CmoCh16G004870 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G004870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60S ribosomal L10
LocationCmo_Chr16 : 2336219 .. 2336881 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGAAGACCGGCTAGGTGTTACAGACAGATTAAAAACAAACCATACCCCAAGTCTCGATTTTGTCGTGGTGTCCCCGATCCCAAGATTAGGATCTATGATGTTGGCATGAAAAGGAAAGGAGTTGATGAATTTCCATTCTGTGTCCACCTTGTGAGTTGGGAGAAAGAAAATGTGTCAAGTGAGGCTTTGGAAGCAGCTAGGATTGCCTGCAATAAGTATATGACCAAGTTTGCAGGGAAGGATGCGTTCCATTTGAGGGTTCGGGTGCACCCGTTCCATGTTCTACGTATTAACAAGATGCTTTCGTGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGTGCATTTGGCAAACCACTAGGAACCTGTGCGAGGGTGGACATCGGTCAGGTTCTCCTTTCGGTTCGCTGCAAGGACAACAACGGACAGAATGCGCAGGAGGCTCTCCGCCGAGCTAAGTTCAAGTTTCCTGGTCGTCAGAAGATCATTGTAAGCAGGAAGTGGGGGTTCACTAAATTCAGCCGAGCTGAGTATCTAAAGTACAAGGCGGAGAACAAGATTCTTCCTGATGGTGTTAACGCAAAGCTTCTTGGTTGCCATGGGCCTCTTGCTAACCGTCAGCCTGGAAGAGCTTTTCTATCTCAAACTGCATAG

mRNA sequence

ATGGGGAGAAGACCGGCTAGGTGTTACAGACAGATTAAAAACAAACCATACCCCAAGTCTCGATTTTGTCGTGGTGTCCCCGATCCCAAGATTAGGATCTATGATGTTGGCATGAAAAGGAAAGGAGTTGATGAATTTCCATTCTGTGTCCACCTTGTGAGTTGGGAGAAAGAAAATGTGTCAAGTGAGGCTTTGGAAGCAGCTAGGATTGCCTGCAATAAGTATATGACCAAGTTTGCAGGGAAGGATGCGTTCCATTTGAGGGTTCGGGTGCACCCGTTCCATGTTCTACGTATTAACAAGATGCTTTCGTGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGTGCATTTGGCAAACCACTAGGAACCTGTGCGAGGGTGGACATCGGTCAGGTTCTCCTTTCGGTTCGCTGCAAGGACAACAACGGACAGAATGCGCAGGAGGCTCTCCGCCGAGCTAAGTTCAAGTTTCCTGGTCGTCAGAAGATCATTGTAAGCAGGAAGTGGGGGTTCACTAAATTCAGCCGAGCTGAGTATCTAAAGTACAAGGCGGAGAACAAGATTCTTCCTGATGGTGTTAACGCAAAGCTTCTTGGTTGCCATGGGCCTCTTGCTAACCGTCAGCCTGGAAGAGCTTTTCTATCTCAAACTGCATAG

Coding sequence (CDS)

ATGGGGAGAAGACCGGCTAGGTGTTACAGACAGATTAAAAACAAACCATACCCCAAGTCTCGATTTTGTCGTGGTGTCCCCGATCCCAAGATTAGGATCTATGATGTTGGCATGAAAAGGAAAGGAGTTGATGAATTTCCATTCTGTGTCCACCTTGTGAGTTGGGAGAAAGAAAATGTGTCAAGTGAGGCTTTGGAAGCAGCTAGGATTGCCTGCAATAAGTATATGACCAAGTTTGCAGGGAAGGATGCGTTCCATTTGAGGGTTCGGGTGCACCCGTTCCATGTTCTACGTATTAACAAGATGCTTTCGTGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGTGCATTTGGCAAACCACTAGGAACCTGTGCGAGGGTGGACATCGGTCAGGTTCTCCTTTCGGTTCGCTGCAAGGACAACAACGGACAGAATGCGCAGGAGGCTCTCCGCCGAGCTAAGTTCAAGTTTCCTGGTCGTCAGAAGATCATTGTAAGCAGGAAGTGGGGGTTCACTAAATTCAGCCGAGCTGAGTATCTAAAGTACAAGGCGGAGAACAAGATTCTTCCTGATGGTGTTAACGCAAAGCTTCTTGGTTGCCATGGGCCTCTTGCTAACCGTCAGCCTGGAAGAGCTTTTCTATCTCAAACTGCATAG
BLAST of CmoCh16G004870 vs. Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.1e-117
Identity = 202/219 (92.24%), Postives = 208/219 (94.98%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTK AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP G CARV IGQVLLSVRCKD N  +AQEALRRAKFKFPGRQKIIVSRKWGFTKFSR +
Sbjct: 121 KPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQT 220
           YLKYK+EN+I+PDGVNAKLLG HGPLA RQPGRAFLS +
Sbjct: 181 YLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219

