Cp4.1LG01g00780 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g00780
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L10
Location	Cp4.1LG01 : 3400766 .. 3402765 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGGGTGAAAAACGAAGGAAGGCGGGATAATACGTGTTGTTCAAGTAGGAAAAAAAGGGCATTCGGCCCAATTTCTCCGTCCAAATCTGCTATAAAAAGGTTTAACAGCCACATTGAATCGCTGAATCTCGTCGCGCCGCCGCCACTTCTACAACTCATCTCTCTGTCGGTGGTACGGTAGCTATTTTTTCTTTGTTTCTTTTCGTTGTAATCTTTTGTTCGATGGAATTTTTCATGTTTGTAATTTTCTGAACCCGAAACTAGTCATTGCGGTGTTAGCGTTGCATTTTGAAATCGGAGATTAGTTTTTGTCTTGAGTATGGATCTGGAGCATTTTAGGGTAACCTATCCTGCGAGCATTGTGGTTAATGATGATAGTAGTTGAAAAATGAATGAAATGATTTGTTCTCTAAGTGAAAAATAAAATGTGCAAAATGGGATTTGGTATGGTTGCATTTTCTTGGCCTCTGTTTCGTAGATTGAAGGGAGGACCATGAAGAATGAAATTGGCTGATCTTGTGCAACCCATGACTGCCCAGATTTGTACTGCTGGTGGTCAATATTCGCCTGGACATGATGTTTGCCTTACTCATCTGAGTCTCTTCCCATCACACCAATAAATTTGATAGTCTATGTTTTTGTATTGATGGATTTTTGCTCTAGTTATTGGCACCGTTGTTTTTGTATTGAGTTTGTTTATGTATGCCCCCTTGAGTTTAACCAGGGGATTTGAATTATGATGCACTAAAGAGTTGACAAAAAAAACTTTTGGTTCAGTTGGATTGGATCAGGGCATCATATTATTAAGATATTAAAGGTTGGGTTGTGTCATAAACTAGTTTCAGAAATTATTATACGGTAGCTTCTGTGTCATATAATTAAGGACGAGTGGAAGGTGATGATTGAAGCAGGTACTTATGATAATCAAGCATATCTTATTGTTCTCCTGGTGCGGCTACGTGTAGTTGTGCCGAGCTTCAAGGATATGTCTGTATGATTTACAAGACTGCTCTCTGATTCATTCTCTGTTCATTATATTTTATGATTAGTGGCCAAGACAATGTTCTGCCTTTGTCCATACAAGGTCGACTGGTCAATTTACATCTGGACTTAAATCTCACAAGCTGAATTTTGTGTCACCTGTTATCTTAGTTATGAGGCTAAGCTGGATGCAGCTTTTTTTGAGGCCACAAGTGAAGGGAAAATAGGAATATGGATGTTTAGGATTTTTTGGAGAAATTTCAATTTGTCATTTAGTTTTGGGTATTTTCCATTGTACTTTTTCTTGATATTGTTTTATTTTCTTACAACTACGCAGGTCAAGTTCAAGCACACACAATGGGGAGAAGACCTGCTAGATGTTACCGACAGATTAAAAACAAACCGTACCCTAAGTCACGATTTTGCCGTGGTGTACCTGATCCTAAGATCAGAATCTATGACGTGGGAATGAAAAGGAAAGGAGTAGATGAATTTCCATTCTGTGTCCACCTCGTGAGTTGGGAGAAAGAAAATGTGTCAAGTGAAGCTTTAGAAGCAGCTAGGATTGCCTGCAATAAGTATATGACCAAGTTTGCTGGGAAGGATGCATTCCATTTGAGGGTCAGGGTGCACCCCTTCCATGTTCTGCGGATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAAACCGGCATGAGAGGTGCATTTGGGAAGCCACAGGGAACCTGTGCGAGAGTGGCCATTGGTCAGGTTCTCCTTTCAGTTCGCTGCAAGGACAACAACGGTCAAAACGCACAGGAGGCGCTCCGCCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAATTCAGCCGAGCTGATTACCTGAAGTTCAAGGCAGAGAACAAGATTCTTCCAGATGGTGTGAATGCCAAGCTTCTTGGATGCCATGGGCCTCTAGCCAACCGTCAGCCTGGAAGAGCTTTTCTGTCTCAAGCTGCT

