%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SN+S   +ERD+KEF SFSG I Y+E Q E + +++AYVT++D QGA+TA+LLTG+ I D
Sbjct: 9   SNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGSTIVD 68

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPSQ--------AEDVVSTMLAKGFILGK 318
             V++T+  +Y LPP+A++SI   +++    +P++        AEDVVS M++KGF+LGK
Sbjct: 69  SSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMISKGFVLGK 128

Query: 319 DALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKT 378
           DA+ KAK+ DE+ QLTS ASA V S D+++G TEKI  GT VV+EKV+E+D+ FQVTEKT
Sbjct: 129 DAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQKFQVTEKT 188

Query: 379 KSALAVAEQKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEK 438
           KSA+A AEQ  SNAG+A+M N YVLTGA W + A   V+KAAEEV Q  K KV  AEEE+
Sbjct: 189 KSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEKVGLAEEEE 248

Query: 439 EESIYHERTGIINNFAEFHLDE 453
           E     E+  +++  A  HL E
Sbjct: 249 E-----EKKKVVDEVAIVHLTE 265

[Close]

BLAST of CmoCh04G011100 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 240.0 bits (611), Expect = 3.0e-63
Identity = 144/266 (54.14%), Postives = 187/266 (70.30%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SN+S   S++D+KEF SFSG I YVEM+ ET+ +QVAYVT++DSQGA+TA+LLTGA I D
Sbjct: 34  SNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLTGAVIAD 93

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATR-IAPSQAEDVVSTMLAKGFILGKDALNKAK 318
           L VSIT   NY LPPEA++  LD ++ +    +  +AEDVV+ M+ +G+ LGKDA+ KAK
Sbjct: 94  LRVSITPAVNYQLPPEALA--LDSQEHSFNGFSVKKAEDVVNIMVGRGYALGKDAMEKAK 153

Query: 319 AFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVA 378
           AFD+R  L SNASAT+AS+D KMG++EK++ GT VVNEK+R++DE +QV E TKSALA A
Sbjct: 154 AFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDERYQVREITKSALAAA 213

Query: 379 EQKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESIYHE 438
           E+ A +A TALM+N YV +GA+WFSNA  AVTKA +E       KVE   E ++E I   
Sbjct: 214 EETAISARTALMANPYVSSGASWFSNAFGAVTKAVKE-------KVENGGEGRKEII--- 273

Query: 439 RTGIINNFAEFHLDEPLPGEPAIVPV 464
                       LD   P  PA+VPV
Sbjct: 274 -----------TLDPSSPKVPAVVPV 276

[Close]

BLAST of CmoCh04G011100 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 210.3 bits (534), Expect = 2.6e-54
Identity = 118/225 (52.44%), Postives = 163/225 (72.44%), Query Frame = 1


Query: 200 NISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGDL 259
           N+S   +E DIKEF SFSG++  +++Q   E++  AYVT++++QGA+TA+LL+GA I D 
Sbjct: 12  NLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLSGASIADQ 71

Query: 260 FVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKAF 319
            V I L  NY  PP A  +  + + +       +AEDVVS+MLAKGFILGKDA+ KAKAF
Sbjct: 72  SVIIELAPNYS-PPAAPHA--ETQSSGAESVVQKAEDVVSSMLAKGFILGKDAVGKAKAF 131

Query: 320 DERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAEQ 379
           DE+   TS A+A VAS+D+K+G+++K+TAGT++VNEK++ +D+ FQVTE+TKS  A AEQ
Sbjct: 132 DEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTERTKSVYAAAEQ 191

Query: 380 KASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVE 425
             S+AG+A+M N YVLTG +W + A   V +AA EV Q TK KVE
Sbjct: 192 TVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVE 231

[Close]

BLAST of CmoCh04G011100 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 178.7 bits (452), Expect = 8.2e-45
Identity = 105/245 (42.86%), Postives = 157/245 (64.08%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           +N+S   +ER+I EF SFSG I ++E+Q+E   +++A+VT+ D +  + A+LL+GA I D
Sbjct: 10  NNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLSGATIVD 69