BLAST of CmoCh16G004870 vs. Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.1e-117
Identity = 196/217 (90.32%), Postives = 210/217 (96.77%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTK+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARV IGQVLLSVRCKD N  +AQEALRRAKFKFP RQKIIVSRKWGFTKF+R +
Sbjct: 121 KPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLS 218
           Y+K+K++N+ILPDGVNAKLLGCHGPLANRQPG+AF++
Sbjct: 181 YIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFIN 217

BLAST of CmoCh16G004870 vs. Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 2.7e-117
Identity = 200/220 (90.91%), Postives = 208/220 (94.55%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP G CARV IGQVLLSVRCKDNN  NAQEALRRAKFKFPGRQKIIVSRKWGFTK +RA+
Sbjct: 121 KPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 221
           Y + K+EN+ILPDGVNAKLLGCHG LANR+PGRAF+   A
Sbjct: 181 YPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDAVA 220

BLAST of CmoCh16G004870 vs. Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 2.4e-113
Identity = 195/220 (88.64%), Postives = 205/220 (93.18%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           K LGTCARV IGQVLLSVRCKDN+G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAE
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAE 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 221
           Y K +A  +I+PDGVNAK L  HGPLANRQPG AF+S T+
Sbjct: 181 YTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220

BLAST of CmoCh16G004870 vs. Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 409.5 bits (1051), Expect = 2.4e-113
Identity = 194/220 (88.18%), Postives = 204/220 (92.73%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMKRKGVDEFP+CVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           K LGTCARV IGQVLLSVRCKD +G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 221
           Y K + E +I+PDGVNAK L CHGPLANRQPG AFLS  A
Sbjct: 181 YTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSAGA 220

BLAST of CmoCh16G004870 vs. TrEMBL
Match: A0A0A0LN38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336100 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 1.8e-120
Identity = 208/219 (94.98%), Postives = 215/219 (98.17%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARV IGQVLLSVRCKD+N Q+AQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQT 220
           YLK+K+ENKI+PDGVNAKLLGCHGPLANRQPGRAFLSQT
Sbjct: 181 YLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLSQT 219

BLAST of CmoCh16G004870 vs. TrEMBL
Match: V7ARW6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G042100g PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 4.5e-119
Identity = 205/217 (94.47%), Postives = 213/217 (98.16%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARV IGQVLLSVRCKD+N  NAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR++
Sbjct: 121 KPQGTCARVAIGQVLLSVRCKDSNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLS 218
           YLK+K+EN+I+PDGVNAKLLGCHGPLANRQPGRAFLS
Sbjct: 181 YLKFKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLS 217

BLAST of CmoCh16G004870 vs. TrEMBL
Match: A0A0B0NJ94_GOSAR (60S ribosomal L10 OS=Gossypium arboreum GN=F383_19333 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 1.7e-118
Identity = 203/220 (92.27%), Postives = 215/220 (97.73%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARVDIGQVLLSVRCKD+N  +AQEALRRAKFKFPGRQKIIVSRKWGFTK++RA+
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKYNRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 221
           YLK+K+EN+I+PDGVNAKLLGCHGPLANRQPGRAFLS +A
Sbjct: 181 YLKWKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLSGSA 220

