Cp4.1LG01g00440 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g00440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 3565875 .. 3566186 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCGTCGAAGTTTTGTCGAGGCGGCGAGAAGAAGAGGGGACGATGACGACCACGACAACGACGACGATGGAGAAAGAAGAAAGGAAAGGGGGAGTGAGGATAAAGGTAGTGTTGACGAAAGAGGAGTTGCAATGGCTAATGGAGCAAGTTCAGGAGCGAGGAGGGAAAGGGTTAGAAGAATTGTTGGGAGAGATCGAGAGACGAAGAAGAAAAGTAGATGAAGATGGTTCGTGGAGACCTTCTTTGGAGAGTATTATGGAAGTTCCTGAAGTTCCCGATCGGATGGAGCCACTTTCTTCGTAA

mRNA sequence

ATGGGAAACTGCGTCGAAGTTTTGTCGAGGCGGCGAGAAGAAGAGGGGACGATGACGACCACGACAACGACGACGATGGAGAAAGAAGAAAGGAAAGGGGGAGTGAGGATAAAGGTAGTGTTGACGAAAGAGGAGTTGCAATGGCTAATGGAGCAAGTTCAGGAGCGAGGAGGGAAAGGGTTAGAAGAATTGTTGGGAGAGATCGAGAGACGAAGAAGAAAAGTAGATGAAGATGGTTCGTGGAGACCTTCTTTGGAGAGTATTATGGAAGTTCCTGAAGTTCCCGATCGGATGGAGCCACTTTCTTCGTAA

Coding sequence (CDS)

ATGGGAAACTGCGTCGAAGTTTTGTCGAGGCGGCGAGAAGAAGAGGGGACGATGACGACCACGACAACGACGACGATGGAGAAAGAAGAAAGGAAAGGGGGAGTGAGGATAAAGGTAGTGTTGACGAAAGAGGAGTTGCAATGGCTAATGGAGCAAGTTCAGGAGCGAGGAGGGAAAGGGTTAGAAGAATTGTTGGGAGAGATCGAGAGACGAAGAAGAAAAGTAGATGAAGATGGTTCGTGGAGACCTTCTTTGGAGAGTATTATGGAAGTTCCTGAAGTTCCCGATCGGATGGAGCCACTTTCTTCGTAA

Protein sequence

MGNCVEVLSRRREEEGTMTTTTTTTMEKEERKGGVRIKVVLTKEELQWLMEQVQERGGKGLEELLGEIERRRRKVDEDGSWRPSLESIMEVPEVPDRMEPLSS
Homology
[Close]
BLAST of Cp4.1LG01g00440 vs. TrEMBL
Match: A0A0A0KZU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052070 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-27
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREEEGTMTTTTTTTMEKEERKGGVRIKVVLTKEELQWLMEQVQERGGKG 60
           MGNCVEVLSR+REE+GT TTT+T  ME+ E+KGG+RIKVVL KEEL+WL EQ++E+GGK 
Sbjct: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60

Query: 61  LEELLGEIERRRRK-------VDEDGSWRPSLESIMEVPEVPDRM 99
           LEELL EIER RR+       +  + SW+PSLESIME PE+PD M
Sbjct: 61  LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHM 105

[Close]
BLAST of Cp4.1LG01g00440 vs. TrEMBL
Match: M1AWN7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012280 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.9e-15
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1 

Query: 1   MGNCVEVLSRRR--EEEGTMTTTTTTTMEKEERKGGVRIKVVLTKEELQWLMEQVQERGG 60
           MGNCVE   +R   EE        T    KEE K  +R+KVVLTKEEL+WL+ Q++ R G
Sbjct: 1   MGNCVETCLQRENTEESQIREDEKTVKFHKEEGKTNMRLKVVLTKEELEWLLLQLKFREG 60

Query: 61  KGLEELLGEIERRRRKVDEDGSWRPSLESIMEVPEVPDRME 100
           K LEE LGEIE+ R K+     W+PSLESI E PEVP+ M+
Sbjct: 61  KNLEEFLGEIEKNRGKI--CSGWKPSLESITESPEVPEMMD 99

[Close]
BLAST of Cp4.1LG01g00440 vs. TrEMBL
Match: K4CPN3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-14
Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 1 

Query: 1   MGNCVEVLSRRR--EEEGTMTTTTTTTMEKEERKGGVRIKVVLTKEELQWLMEQVQERGG 60
           MGNCVE   +R   EE        T    KEE K  +R+KVVLTKEEL+WL+ Q++ R G
Sbjct: 1   MGNCVETCLQREITEESQIGEDEKTVKFHKEEGKTNMRLKVVLTKEELEWLLLQLKFREG 60

Query: 61  KGLEELLGEIERRRRKVDEDGSWRPSLESIMEVPEVPDRME 100
           K LEE LGEIE+ R K      W+PSLESI E PEVP+ M+
Sbjct: 61  KNLEEFLGEIEKNRGK--NCSGWKPSLESITESPEVPEMMD 99