mRNA sequence

AGAAGGGTGAAAAACGAAGGAAGGCGGGATAATACGTGTTGTTCAAGTAGGAAAAAAAGGGCATTCGGCCCAATTTCTCCGTCCAAATCTGCTATAAAAAGGTTTAACAGCCACATTGAATCGCTGAATCTCGTCGCGCCGCCGCCACTTCTACAACTCATCTCTCTGTCGGTGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAAACCGGCATGAGAGGTGCATTTGGGAAGCCACAGGGAACCTGTGCGAGAGTGGCCATTGGTCAGGTTCTCCTTTCAGTTCGCTGCAAGGACAACAACGGTCAAAACGCACAGGAGGCGCTCCGCCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAATTCAGCCGAGCTGATTACCTGAAGTTCAAGGCAGAGAACAAGATTCTTCCAGATGGTGTGAATGCCAAGCTTCTTGGATGCCATGGGCCTCTAGCCAACCGTCAGCCTGGAAGAGCTTTTCTGTCTCAAGCTGCT

Coding sequence (CDS)

AGAAGGGTGAAAAACGAAGGAAGGCGGGATAATACGTGTTGTTCAAGTAGGAAAAAAAGGGCATTCGGCCCAATTTCTCCGTCCAAATCTGCTATAAAAAGGTTTAACAGCCACATTGAATCGCTGAATCTCGTCGCGCCGCCGCCACTTCTACAACTCATCTCTCTGTCGGTGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAAACCGGCATGAGAGGTGCATTTGGGAAGCCACAGGGAACCTGTGCGAGAGTGGCCATTGGTCAGGTTCTCCTTTCAGTTCGCTGCAAGGACAACAACGGTCAAAACGCACAGGAGGCGCTCCGCCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAATTCAGCCGAGCTGATTACCTGAAGTTCAAGGCAGAGAACAAGATTCTTCCAGATGGTGTGAATGCCAAGCTTCTTGGATGCCATGGGCCTCTAGCCAACCGTCAGCCTGGAAGAGCTTTTCTGTCTCAAGCTGCT

Protein sequence

RRVKNEGRRDNTCCSSRKKRAFGPISPSKSAIKRFNSHIESLNLVAPPPLLQLISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQAA

Homology

[Close]

BLAST of Cp4.1LG01g00780 vs. Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-55
Identity = 104/124 (83.87%), Postives = 114/124 (91.94%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD N  +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKFSR DYLK+K+EN+I+PDGVNAKLLG HGPLA RQPGRAF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAF 215

Query: 173 LSQA 177
           LS +
Sbjct: 216 LSSS 219

[Close]

BLAST of Cp4.1LG01g00780 vs. Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-55
Identity = 100/122 (81.97%), Postives = 115/122 (94.26%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD N  +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFP RQKIIVSRKWGFTKF+R DY+K+K++N+ILPDGVNAKLLGCHGPLANRQPG+AF
Sbjct: 156 KFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAF 215

Query: 173 LS 175
           ++
Sbjct: 216 IN 217

[Close]

BLAST of Cp4.1LG01g00780 vs. Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.4e-55
Identity = 103/125 (82.40%), Postives = 113/125 (90.40%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKDNN  NAQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTK +RADY + K+EN+ILPDGVNAKLLGCHG LANR+PGRAF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAF 215

Query: 173 LSQAA 178
           +   A
Sbjct: 216 IDAVA 220

[Close]

BLAST of Cp4.1LG01g00780 vs. Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.6e-54
Identity = 102/121 (84.30%), Postives = 111/121 (91.74%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD N  +AQEALRRA
Sbjct: 25  VLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRA 84

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFP RQKIIVSRKWGFTKFSR DYLK+K+EN+I+PDGVNAKLLGCHG LA RQPGRAF
Sbjct: 85  KFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAF 144

Query: 173 L 174
           L
Sbjct: 145 L 145

[Close]