BLAST of CmoCh16G004870 vs. TrEMBL
Match: A0A0S3S5S4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G165600 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 2.3e-118
Identity = 205/220 (93.18%), Postives = 211/220 (95.91%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARV IGQVLLSVRCKD NGQNAQEALRRAKFKFPGRQKIIVSRKWGFTK SR+E
Sbjct: 121 KPQGTCARVSIGQVLLSVRCKDGNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKLSRSE 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 221
           YLK K+EN+I+PDGVNAK+LGCHGPLANR PGRAFL  TA
Sbjct: 181 YLKLKSENRIVPDGVNAKVLGCHGPLANRAPGRAFLPATA 220

BLAST of CmoCh16G004870 vs. TrEMBL
Match: A0A0L9UDN3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g121300 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 2.9e-118
Identity = 203/217 (93.55%), Postives = 213/217 (98.16%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KPLGTCARV IGQVLLSVRCKD+N  +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+R++
Sbjct: 121 KPLGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRSD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLS 218
           YLKYK+EN+I+PDGVNAKLLGCHGPLANRQPGRAFL+
Sbjct: 181 YLKYKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLT 217

BLAST of CmoCh16G004870 vs. TAIR10
Match: AT1G26910.1 (AT1G26910.1 Ribosomal protein L16p/L10e family protein)

HSP 1 Score: 409.5 bits (1051), Expect = 1.4e-114
Identity = 194/220 (88.18%), Postives = 204/220 (92.73%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMKRKGVDEFP+CVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           K LGTCARV IGQVLLSVRCKD +G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 221
           Y K + E +I+PDGVNAK L CHGPLANRQPG AFLS  A
Sbjct: 181 YTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSAGA 220

BLAST of CmoCh16G004870 vs. TAIR10
Match: AT1G66580.1 (AT1G66580.1 senescence associated gene 24)

HSP 1 Score: 409.5 bits (1051), Expect = 1.4e-114
Identity = 195/220 (88.64%), Postives = 205/220 (93.18%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           K LGTCARV IGQVLLSVRCKDN+G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAE
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAE 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 221
           Y K +A  +I+PDGVNAK L  HGPLANRQPG AF+S T+
Sbjct: 181 YTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220

BLAST of CmoCh16G004870 vs. TAIR10
Match: AT1G14320.1 (AT1G14320.1 Ribosomal protein L16p/L10e family protein)

HSP 1 Score: 406.4 bits (1043), Expect = 1.1e-113
Identity = 191/216 (88.43%), Postives = 202/216 (93.52%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           K LGTCARV IGQVLLSVRCKD +G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 217
           + K + E +++PDGVNAK L CHGPLANRQPG AFL
Sbjct: 181 FTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFL 216

BLAST of CmoCh16G004870 vs. NCBI nr
Match: gi|659101772|ref|XP_008451785.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo])

HSP 1 Score: 456.1 bits (1172), Expect = 3.6e-125
Identity = 217/220 (98.64%), Postives = 219/220 (99.55%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 221
           YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA
Sbjct: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 220

BLAST of CmoCh16G004870 vs. NCBI nr
Match: gi|449438947|ref|XP_004137249.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus])

HSP 1 Score: 455.3 bits (1170), Expect = 6.1e-125
Identity = 217/220 (98.64%), Postives = 218/220 (99.09%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 221
           YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220

BLAST of CmoCh16G004870 vs. NCBI nr
Match: gi|659119109|ref|XP_008459481.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo])

HSP 1 Score: 440.7 bits (1132), Expect = 1.6e-120
Identity = 210/220 (95.45%), Postives = 214/220 (97.27%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 26  MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 85

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 86  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 145

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARV IGQVLLSVRCKD+N Q+AQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 146 KPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 205

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 221
           YL YKAENKILPDGVNAKLLGCHGPLANRQPGRAFL QTA
Sbjct: 206 YLAYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLPQTA 245