Query: 259 LFVSITLVENY---------HLPPEAMSSILDKRKTAT--------RIAPSQAEDVVSTM 318
             V+IT  ENY          +   AM   L +  T T        R   S+A+DVV+T+
Sbjct: 70  QIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKAQDVVATV 129

Query: 319 LAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMD 378
           LAKG  LG+DA+NKAKAFDE+ QL +NASA V+S D+++G+TEK++ G + VNEKV+ +D
Sbjct: 130 LAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISAVNEKVKSVD 189

Query: 379 EMFQVTEKTKSALAVAEQKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKA 427
           +  QV++KT +A+  AE+K ++ G+A+ S+ YV  GAAWFS A + V +  +     TK 
Sbjct: 190 QKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVGQVAGSKTKE 249

[Close]

BLAST of CmoCh04G011100 vs. NCBI nr
Match: gi|659103004|ref|XP_008452424.1| (PREDICTED: protein vip1-like isoform X2 [Cucumis melo])

HSP 1 Score: 468.8 bits (1205), Expect = 1.1e-128
Identity = 251/270 (92.96%), Postives = 261/270 (96.67%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SNISK TSERDIKEF SFSG+ILYVEMQRE+ENTQVAYVTY+DSQGADTAILLTGAKIGD
Sbjct: 7   SNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAILLTGAKIGD 66

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKA 318
           L V+ITLVENYHLPPEAMSSILDKR+T T IAP+QAEDVVSTMLAKGFILGKDALNKAKA
Sbjct: 67  LSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGKDALNKAKA 126

Query: 319 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 378
           FDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE
Sbjct: 127 FDERLQFTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 186

Query: 379 QKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESIYHER 438
           QKA++AGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEK+ESIY ER
Sbjct: 187 QKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRER 246

Query: 439 TGIINNFAEFHLDEPLPGEPAIVPVNSADR 469
           TGII+NFAE HLDEPLPGEPAIVPVNSADR
Sbjct: 247 TGIISNFAELHLDEPLPGEPAIVPVNSADR 276

[Close]

BLAST of CmoCh04G011100 vs. NCBI nr
Match: gi|659103002|ref|XP_008452423.1| (PREDICTED: protein vip1-like isoform X1 [Cucumis melo])

HSP 1 Score: 468.8 bits (1205), Expect = 1.1e-128
Identity = 251/270 (92.96%), Postives = 261/270 (96.67%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SNISK TSERDIKEF SFSG+ILYVEMQRE+ENTQVAYVTY+DSQGADTAILLTGAKIGD
Sbjct: 9   SNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAILLTGAKIGD 68

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKA 318
           L V+ITLVENYHLPPEAMSSILDKR+T T IAP+QAEDVVSTMLAKGFILGKDALNKAKA
Sbjct: 69  LSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGKDALNKAKA 128

Query: 319 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 378
           FDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE
Sbjct: 129 FDERLQFTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 188

Query: 379 QKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESIYHER 438
           QKA++AGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEK+ESIY ER
Sbjct: 189 QKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRER 248

Query: 439 TGIINNFAEFHLDEPLPGEPAIVPVNSADR 469
           TGII+NFAE HLDEPLPGEPAIVPVNSADR
Sbjct: 249 TGIISNFAELHLDEPLPGEPAIVPVNSADR 278

[Close]

BLAST of CmoCh04G011100 vs. NCBI nr
Match: gi|449449026|ref|XP_004142266.1| (PREDICTED: uncharacterized protein LOC101203394 [Cucumis sativus])

HSP 1 Score: 468.0 bits (1203), Expect = 1.9e-128
Identity = 251/270 (92.96%), Postives = 261/270 (96.67%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SNISK TSERDIKEF SFSG+ILYVEMQRE+ENTQVAYVTY+DSQGADTAILLTGAKIGD
Sbjct: 9   SNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAILLTGAKIGD 68

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKA 318
           L V+ITLVENYHLPPEAMSSILDKR+T T IAP+QAEDVVSTMLAKGFILGKDALNKAKA
Sbjct: 69  LSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGKDALNKAKA 128

Query: 319 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 378
           FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV EKTKSALAVAE
Sbjct: 129 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVREKTKSALAVAE 188