[Close]
BLAST of Cp4.1LG01g00440 vs. TrEMBL
Match: A0A0V0H5I2_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.1e-14
Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 1 

Query: 1   MGNCVEVLSRRR--EEEGTMTTTTTTTMEKEERKGGVRIKVVLTKEELQWLMEQVQERGG 60
           MGNCVE   +R   EE        T    KEE K  +R+KVVLTKEEL+WL+ Q++ R G
Sbjct: 1   MGNCVETCLQRENTEESQIREDEKTVKFPKEEGKTNMRLKVVLTKEELEWLLLQLKFREG 60

Query: 61  KGLEELLGEIERRRRKVDEDGSWRPSLESIMEVPEVPDRME 100
           K L E LGEIE+ R K+     W+PSLESI E PEVP+ M+
Sbjct: 61  KNLGEFLGEIEKNRGKI--CSGWKPSLESITESPEVPEMMD 99

[Close]
BLAST of Cp4.1LG01g00440 vs. TrEMBL
Match: I3T2F8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.0e-14
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREEEGTMTTTTTTTMEKEER--------------KGGVRIKVVLTKEEL 60
           MGNC+E  + R+++   M        E++ +              K G+R+K+VLTKEEL
Sbjct: 1   MGNCMETCTLRKQDAMRMQKKQQQKQEEDTKTRSSGFVKINDSKGKNGLRMKIVLTKEEL 60

Query: 61  QWLMEQVQERGGKGLEELLGEIERRRRKVDEDGSWRPSLESIMEVPEVPD 97
           +WLM Q+ E+GG  LE++LGEIE R R++  +GSW+PSLESI+E PE PD
Sbjct: 61  KWLMLQLNEKGGMKLEKVLGEIE-RGREIKVEGSWKPSLESIVEAPESPD 109

[Close]
BLAST of Cp4.1LG01g00440 vs. NCBI nr
Match: gi|659102095|ref|XP_008451950.1| (PREDICTED: uncharacterized protein LOC103493097 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 2.5e-28
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREEEGTMTTTTTTTMEKEERKGGVRIKVVLTKEELQWLMEQVQERGGKG 60
           MGNCVEVLSR+REEEGT TTT+T  ME++E+KGG+RIKVVL KEEL+WL EQ++E+GGKG
Sbjct: 1   MGNCVEVLSRQREEEGTTTTTSTREMEEKEKKGGMRIKVVLRKEELEWLTEQIKEKGGKG 60

Query: 61  LEELLGEIERRRRKVDED--------GSWRPSLESIMEVPEVPDRM 99
           LEELL EIER RR+  E+         SW+PSLESIME PE+PD M
Sbjct: 61  LEELLEEIERGRREKLENYCSIQYSSVSWKPSLESIMECPEIPDHM 106

[Close]
BLAST of Cp4.1LG01g00440 vs. NCBI nr
Match: gi|700198248|gb|KGN53406.1| (hypothetical protein Csa_4G052070 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-27
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREEEGTMTTTTTTTMEKEERKGGVRIKVVLTKEELQWLMEQVQERGGKG 60
           MGNCVEVLSR+REE+GT TTT+T  ME+ E+KGG+RIKVVL KEEL+WL EQ++E+GGK 
Sbjct: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60

Query: 61  LEELLGEIERRRRK-------VDEDGSWRPSLESIMEVPEVPDRM 99
           LEELL EIER RR+       +  + SW+PSLESIME PE+PD M
Sbjct: 61  LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHM 105

[Close]
BLAST of Cp4.1LG01g00440 vs. NCBI nr
Match: gi|645267350|ref|XP_008239031.1| (PREDICTED: uncharacterized protein LOC103337641 [Prunus mume])

HSP 1 Score: 88.6 bits (218), Expect = 7.0e-15
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREEEGTMTTTTTTTMEKEE-----------RKGGVRIKVVLTKEELQWL 60
           MGNCVE  + R + E  M        E++            + G +R+K+VLTKEELQWL
Sbjct: 1   MGNCVETCTERHQGEDQMQQQKDEQEERQNEIRFVKESNLSKDGNIRVKIVLTKEELQWL 60

Query: 61  MEQVQERGGKGLEELLGEIERRRRKVDEDGSWRPSLESIMEVPEV 95
           M Q+++RGGK LE++L EI+R R KV+E   W+PSLESIME PEV
Sbjct: 61  MIQLKDRGGKSLEDVLEEIQRSRAKVEE--GWKPSLESIMECPEV 103

[Close]
BLAST of Cp4.1LG01g00440 vs. NCBI nr
Match: gi|388517277|gb|AFK46700.1| (unknown [Lotus japonicus])