BLAST of CmoCh16G004870 vs. NCBI nr
Match: gi|449459224|ref|XP_004147346.1| (PREDICTED: 60S ribosomal protein L10 [Cucumis sativus])

HSP 1 Score: 439.9 bits (1130), Expect = 2.6e-120
Identity = 208/219 (94.98%), Postives = 215/219 (98.17%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARV IGQVLLSVRCKD+N Q+AQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQT 220
           YLK+K+ENKI+PDGVNAKLLGCHGPLANRQPGRAFLSQT
Sbjct: 181 YLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLSQT 219

BLAST of CmoCh16G004870 vs. NCBI nr
Match: gi|659121889|ref|XP_008460864.1| (PREDICTED: 60S ribosomal protein L10 [Cucumis melo])

HSP 1 Score: 439.5 bits (1129), Expect = 3.5e-120
Identity = 208/220 (94.55%), Postives = 215/220 (97.73%), Query Frame = 1

Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARV IGQVLLSVRCKD+N Q+AQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 221
           YLK+K+ENKI+PDGVNAKLLGCHGPLANRQPGRAFL QTA
Sbjct: 181 YLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLPQTA 220

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RL10_SOLME2.1e-11792.2460S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1[more]
RL10_VITRI2.1e-11790.3260S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1[more]
RL10_EUPES2.7e-11790.9160S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1[more]
RL103_ARATH2.4e-11388.6460S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1[more]
RL102_ARATH2.4e-11388.1860S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0LN38_CUCSA1.8e-12094.98Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336100 PE=4 SV=1[more]
V7ARW6_PHAVU4.5e-11994.47Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G042100g PE=4 SV=1[more]
A0A0B0NJ94_GOSAR1.7e-11892.2760S ribosomal L10 OS=Gossypium arboreum GN=F383_19333 PE=4 SV=1[more]
A0A0S3S5S4_PHAAN2.3e-11893.18Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G165600 PE=... [more]
A0A0L9UDN3_PHAAN2.9e-11893.55Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g121300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G26910.11.4e-11488.18 Ribosomal protein L16p/L10e family protein[more]
AT1G66580.11.4e-11488.64 senescence associated gene 24[more]
AT1G14320.11.1e-11388.43 Ribosomal protein L16p/L10e family protein[more]
Match NameE-valueIdentityDescription
gi|659101772|ref|XP_008451785.1|3.6e-12598.64PREDICTED: 60S ribosomal protein L10-like [Cucumis melo][more]
gi|449438947|ref|XP_004137249.1|6.1e-12598.64PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus][more]
gi|659119109|ref|XP_008459481.1|1.6e-12095.45PREDICTED: 60S ribosomal protein L10-like [Cucumis melo][more]
gi|449459224|ref|XP_004147346.1|2.6e-12094.98PREDICTED: 60S ribosomal protein L10 [Cucumis sativus][more]
gi|659121889|ref|XP_008460864.1|3.5e-12094.55PREDICTED: 60S ribosomal protein L10 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001197Ribosomal_L10e
IPR016180Ribosomal_L10e/L16
IPR018255Ribosomal_L10e_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G004870.1CmoCh16G004870.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001197Ribosomal protein L10ePIRPIRSF005590RPL10a_RPL10ecoord: 1..182
score: 7.9
IPR001197Ribosomal protein L10eTIGRFAMsTIGR00279TIGR00279coord: 1..174
score: 4.6
IPR016180Ribosomal protein L10e/L16GENE3DG3DSA:3.90.1170.10coord: 4..173
score: 2.9
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 12..166
score: 1.2
IPR016180Ribosomal protein L10e/L16unknownSSF54686Ribosomal protein L16p/L10ecoord: 4..173
score: 1.09
IPR018255Ribosomal protein L10e, conserved sitePROSITEPS01257RIBOSOMAL_L10Ecoord: 108..129
scor
NoneNo IPR availablePANTHERPTHR1172660S RIBOSOMAL PROTEIN L10coord: 2..216
score: 2.2E
NoneNo IPR availablePANTHERPTHR11726:SF15SUBFAMILY NOT NAMEDcoord: 2..216
score: 2.2E