CmoCh04G007330 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G007330
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 3644224 .. 3644535 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCGTCGAAGTTTTGTCTAGGCGGCGTGAAGAAGAAGAGATGACGACGACGGCGACTACGACAATAATGGAGAAAGAAGAAAGGAAAGGGAGAGTGAGGATAAAGGTAGTGTTGACAAAAGAGGAGCTGCAATGGCTAATGGAGCAAGTTCAGGAGCGAGGAGGGAAAGGGTTAGAAGAATTGTTGGGAGAGATCGAGGGACGAAGAAAAAAAGTAAACGAAGATGGTTCGTGGAGACCTTCTTTGGAGAGTATTATGGAAGTTCCCGAAGTTCCCGATCGGATGGACTCACTTTCTTCGTAA

mRNA sequence

ATGGGAAACTGCGTCGAAGTTTTGTCTAGGCGGCGTGAAGAAGAAGAGATGACGACGACGGCGACTACGACAATAATGGAGAAAGAAGAAAGGAAAGGGAGAGTGAGGATAAAGGTAGTGTTGACAAAAGAGGAGCTGCAATGGCTAATGGAGCAAGTTCAGGAGCGAGGAGGGAAAGGGTTAGAAGAATTGTTGGGAGAGATCGAGGGACGAAGAAAAAAAGTAAACGAAGATGGTTCGTGGAGACCTTCTTTGGAGAGTATTATGGAAGTTCCCGAAGTTCCCGATCGGATGGACTCACTTTCTTCGTAA

Coding sequence (CDS)

ATGGGAAACTGCGTCGAAGTTTTGTCTAGGCGGCGTGAAGAAGAAGAGATGACGACGACGGCGACTACGACAATAATGGAGAAAGAAGAAAGGAAAGGGAGAGTGAGGATAAAGGTAGTGTTGACAAAAGAGGAGCTGCAATGGCTAATGGAGCAAGTTCAGGAGCGAGGAGGGAAAGGGTTAGAAGAATTGTTGGGAGAGATCGAGGGACGAAGAAAAAAAGTAAACGAAGATGGTTCGTGGAGACCTTCTTTGGAGAGTATTATGGAAGTTCCCGAAGTTCCCGATCGGATGGACTCACTTTCTTCGTAA
Homology
[Close]
BLAST of CmoCh04G007330 vs. TrEMBL
Match: A0A0A0KZU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052070 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-24
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREEEEMTTTATTTIMEKEERKGRVRIKVVLTKEELQWLMEQVQERGGKG 60
           MGNCVEVLSR+REE+  TTT +T  ME+ E+KG +RIKVVL KEEL+WL EQ++E+GGK 
Sbjct: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60

Query: 61  LEELLGEIE-GRRKK------VNEDGSWRPSLESIMEVPEVPDRM 99
           LEELL EIE GRR+K      +  + SW+PSLESIME PE+PD M
Sbjct: 61  LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHM 105

[Close]
BLAST of CmoCh04G007330 vs. TrEMBL
Match: M1AWN7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012280 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-15
Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 1 

Query: 1   MGNCVEVLSRRR--EEEEMTTTATTTIMEKEERKGRVRIKVVLTKEELQWLMEQVQERGG 60
           MGNCVE   +R   EE ++     T    KEE K  +R+KVVLTKEEL+WL+ Q++ R G
Sbjct: 1   MGNCVETCLQRENTEESQIREDEKTVKFHKEEGKTNMRLKVVLTKEELEWLLLQLKFREG 60

Query: 61  KGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEVPDRMD 100
           K LEE LGEIE  R K+     W+PSLESI E PEVP+ MD
Sbjct: 61  KNLEEFLGEIEKNRGKI--CSGWKPSLESITESPEVPEMMD 99

[Close]
BLAST of CmoCh04G007330 vs. TrEMBL
Match: K4CPN3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.4e-15
Identity = 54/101 (53.47%), Postives = 65/101 (64.36%), Query Frame = 1 