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-13
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREEEGTMTTTTTTTMEKEER--------------KGGVRIKVVLTKEEL 60
           MGNC+E  + R+++   M        E++ +              K G+R+K+VLTKEEL
Sbjct: 1   MGNCMETCTLRKQDAMRMQKKQQQKQEEDTKTRSSGFVKINDSKGKNGLRMKIVLTKEEL 60

Query: 61  QWLMEQVQERGGKGLEELLGEIERRRRKVDEDGSWRPSLESIMEVPEVPD 97
           +WLM Q+ E+GG  LE++LGEIE R R++  +GSW+PSLESI+E PE PD
Sbjct: 61  KWLMLQLNEKGGMKLEKVLGEIE-RGREIKVEGSWKPSLESIVEAPESPD 109

[Close]
BLAST of Cp4.1LG01g00440 vs. NCBI nr
Match: gi|731378406|ref|XP_010659251.1| (PREDICTED: uncharacterized protein LOC100247918 [Vitis vinifera])

HSP 1 Score: 81.6 bits (200), Expect = 8.6e-13
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 1 

Query: 1  MGNCVEVLSRRREEEGTMTTTTTTTMEKEERKG---GVRIKVVLTKEELQWLMEQVQERG 60
          MGNC+E    R E E           E EE+KG   GVR+K+VLTKEEL+W+M Q++++G
Sbjct: 1  MGNCMETCRERHEAEEEERNQEKQGGE-EEKKGSGYGVRVKIVLTKEELEWMMFQLKDKG 60

Query: 61 GKGLEELLGEIERRRRKVDEDG---SWRPSLESIMEVPEV 95
          GK LE++L EIER R      G    W+PSLESIME PEV
Sbjct: 61 GKSLEDVLREIERGRSSAATAGKVEGWKPSLESIMESPEV 99

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g00440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g00440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZU9_CUCSA2.5e-2765.71Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052070 PE=4 SV=1[more]
M1AWN7_SOLTU4.9e-1552.48Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012280 PE=4 SV=1[more]
K4CPN3_SOLLC3.2e-1452.48Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A0V0H5I2_SOLCH4.1e-1451.49Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
I3T2F8_LOTJA7.0e-1444.55Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of Cp4.1LG01g00440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g00440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102095|ref|XP_008451950.1|2.5e-2867.92PREDICTED: uncharacterized protein LOC103493097 [Cucumis melo][more]
gi|700198248|gb|KGN53406.1|3.6e-2765.71hypothetical protein Csa_4G052070 [Cucumis sativus][more]
gi|645267350|ref|XP_008239031.1|7.0e-1548.57PREDICTED: uncharacterized protein LOC103337641 [Prunus mume][more]
gi|388517277|gb|AFK46700.1|1.0e-1344.55unknown [Lotus japonicus][more]
gi|731378406|ref|XP_010659251.1|8.6e-1351.00PREDICTED: uncharacterized protein LOC100247918 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g00440.1Cp4.1LG01g00440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35704FAMILY NOT NAMEDcoord: 29..102
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g00440CmaCh04G006880Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g00440CmoCh04G007330Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g00440Cla012803Watermelon (97103) v1cpewmB422
Cp4.1LG01g00440ClCG07G011620Watermelon (Charleston Gray)cpewcgB408
Cp4.1LG01g00440CsaV3_4G006590Cucumber (Chinese Long) v3cpecucB0503
Cp4.1LG01g00440Bhi01G002298Wax gourdcpewgoB0518
Cp4.1LG01g00440Carg13070Silver-seed gourdcarcpeB0061
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g00440Cucurbita pepo (Zucchini)cpecpeB206
Cp4.1LG01g00440Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG01g00440Cucurbita maxima (Rimu)cmacpeB324
Cp4.1LG01g00440Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g00440Cucurbita moschata (Rifu)cmocpeB287
Cp4.1LG01g00440Cucurbita moschata (Rifu)cmocpeB313
Cp4.1LG01g00440Wild cucumber (PI 183967)cpecpiB405
Cp4.1LG01g00440Wild cucumber (PI 183967)cpecpiB431
Cp4.1LG01g00440Cucumber (Chinese Long) v2cpecuB406
Cp4.1LG01g00440Cucumber (Chinese Long) v2cpecuB432
Cp4.1LG01g00440Bottle gourd (USVL1VR-Ls)cpelsiB378
Cp4.1LG01g00440Melon (DHL92) v3.5.1cpemeB362
Cp4.1LG01g00440Melon (DHL92) v3.5.1cpemeB415
Cp4.1LG01g00440Melon (DHL92) v3.5.1cpemeB427
Cp4.1LG01g00440Cucumber (Gy14) v2cgybcpeB508
Cp4.1LG01g00440Melon (DHL92) v3.6.1cpemedB486
Cp4.1LG01g00440Melon (DHL92) v3.6.1cpemedB499
Cp4.1LG01g00440Silver-seed gourdcarcpeB0839
Cp4.1LG01g00440Cucumber (Chinese Long) v3cpecucB0538