BLAST of Cp4.1LG01g00780 vs. Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 8.5e-53
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD +G +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKF+RADY K + E +I+PDGVNAK L CHGPLANRQPG AF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAF 215

Query: 173 LSQAA 178
           LS  A
Sbjct: 216 LSAGA 220

[Close]

BLAST of Cp4.1LG01g00780 vs. TrEMBL
Match: A0A0A0KYV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081250 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.3e-60
Identity = 116/125 (92.80%), Postives = 121/125 (96.80%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKDNNGQNAQEALRRA
Sbjct: 21  VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRA 80

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKFSRADYLK+KAENKILPDGVNAKLLGCHGPLANRQPGRAF
Sbjct: 81  KFKFPGRQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAF 140

Query: 173 LSQAA 178
           LSQ A
Sbjct: 141 LSQNA 145

[Close]

BLAST of Cp4.1LG01g00780 vs. TrEMBL
Match: A0A0A0LN38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336100 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 7.2e-59
Identity = 112/123 (91.06%), Postives = 120/123 (97.56%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD+N Q+AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKFSRADYLKFK+ENKI+PDGVNAKLLGCHGPLANRQPGRAF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAF 215

Query: 173 LSQ 176
           LSQ
Sbjct: 216 LSQ 218

[Close]

BLAST of Cp4.1LG01g00780 vs. TrEMBL
Match: A0A0A0KVY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G645120 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 7.2e-59
Identity = 113/124 (91.13%), Postives = 120/124 (96.77%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD+N Q+AQEALRRA
Sbjct: 21  VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRA 80

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKFSRADYL +KAENKILPDGVNAKLLGCHGPLANRQPGRAF
Sbjct: 81  KFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKLLGCHGPLANRQPGRAF 140

Query: 173 LSQA 177
           LSQA
Sbjct: 141 LSQA 144

[Close]

BLAST of Cp4.1LG01g00780 vs. TrEMBL
Match: V7ARW6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G042100g PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.7e-58
Identity = 110/124 (88.71%), Postives = 119/124 (95.97%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD+N  NAQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHNAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKFSR+DYLKFK+EN+I+PDGVNAKLLGCHGPLANRQPGRAF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFSRSDYLKFKSENRIMPDGVNAKLLGCHGPLANRQPGRAF 215

Query: 173 LSQA 177
           LS A
Sbjct: 216 LSSA 219

[Close]

BLAST of Cp4.1LG01g00780 vs. TrEMBL
Match: A0A151U0G2_CAJCA (60S ribosomal protein L10 OS=Cajanus cajan GN=KK1_005351 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.2e-57
Identity = 109/118 (92.37%), Postives = 115/118 (97.46%), Query Frame = 1


Query: 59  MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 118
           MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD+N  +AQEALRRAKFKFPG
Sbjct: 1   MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 60

Query: 119 RQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQA 177
           RQKIIVSRKWGFTKFSR+DYLKFK+EN+ILPDGVNAKLLGCHGPLANRQPGRAFL+ A
Sbjct: 61  RQKIIVSRKWGFTKFSRSDYLKFKSENRILPDGVNAKLLGCHGPLANRQPGRAFLNTA 118

[Close]

BLAST of Cp4.1LG01g00780 vs. TAIR10
Match: AT1G26910.1 (AT1G26910.1 Ribosomal protein L16p/L10e family protein)

HSP 1 Score: 208.0 bits (528), Expect = 4.8e-54
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD +G +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKF+RADY K + E +I+PDGVNAK L CHGPLANRQPG AF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAF 215

Query: 173 LSQAA 178
           LS  A
Sbjct: 216 LSAGA 220

[Close]

BLAST of Cp4.1LG01g00780 vs. TAIR10
Match: AT1G14320.1 (AT1G14320.1 Ribosomal protein L16p/L10e family protein)

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-52
Identity = 96/121 (79.34%), Postives = 108/121 (89.26%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD +G +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKF+RAD+ K + E +++PDGVNAK L CHGPLANRQPG AF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAF 215

Query: 173 L 174
           L
Sbjct: 216 L 216

[Close]

BLAST of Cp4.1LG01g00780 vs. TAIR10
Match: AT1G66580.1 (AT1G66580.1 senescence associated gene 24)