Query: 1   MGNCVEVLSRRR--EEEEMTTTATTTIMEKEERKGRVRIKVVLTKEELQWLMEQVQERGG 60
           MGNCVE   +R   EE ++     T    KEE K  +R+KVVLTKEEL+WL+ Q++ R G
Sbjct: 1   MGNCVETCLQREITEESQIGEDEKTVKFHKEEGKTNMRLKVVLTKEELEWLLLQLKFREG 60

Query: 61  KGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEVPDRMD 100
           K LEE LGEIE  R K      W+PSLESI E PEVP+ MD
Sbjct: 61  KNLEEFLGEIEKNRGK--NCSGWKPSLESITESPEVPEMMD 99

[Close]
BLAST of CmoCh04G007330 vs. TrEMBL
Match: A0A0V0H5I2_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1 

Query: 1   MGNCVEVLSRRR--EEEEMTTTATTTIMEKEERKGRVRIKVVLTKEELQWLMEQVQERGG 60
           MGNCVE   +R   EE ++     T    KEE K  +R+KVVLTKEEL+WL+ Q++ R G
Sbjct: 1   MGNCVETCLQRENTEESQIREDEKTVKFPKEEGKTNMRLKVVLTKEELEWLLLQLKFREG 60

Query: 61  KGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEVPDRMD 100
           K L E LGEIE  R K+     W+PSLESI E PEVP+ MD
Sbjct: 61  KNLGEFLGEIEKNRGKI--CSGWKPSLESITESPEVPEMMD 99

[Close]
BLAST of CmoCh04G007330 vs. TrEMBL
Match: I3T2F8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.1e-14
Identity = 50/110 (45.45%), Postives = 75/110 (68.18%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREE------------EEMTTTATTTIMEKEERKGR--VRIKVVLTKEEL 60
           MGNC+E  + R+++            EE T T ++  ++  + KG+  +R+K+VLTKEEL
Sbjct: 1   MGNCMETCTLRKQDAMRMQKKQQQKQEEDTKTRSSGFVKINDSKGKNGLRMKIVLTKEEL 60

Query: 61  QWLMEQVQERGGKGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEVPD 97
           +WLM Q+ E+GG  LE++LGEIE R +++  +GSW+PSLESI+E PE PD
Sbjct: 61  KWLMLQLNEKGGMKLEKVLGEIE-RGREIKVEGSWKPSLESIVEAPESPD 109

[Close]
BLAST of CmoCh04G007330 vs. NCBI nr
Match: gi|659102095|ref|XP_008451950.1| (PREDICTED: uncharacterized protein LOC103493097 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-25
Identity = 69/106 (65.09%), Postives = 83/106 (78.30%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREEEEMTTTATTTIMEKEERKGRVRIKVVLTKEELQWLMEQVQERGGKG 60
           MGNCVEVLSR+REEE  TTT +T  ME++E+KG +RIKVVL KEEL+WL EQ++E+GGKG
Sbjct: 1   MGNCVEVLSRQREEEGTTTTTSTREMEEKEKKGGMRIKVVLRKEELEWLTEQIKEKGGKG 60

Query: 61  LEELLGEIE-GRRKKVN-------EDGSWRPSLESIMEVPEVPDRM 99
           LEELL EIE GRR+K+           SW+PSLESIME PE+PD M
Sbjct: 61  LEELLEEIERGRREKLENYCSIQYSSVSWKPSLESIMECPEIPDHM 106

[Close]
BLAST of CmoCh04G007330 vs. NCBI nr
Match: gi|700198248|gb|KGN53406.1| (hypothetical protein Csa_4G052070 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 3.7e-24
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREEEEMTTTATTTIMEKEERKGRVRIKVVLTKEELQWLMEQVQERGGKG 60
           MGNCVEVLSR+REE+  TTT +T  ME+ E+KG +RIKVVL KEEL+WL EQ++E+GGK 
Sbjct: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60

