Cp4.1LG14g03390 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g03390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal L10
Location	Cp4.1LG14 : 2331357 .. 2333565 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCTTGGAGTGTGAAATGAATTAGGTTGGACAAACTTGTTGTTCAAGCAGCCAATTTTTGTTGACAAATTTCACGGTTGAAAAAGGGGTATTTGGCCCAATTTCTGCGTCCAAATCTGCTATAAAAAGGGTTAACAACCATTTTAGGCGCTGAATCTCGTCGCGTCGCCGCCGCTTCCACAACTTATCTCTCAATCGCTGCTTTGGTGGTACGAACACTACTTTTTCTTCTTTATTTCGGTCGTAATTTTGATGCTTGCTGGTTGCTGAACCCGAAAACTAGCTGTTGTTAGTGCTAATGTTGCATTCGGGAAATCGTAGATTAGTTTTTATCTGAAACAGAGGAAAGTTCATGAGGTGTGTTGAGCCATAAAGCGTTCATTTGATTAGGAGCATTTCAGGGTAATGTCTACTTAAGATTGGGAGATGATTGTATTGTTGGTTTAGGGCTATTTGAATCCATTTAGCGTCAATAATGATCTATAATTAGTTTCAACAACTTTAGATGGTTGCTTCTGTGTTATAAAATTAAGAACGAGGAGAAGATGATGATTGAAGCAGGTACTTATGATAATCGGGCATATCTTACTGTTCTCCTGGTGCGGCTAAGTGTAGTTGTGCTGAGTTTCAAGGATATGTCTGTATGATTTACAACACTGCTGTCTGATTTATTCTCTGTTCATTATTTCTTATGTTTAGTGGCCAAAAAAACTGGCCTGACCTTTTCTGTACAAGTCCTATTGGTTATAACTTCAATTGTTGAAGGTTTAGTTGATTTTGAGTTACATCTGGATTTAAATCTCCTAAGCTGAATTTTCATCTATTGTCTATGTAATGAGGTTATACTGGGTGCAGCATTTTGATGTTCATGGAAAGGGAAATAGGATAGGTTTTGAGAATTGGGTGAGGGATGTTCGTGAGATGTGAGATGTGAGATGTGAGATGTGAGATCCCACCTCAGTTAGAGAGGGGAACAAAACATTTCTTATAAGGGTGTGGAAATCTCTCCATAGTAGACAGCTTTTTAAAACTGTGAGGCTGATGGAGATATGTAACGGGCCAAAGCGAACAATATTTTGTAGCGGTGGGCTTGGGCTGTTACAAATGATATTAGAGCCAGACACTAAGTGATATGCCAATGAGGACGCTAGGCCCCCAAGGGGGTGGGGATTCGGGTGGGCTTGGGTTGTTACAAATGGTATCAGATCCAGACACTGAGTGATGTGCCAACGAGTACCCTAGGCTCCCAAGGGGGCGGGGATTGTGAGATCCTATATTGGTTGGAGAGGGGAACGAAGCCTTCCTTATAAGAGTGTGGAAACCTCTCCCTAATAGATAGCGTTTTGAAACTGTGAGATTGATGGCGATACGGCGATACGTAATGAACCAAAGCGGACAATATTTACTAGCAGTGGGCTTGGACTGTTACACGAGATTTGGGTGCAATTTCAATTAGCCATCTAGTTTTGGACATTATCCAGTTAACTTTTACGTGATGTTGTTATATTTTTGTACAACTATGCAGGTTTCAGTTTGAGCACGCTTGCAATGGGGAGAAGACCGGCTAGGTGTTACCGACAGATTAAAAACAAACCATACCCTAAGTCTCGATTTTGTCGTGGTGTCCCCGATCCCAAGATTAGGATCTATGATGTTGGCATGAAAAGGAAAGGAGTTGATGAATTTCCATTCTGTGTCCACCTTGTGAGTTGGGAGAAAGAAAATGTGTCAAGTGAGGCTTTGGAAGCAGCTAGGATTGCCTGCAATAAGTATATGACCAAGTTTGCTGGGAAGGATGCGTTCCATTTGAGGGTTCGGGTTCACCCGTTCCATGTTCTACGTATTAACAAGATGCTTTCGTGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGTGCATTTGGCAAACCACTAGGAACCTGTGCGAGGGTGGACATCGGTCAGGTTCTCCTTTCGGTTCGCTGCAAGGACAACAACGGACAGAATGCGCAGGAGGCTCTCCGCCGAGCTAAGTTCAAGTTTCCTGGTCGTCAGAAGATCATTGTAAGCAGGAAGTGGGGGTTCACTAAATTCAGCCGAGCTGAGTATCTGAAGTACAAGGCAGAGAACAAGATTCTTCCTGATGGTGTTAACGCAAAGCTTCTTGGTTGCCATGGGCCTCTTGCTAACCGTCAGCCTGGAAGAGCTTTTCTATCTCAAACTGCA