Query: 379 QKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESIYHER 438
           QKA++AGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEK+ESIY ER
Sbjct: 189 QKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRER 248

Query: 439 TGIINNFAEFHLDEPLPGEPAIVPVNSADR 469
           TGII+NFAE HLDEPLPGEPAIVPVNSADR
Sbjct: 249 TGIISNFAELHLDEPLPGEPAIVPVNSADR 278

[Close]

BLAST of CmoCh04G011100 vs. NCBI nr
Match: gi|590697684|ref|XP_007045509.1| (RNA-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 350.5 bits (898), Expect = 4.5e-93
Identity = 189/269 (70.26%), Postives = 223/269 (82.90%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SNIS A S+RDIKEF SFSG I YVEM+RETEN QVAYVT++DSQGADTA+LLTGA I D
Sbjct: 37  SNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLTGATIVD 96

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKA 318
           L V+IT VE+Y LPPEA+ S ++ +   T     +AEDV+STMLAKGF+LGKDA+NKAKA
Sbjct: 97  LSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDAINKAKA 156

Query: 319 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 378
           FDER   TSNASA V SID+KMG++EK++ GTAVVNEK+REM+E+FQV+EKTKSA AVAE
Sbjct: 157 FDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKSAFAVAE 216

Query: 379 QKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESIYHER 438
           QKAS+AGTA+MSN YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEK+E IY ER
Sbjct: 217 QKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKEIIYRER 276

Query: 439 TGIINNFAEFHLDEPLPGEPAIVPVNSAD 468
           TGII++FA+FHLDE    EP IVPV+S D
Sbjct: 277 TGIISDFAQFHLDESSAAEPTIVPVDSTD 305

[Close]

BLAST of CmoCh04G011100 vs. NCBI nr
Match: gi|590697687|ref|XP_007045510.1| (RNA-binding family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 350.5 bits (898), Expect = 4.5e-93
Identity = 189/269 (70.26%), Postives = 223/269 (82.90%), Query Frame = 1


Query: 199 SNISKATSERDIKEFLSFSGQILYVEMQRETENTQVAYVTYEDSQGADTAILLTGAKIGD 258
           SNIS A S+RDIKEF SFSG I YVEM+RETEN QVAYVT++DSQGADTA+LLTGA I D
Sbjct: 8   SNISLAASQRDIKEFFSFSGDIQYVEMRRETENAQVAYVTFKDSQGADTAMLLTGATIVD 67

Query: 259 LFVSITLVENYHLPPEAMSSILDKRKTATRIAPSQAEDVVSTMLAKGFILGKDALNKAKA 318
           L V+IT VE+Y LPPEA+ S ++ +   T     +AEDV+STMLAKGF+LGKDA+NKAKA
Sbjct: 68  LSVNITPVEDYQLPPEALVSNMENKPAVTDSTVKKAEDVMSTMLAKGFVLGKDAINKAKA 127

Query: 319 FDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVTEKTKSALAVAE 378
           FDER   TSNASA V SID+KMG++EK++ GTAVVNEK+REM+E+FQV+EKTKSA AVAE
Sbjct: 128 FDERHHFTSNASAAVTSIDQKMGLSEKLSIGTAVVNEKMREMNEIFQVSEKTKSAFAVAE 187

Query: 379 QKASNAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKEESIYHER 438
           QKAS+AGTA+MSN YV TGA W SNA +AV KAAE+V  +TK KVEKAEEEK+E IY ER
Sbjct: 188 QKASSAGTAIMSNRYVSTGALWLSNAFSAVAKAAEDVGMLTKEKVEKAEEEKKEIIYRER 247

Query: 439 TGIINNFAEFHLDEPLPGEPAIVPVNSAD 468
           TGII++FA+FHLDE    EP IVPV+S D
Sbjct: 248 TGIISDFAQFHLDESSAAEPTIVPVDSTD 276

The following BLAST results are available for this feature:

BLAST of CmoCh04G011100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BPA1_ARATH	1.3e-52	52.44	Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1	[more]