HSP 1 Score: 201.8 bits (512), Expect = 3.4e-52
Identity = 97/122 (79.51%), Postives = 109/122 (89.34%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKDN+G +AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKF+RA+Y K +A  +I+PDGVNAK L  HGPLANRQPG AF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAF 215

Query: 173 LS 175
           +S
Sbjct: 216 IS 217

[Close]

BLAST of Cp4.1LG01g00780 vs. NCBI nr
Match: gi|659101772|ref|XP_008451785.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 1.9e-60
Identity = 116/125 (92.80%), Postives = 121/125 (96.80%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKDNNGQNAQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKFSRADYLK+KAENKILPDGVNAKLLGCHGPLANRQPGRAF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAF 215

Query: 173 LSQAA 178
           LSQ A
Sbjct: 216 LSQTA 220

[Close]

BLAST of Cp4.1LG01g00780 vs. NCBI nr
Match: gi|449438947|ref|XP_004137249.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 3.2e-60
Identity = 116/125 (92.80%), Postives = 121/125 (96.80%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKDNNGQNAQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKFSRADYLK+KAENKILPDGVNAKLLGCHGPLANRQPGRAF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAF 215

Query: 173 LSQAA 178
           LSQ A
Sbjct: 216 LSQNA 220

[Close]

BLAST of Cp4.1LG01g00780 vs. NCBI nr
Match: gi|700198389|gb|KGN53547.1| (hypothetical protein Csa_4G081250 [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 3.2e-60
Identity = 116/125 (92.80%), Postives = 121/125 (96.80%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKDNNGQNAQEALRRA
Sbjct: 21  VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRA 80

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKFSRADYLK+KAENKILPDGVNAKLLGCHGPLANRQPGRAF
Sbjct: 81  KFKFPGRQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAF 140

Query: 173 LSQAA 178
           LSQ A
Sbjct: 141 LSQNA 145

[Close]

BLAST of Cp4.1LG01g00780 vs. NCBI nr
Match: gi|449447509|ref|XP_004141510.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 1.0e-58
Identity = 113/124 (91.13%), Postives = 120/124 (96.77%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD+N Q+AQEALRRA
Sbjct: 96  VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRA 155

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKFSRADYL +KAENKILPDGVNAKLLGCHGPLANRQPGRAF
Sbjct: 156 KFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKLLGCHGPLANRQPGRAF 215

Query: 173 LSQA 177
           LSQA
Sbjct: 216 LSQA 219

[Close]

BLAST of Cp4.1LG01g00780 vs. NCBI nr
Match: gi|700197410|gb|KGN52587.1| (hypothetical protein Csa_5G645120 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 1.0e-58
Identity = 113/124 (91.13%), Postives = 120/124 (96.77%), Query Frame = 1


Query: 53  LISLSVMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRA 112
           ++ ++ MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD+N Q+AQEALRRA
Sbjct: 21  VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRA 80

Query: 113 KFKFPGRQKIIVSRKWGFTKFSRADYLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAF 172
           KFKFPGRQKIIVSRKWGFTKFSRADYL +KAENKILPDGVNAKLLGCHGPLANRQPGRAF
Sbjct: 81  KFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKLLGCHGPLANRQPGRAF 140

Query: 173 LSQA 177
           LSQA
Sbjct: 141 LSQA 144

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL10_SOLME	1.4e-55	83.87	60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1	[more]
RL10_VITRI	1.4e-55	81.97	60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1	[more]
RL10_EUPES	2.4e-55	82.40	60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1	[more]
RL10_TOBAC	2.6e-54	84.30	60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1	[more]
RL102_ARATH	8.5e-53	80.00	60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2	[more]