mRNA sequence

AATCCTTGGAGTGTGAAATGAATTAGGTTGGACAAACTTGTTGTTCAAGCAGCCAATTTTTGTTGACAAATTTCACGGTTGAAAAAGGGGTATTTGGCCCAATTTCTGCGTCCAAATCTGCTATAAAAAGGGTTAACAACCATTTTAGGCGCTGAATCTCGTCGCGTCGCCGCCGCTTCCACAACTTATCTCTCAATCGCTGCTTTGGTGATGCTTTCGTGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGTGCATTTGGCAAACCACTAGGAACCTGTGCGAGGGTGGACATCGGTCAGGTTCTCCTTTCGGTTCGCTGCAAGGACAACAACGGACAGAATGCGCAGGAGGCTCTCCGCCGAGCTAAGTTCAAGTTTCCTGGTCGTCAGAAGATCATTGTAAGCAGGAAGTGGGGGTTCACTAAATTCAGCCGAGCTGAGTATCTGAAGTACAAGGCAGAGAACAAGATTCTTCCTGATGGTGTTAACGCAAAGCTTCTTGGTTGCCATGGGCCTCTTGCTAACCGTCAGCCTGGAAGAGCTTTTCTATCTCAAACTGCA

Coding sequence (CDS)

ATGCTTTCGTGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGTGCATTTGGCAAACCACTAGGAACCTGTGCGAGGGTGGACATCGGTCAGGTTCTCCTTTCGGTTCGCTGCAAGGACAACAACGGACAGAATGCGCAGGAGGCTCTCCGCCGAGCTAAGTTCAAGTTTCCTGGTCGTCAGAAGATCATTGTAAGCAGGAAGTGGGGGTTCACTAAATTCAGCCGAGCTGAGTATCTGAAGTACAAGGCAGAGAACAAGATTCTTCCTGATGGTGTTAACGCAAAGCTTCTTGGTTGCCATGGGCCTCTTGCTAACCGTCAGCCTGGAAGAGCTTTTCTATCTCAAACTGCA

Protein sequence

MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA

Homology

[Close]

BLAST of Cp4.1LG14g03390 vs. Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.3e-54
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP GTCARV IGQVLLSVRCKD N  +AQEALRRAKFKFP 
Sbjct: 102 MLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPA 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLS 117
           RQKIIVSRKWGFTKF+R +Y+K+K++N+ILPDGVNAKLLGCHGPLANRQPG+AF++
Sbjct: 162 RQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFIN 217

[Close]

BLAST of Cp4.1LG14g03390 vs. Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-54
Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP G CARV IGQVLLSVRCKD N  +AQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQT 119
           RQKIIVSRKWGFTKFSR +YLKYK+EN+I+PDGVNAKLLG HGPLA RQPGRAFLS +
Sbjct: 162 RQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219

[Close]

BLAST of Cp4.1LG14g03390 vs. Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-53
Identity = 100/119 (84.03%), Postives = 107/119 (89.92%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP G CARV IGQVLLSVRCKDNN  NAQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 120
           RQKIIVSRKWGFTK +RA+Y + K+EN+ILPDGVNAKLLGCHG LANR+PGRAF+   A
Sbjct: 162 RQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDAVA 220