BLAST of CmoCh04G011100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIR7_CUCSA	1.3e-128	92.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G023900 PE=4 SV=1	[more]
A0A061EAC5_THECC	3.1e-93	70.26	RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1	[more]
A0A061E8Q5_THECC	3.1e-93	70.26	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_011268 PE=4 SV=1	[more]
W9RFG7_9ROSA	3.8e-91	71.00	Protein vip1 OS=Morus notabilis GN=L484_006763 PE=4 SV=1	[more]
A0A061E9N0_THECC	1.9e-90	69.89	RNA-binding family protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_011268...	[more]

BLAST of CmoCh04G011100 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17720.1	2.9e-66	55.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	3.2e-65	52.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G67950.3	3.0e-63	54.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	2.6e-54	52.44	binding partner of acd11 1	[more]
AT5G32450.1	8.2e-45	42.86	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmoCh04G011100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103004\|ref\|XP_008452424.1\|	1.1e-128	92.96	PREDICTED: protein vip1-like isoform X2 [Cucumis melo]	[more]
gi\|659103002\|ref\|XP_008452423.1\|	1.1e-128	92.96	PREDICTED: protein vip1-like isoform X1 [Cucumis melo]	[more]
gi\|449449026\|ref\|XP_004142266.1\|	1.9e-128	92.96	PREDICTED: uncharacterized protein LOC101203394 [Cucumis sativus]	[more]
gi\|590697684\|ref\|XP_007045509.1\|	4.5e-93	70.26	RNA-binding family protein isoform 1 [Theobroma cacao]	[more]
gi\|590697687\|ref\|XP_007045510.1\|	4.5e-93	70.26	RNA-binding family protein isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000315	Znf_B-box
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G011100.1	CmoCh04G011100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	PROFILE	PS50119	ZF_BBOX	coord: 18..63 score: 8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 200..258 score: 5.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 199..268 score: 8
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 200..258 score: 1.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 199..268 score: 2.4
None	No IPR available	unknown	Coil	Coil	coord: 409..431 scor
None	No IPR available	PANTHER	PTHR31065	FAMILY NOT NAMED	coord: 6..405 score: 1.3
None	No IPR available	PANTHER	PTHR31065:SF15	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 6..405 score: 1.3
None	No IPR available	unknown	SSF57845	B-box zinc-binding domain	coord: 16..52 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G011100	Cucsa.174090	Cucumber (Gy14) v1	cgycmoB0495
CmoCh04G011100	CmaCh04G010380	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G011100	CmaCh04G000830	Cucurbita maxima (Rimu)	cmacmoB730
CmoCh04G011100	Cla002205	Watermelon (97103) v1	cmowmB677
CmoCh04G011100	Csa5G023890	Cucumber (Chinese Long) v2	cmocuB725
CmoCh04G011100	MELO3C016673	Melon (DHL92) v3.5.1	cmomeB699
CmoCh04G011100	ClCG07G005450	Watermelon (Charleston Gray)	cmowcgB675
CmoCh04G011100	CSPI05G00640	Wild cucumber (PI 183967)	cmocpiB732
CmoCh04G011100	Lsi04G009920	Bottle gourd (USVL1VR-Ls)	cmolsiB662
CmoCh04G011100	Cp4.1LG01g07350	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G011100	Cp4.1LG01g06000	Cucurbita pepo (Zucchini)	cmocpeB675
CmoCh04G011100	MELO3C016673.2	Melon (DHL92) v3.6.1	cmomedB793
CmoCh04G011100	CsaV3_5G014500	Cucumber (Chinese Long) v3	cmocucB0857
CmoCh04G011100	Cla97C07G133770	Watermelon (97103) v2	cmowmbB754
CmoCh04G011100	Bhi07G000375	Wax gourd	cmowgoB0888
CmoCh04G011100	CsGy5G010900	Cucumber (Gy14) v2	cgybcmoB638
CmoCh04G011100	Carg27433	Silver-seed gourd	carcmoB1306
CmoCh04G011100	Carg00147	Silver-seed gourd	carcmoB0923

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G011100	CmoCh04G000810	Cucurbita moschata (Rifu)	cmocmoB464

The following block(s) are covering this gene:

None