BLAST of Cp4.1LG01g00780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYV1_CUCSA	2.3e-60	92.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081250 PE=4 SV=1	[more]
A0A0A0LN38_CUCSA	7.2e-59	91.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336100 PE=4 SV=1	[more]
A0A0A0KVY2_CUCSA	7.2e-59	91.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G645120 PE=4 SV=1	[more]
V7ARW6_PHAVU	4.7e-58	88.71	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G042100g PE=4 SV=1	[more]
A0A151U0G2_CAJCA	5.2e-57	92.37	60S ribosomal protein L10 OS=Cajanus cajan GN=KK1_005351 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g00780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26910.1	4.8e-54	80.00	Ribosomal protein L16p/L10e family protein	[more]
AT1G14320.1	1.2e-52	79.34	Ribosomal protein L16p/L10e family protein	[more]
AT1G66580.1	3.4e-52	79.51	senescence associated gene 24	[more]

BLAST of Cp4.1LG01g00780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101772\|ref\|XP_008451785.1\|	1.9e-60	92.80	PREDICTED: 60S ribosomal protein L10-like [Cucumis melo]	[more]
gi\|449438947\|ref\|XP_004137249.1\|	3.2e-60	92.80	PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus]	[more]
gi\|700198389\|gb\|KGN53547.1\|	3.2e-60	92.80	hypothetical protein Csa_4G081250 [Cucumis sativus]	[more]
gi\|449447509\|ref\|XP_004141510.1\|	1.0e-58	91.13	PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus]	[more]
gi\|700197410\|gb\|KGN52587.1\|	1.0e-58	91.13	hypothetical protein Csa_5G645120 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018255	Ribosomal_L10e_CS
IPR016180	Ribosomal_L10e/L16

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00780.1	Cp4.1LG01g00780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016180	Ribosomal protein L10e/L16	GENE3D	G3DSA:3.90.1170.10		coord: 54..130 score: 6.5
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 61..123 score: 1.2
IPR016180	Ribosomal protein L10e/L16	unknown	SSF54686	Ribosomal protein L16p/L10e	coord: 52..133 score: 3.92
IPR018255	Ribosomal protein L10e, conserved site	PROSITE	PS01257	RIBOSOMAL_L10E	coord: 65..86 scor
None	No IPR available	PANTHER	PTHR11726	60S RIBOSOMAL PROTEIN L10	coord: 59..173 score: 1.7E
None	No IPR available	PANTHER	PTHR11726:SF15	SUBFAMILY NOT NAMED	coord: 59..173 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g00780	Cucsa.273930	Cucumber (Gy14) v1	cgycpeB0719
Cp4.1LG01g00780	CmaCh16G004510	Cucurbita maxima (Rimu)	cmacpeB353
Cp4.1LG01g00780	CmaCh04G006510	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g00780	CmoCh04G007000	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g00780	CmoCh16G004870	Cucurbita moschata (Rifu)	cmocpeB315
Cp4.1LG01g00780	Cla005395	Watermelon (97103) v1	cpewmB419
Cp4.1LG01g00780	Csa4G081250	Cucumber (Chinese Long) v2	cpecuB399
Cp4.1LG01g00780	MELO3C016148	Melon (DHL92) v3.5.1	cpemeB423
Cp4.1LG01g00780	ClCG07G010440	Watermelon (Charleston Gray)	cpewcgB411
Cp4.1LG01g00780	CSPI04G07660	Wild cucumber (PI 183967)	cpecpiB396
Cp4.1LG01g00780	Lsi07G008610	Bottle gourd (USVL1VR-Ls)	cpelsiB372
Cp4.1LG01g00780	MELO3C016148.2	Melon (DHL92) v3.6.1	cpemedB495
Cp4.1LG01g00780	CsaV3_4G007890	Cucumber (Chinese Long) v3	cpecucB0496
Cp4.1LG01g00780	Bhi01G002449	Wax gourd	cpewgoB0509
Cp4.1LG01g00780	CsGy4G007570	Cucumber (Gy14) v2	cgybcpeB501

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g00780	Cp4.1LG14g03390	Cucurbita pepo (Zucchini)	cpecpeB236

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g00780	Cucumber (Gy14) v1	cgycpeB0718
Cp4.1LG01g00780	Bottle gourd (USVL1VR-Ls)	cpelsiB381
Cp4.1LG01g00780	Melon (DHL92) v3.6.1	cpemedB491
Cp4.1LG01g00780	Silver-seed gourd	carcpeB0061
Cp4.1LG01g00780	Silver-seed gourd	carcpeB0929