[Close]

BLAST of Cp4.1LG14g03390 vs. Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.7e-53
Identity = 100/115 (86.96%), Postives = 105/115 (91.30%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP G CARV IGQVLLSVRCKD N  +AQEALRRAKFKFP 
Sbjct: 31  MLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPR 90

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 116
           RQKIIVSRKWGFTKFSR +YLKYK+EN+I+PDGVNAKLLGCHG LA RQPGRAFL
Sbjct: 91  RQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFL 145

[Close]

BLAST of Cp4.1LG14g03390 vs. Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 205.7 bits (522), Expect = 2.8e-52
Identity = 99/119 (83.19%), Postives = 106/119 (89.08%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGK LGTCARV IGQVLLSVRCKD +G +AQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 120
           RQKIIVSRKWGFTKF+RA+Y K + E +I+PDGVNAK L CHGPLANRQPG AFLS  A
Sbjct: 162 RQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSAGA 220

[Close]

BLAST of Cp4.1LG14g03390 vs. TrEMBL
Match: A0A0A0KYV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081250 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.2e-61
Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP GTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG
Sbjct: 27  MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 86

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 120
           RQKIIVSRKWGFTKFSRA+YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 87  RQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 145

[Close]

BLAST of Cp4.1LG14g03390 vs. TrEMBL
Match: A0A0A0LN38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336100 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-57
Identity = 109/118 (92.37%), Postives = 115/118 (97.46%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP GTCARV IGQVLLSVRCKD+N Q+AQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQT 119
           RQKIIVSRKWGFTKFSRA+YLK+K+ENKI+PDGVNAKLLGCHGPLANRQPGRAFLSQT
Sbjct: 162 RQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLSQT 219

[Close]

BLAST of Cp4.1LG14g03390 vs. TrEMBL
Match: A0A0A0KVY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G645120 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.0e-57
Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP GTCARV IGQVLLSVRCKD+N Q+AQEALRRAKFKFPG
Sbjct: 27  MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPG 86

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ 118
           RQKIIVSRKWGFTKFSRA+YL YKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ
Sbjct: 87  RQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ 143

[Close]

BLAST of Cp4.1LG14g03390 vs. TrEMBL
Match: A0A0B0NJ94_GOSAR (60S ribosomal L10 OS=Gossypium arboreum GN=F383_19333 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-55
Identity = 105/119 (88.24%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP GTCARVDIGQVLLSVRCKD+N  +AQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 120
           RQKIIVSRKWGFTK++RA+YLK+K+EN+I+PDGVNAKLLGCHGPLANRQPGRAFLS +A
Sbjct: 162 RQKIIVSRKWGFTKYNRADYLKWKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLSGSA 220

[Close]

BLAST of Cp4.1LG14g03390 vs. TrEMBL
Match: V7ARW6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G042100g PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.5e-55
Identity = 105/116 (90.52%), Postives = 112/116 (96.55%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP GTCARV IGQVLLSVRCKD+N  NAQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHNAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLS 117
           RQKIIVSRKWGFTKFSR++YLK+K+EN+I+PDGVNAKLLGCHGPLANRQPGRAFLS
Sbjct: 162 RQKIIVSRKWGFTKFSRSDYLKFKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLS 217

[Close]

BLAST of Cp4.1LG14g03390 vs. TAIR10
Match: AT1G26910.1 (AT1G26910.1 Ribosomal protein L16p/L10e family protein)

HSP 1 Score: 205.7 bits (522), Expect = 1.6e-53
Identity = 99/119 (83.19%), Postives = 106/119 (89.08%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGK LGTCARV IGQVLLSVRCKD +G +AQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 120
           RQKIIVSRKWGFTKF+RA+Y K + E +I+PDGVNAK L CHGPLANRQPG AFLS  A
Sbjct: 162 RQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSAGA 220

[Close]

BLAST of Cp4.1LG14g03390 vs. TAIR10
Match: AT1G66580.1 (AT1G66580.1 senescence associated gene 24)

HSP 1 Score: 204.5 bits (519), Expect = 3.6e-53
Identity = 99/119 (83.19%), Postives = 107/119 (89.92%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGK LGTCARV IGQVLLSVRCKDN+G +AQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 120
           RQKIIVSRKWGFTKF+RAEY K +A  +I+PDGVNAK L  HGPLANRQPG AF+S T+
Sbjct: 162 RQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220

[Close]

BLAST of Cp4.1LG14g03390 vs. TAIR10
Match: AT1G14320.1 (AT1G14320.1 Ribosomal protein L16p/L10e family protein)

HSP 1 Score: 201.4 bits (511), Expect = 3.0e-52
Identity = 95/115 (82.61%), Postives = 104/115 (90.43%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGK LGTCARV IGQVLLSVRCKD +G +AQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 116
           RQKIIVSRKWGFTKF+RA++ K + E +++PDGVNAK L CHGPLANRQPG AFL
Sbjct: 162 RQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFL 216

[Close]

BLAST of Cp4.1LG14g03390 vs. NCBI nr
Match: gi|659101772|ref|XP_008451785.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 2.0e-61
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP GTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 120
           RQKIIVSRKWGFTKFSRA+YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA
Sbjct: 162 RQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 220

[Close]

BLAST of Cp4.1LG14g03390 vs. NCBI nr
Match: gi|449438947|ref|XP_004137249.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 7.5e-61
Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP GTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 120
           RQKIIVSRKWGFTKFSRA+YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 162 RQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220

[Close]

BLAST of Cp4.1LG14g03390 vs. NCBI nr
Match: gi|700198389|gb|KGN53547.1| (hypothetical protein Csa_4G081250 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 7.5e-61
Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP GTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG
Sbjct: 27  MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 86

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 120
           RQKIIVSRKWGFTKFSRA+YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 87  RQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 145

[Close]

BLAST of Cp4.1LG14g03390 vs. NCBI nr
Match: gi|659119109|ref|XP_008459481.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 111/119 (93.28%), Postives = 114/119 (95.80%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP GTCARV IGQVLLSVRCKD+N Q+AQEALRRAKFKFPG
Sbjct: 127 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPG 186

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 120
           RQKIIVSRKWGFTKFSRA+YL YKAENKILPDGVNAKLLGCHGPLANRQPGRAFL QTA
Sbjct: 187 RQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLPQTA 245

[Close]

BLAST of Cp4.1LG14g03390 vs. NCBI nr
Match: gi|449459224|ref|XP_004147346.1| (PREDICTED: 60S ribosomal protein L10 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 3.8e-57
Identity = 109/118 (92.37%), Postives = 115/118 (97.46%), Query Frame = 1


Query: 1   MLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPG 60
           MLSCAGADRLQTGMRGAFGKP GTCARV IGQVLLSVRCKD+N Q+AQEALRRAKFKFPG
Sbjct: 102 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPG 161

Query: 61  RQKIIVSRKWGFTKFSRAEYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQT 119
           RQKIIVSRKWGFTKFSRA+YLK+K+ENKI+PDGVNAKLLGCHGPLANRQPGRAFLSQT
Sbjct: 162 RQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLSQT 219

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g03390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL10_VITRI	2.3e-54	84.48	60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1	[more]
RL10_SOLME	3.0e-54	86.44	60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1	[more]
RL10_EUPES	1.5e-53	84.03	60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1	[more]
RL10_TOBAC	5.7e-53	86.96	60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1	[more]
RL102_ARATH	2.8e-52	83.19	60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2	[more]

BLAST of Cp4.1LG14g03390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYV1_CUCSA	5.2e-61	97.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081250 PE=4 SV=1	[more]
A0A0A0LN38_CUCSA	2.7e-57	92.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336100 PE=4 SV=1	[more]
A0A0A0KVY2_CUCSA	6.0e-57	94.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G645120 PE=4 SV=1	[more]
A0A0B0NJ94_GOSAR	1.1e-55	88.24	60S ribosomal L10 OS=Gossypium arboreum GN=F383_19333 PE=4 SV=1	[more]
V7ARW6_PHAVU	2.5e-55	90.52	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G042100g PE=4 SV=1	[more]

BLAST of Cp4.1LG14g03390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26910.1	1.6e-53	83.19	Ribosomal protein L16p/L10e family protein	[more]
AT1G66580.1	3.6e-53	83.19	senescence associated gene 24	[more]
AT1G14320.1	3.0e-52	82.61	Ribosomal protein L16p/L10e family protein	[more]

BLAST of Cp4.1LG14g03390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101772\|ref\|XP_008451785.1\|	2.0e-61	98.32	PREDICTED: 60S ribosomal protein L10-like [Cucumis melo]	[more]
gi\|449438947\|ref\|XP_004137249.1\|	7.5e-61	97.48	PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus]	[more]
gi\|700198389\|gb\|KGN53547.1\|	7.5e-61	97.48	hypothetical protein Csa_4G081250 [Cucumis sativus]	[more]
gi\|659119109\|ref\|XP_008459481.1\|	2.2e-57	93.28	PREDICTED: 60S ribosomal protein L10-like [Cucumis melo]	[more]
gi\|449459224\|ref\|XP_004147346.1\|	3.8e-57	92.37	PREDICTED: 60S ribosomal protein L10 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018255	Ribosomal_L10e_CS
IPR016180	Ribosomal_L10e/L16

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g03390.1	Cp4.1LG14g03390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016180	Ribosomal protein L10e/L16	GENE3D	G3DSA:3.90.1170.10		coord: 1..72 score: 5.5
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 5..65 score: 6.9
IPR016180	Ribosomal protein L10e/L16	unknown	SSF54686	Ribosomal protein L16p/L10e	coord: 1..72 score: 2.62
IPR018255	Ribosomal protein L10e, conserved site	PROSITE	PS01257	RIBOSOMAL_L10E	coord: 7..28 scor
None	No IPR available	PANTHER	PTHR11726	60S RIBOSOMAL PROTEIN L10	coord: 1..115 score: 8.5E
None	No IPR available	PANTHER	PTHR11726:SF15	SUBFAMILY NOT NAMED	coord: 1..115 score: 8.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g03390	Cucsa.273930	Cucumber (Gy14) v1	cgycpeB0714
Cp4.1LG14g03390	CmaCh16G004510	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g03390	CmaCh04G006510	Cucurbita maxima (Rimu)	cmacpeB717
Cp4.1LG14g03390	CmoCh04G007000	Cucurbita moschata (Rifu)	cmocpeB670
Cp4.1LG14g03390	CmoCh16G004870	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g03390	Cla005395	Watermelon (97103) v1	cpewmB219
Cp4.1LG14g03390	Csa4G081250	Cucumber (Chinese Long) v2	cpecuB221
Cp4.1LG14g03390	MELO3C016148	Melon (DHL92) v3.5.1	cpemeB196
Cp4.1LG14g03390	ClCG07G010440	Watermelon (Charleston Gray)	cpewcgB209
Cp4.1LG14g03390	CSPI04G07660	Wild cucumber (PI 183967)	cpecpiB223
Cp4.1LG14g03390	MELO3C016148.2	Melon (DHL92) v3.6.1	cpemedB239
Cp4.1LG14g03390	CsaV3_4G007890	Cucumber (Chinese Long) v3	cpecucB0266
Cp4.1LG14g03390	Bhi01G002449	Wax gourd	cpewgoB0294
Cp4.1LG14g03390	CsGy4G007570	Cucumber (Gy14) v2	cgybcpeB487

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG14g03390	Cp4.1LG01g00780	Cucurbita pepo (Zucchini)	cpecpeB236

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g03390	Bottle gourd (USVL1VR-Ls)	cpelsiB184
Cp4.1LG14g03390	Silver-seed gourd	carcpeB0057
Cp4.1LG14g03390	Silver-seed gourd	carcpeB0926