Query: 61  LEELLGEIE-GRRKK------VNEDGSWRPSLESIMEVPEVPDRM 99
           LEELL EIE GRR+K      +  + SW+PSLESIME PE+PD M
Sbjct: 61  LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHM 105

[Close]
BLAST of CmoCh04G007330 vs. NCBI nr
Match: gi|388517277|gb|AFK46700.1| (unknown [Lotus japonicus])

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-14
Identity = 50/110 (45.45%), Postives = 75/110 (68.18%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREE------------EEMTTTATTTIMEKEERKGR--VRIKVVLTKEEL 60
           MGNC+E  + R+++            EE T T ++  ++  + KG+  +R+K+VLTKEEL
Sbjct: 1   MGNCMETCTLRKQDAMRMQKKQQQKQEEDTKTRSSGFVKINDSKGKNGLRMKIVLTKEEL 60

Query: 61  QWLMEQVQERGGKGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEVPD 97
           +WLM Q+ E+GG  LE++LGEIE R +++  +GSW+PSLESI+E PE PD
Sbjct: 61  KWLMLQLNEKGGMKLEKVLGEIE-RGREIKVEGSWKPSLESIVEAPESPD 109

[Close]
BLAST of CmoCh04G007330 vs. NCBI nr
Match: gi|645267350|ref|XP_008239031.1| (PREDICTED: uncharacterized protein LOC103337641 [Prunus mume])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREEEEMTTTATTTIMEKEERK--------------GRVRIKVVLTKEEL 60
           MGNCVE  + R + E+          E+EER+              G +R+K+VLTKEEL
Sbjct: 1   MGNCVETCTERHQGEDQMQQQKD---EQEERQNEIRFVKESNLSKDGNIRVKIVLTKEEL 60

Query: 61  QWLMEQVQERGGKGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEV 95
           QWLM Q+++RGGK LE++L EI+  R KV E   W+PSLESIME PEV
Sbjct: 61  QWLMIQLKDRGGKSLEDVLEEIQRSRAKVEE--GWKPSLESIMECPEV 103

[Close]
BLAST of CmoCh04G007330 vs. NCBI nr
Match: gi|697139471|ref|XP_009623824.1| (PREDICTED: uncharacterized protein LOC104114970 [Nicotiana tomentosiformis])

HSP 1 Score: 82.0 bits (201), Expect = 6.6e-13
Identity = 52/110 (47.27%), Postives = 68/110 (61.82%), Query Frame = 1 

Query: 1   MGNCVEVLSRRREEEEMT-----TTATTTIMEKEE------RKGRVRIKVVLTKEELQWL 60
           MGNCVE   +R   EE+      T   T    KEE       K  +R+K+VLTKEEL+WL
Sbjct: 1   MGNCVEACLQRENTEELRMQKQETEEKTGDFSKEEDIGMEKSKTNMRLKIVLTKEELEWL 60

Query: 61  MEQVQERGGKGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEVPDRMD 100
           + Q++ + GK LE++LGEIE  R K++    WRPSLESI E PE+P+ MD
Sbjct: 61  LLQLKFKEGKNLEDVLGEIERSRGKIS--CGWRPSLESITESPEIPEMMD 108

The following BLAST results are available for this feature:
BLAST of CmoCh04G007330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZU9_CUCSA2.6e-2463.81Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052070 PE=4 SV=1[more]
M1AWN7_SOLTU1.7e-1553.47Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012280 PE=4 SV=1[more]
K4CPN3_SOLLC6.4e-1553.47Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A0V0H5I2_SOLCH1.4e-1452.48Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
I3T2F8_LOTJA4.1e-1445.45Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of CmoCh04G007330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102095|ref|XP_008451950.1|2.0e-2565.09PREDICTED: uncharacterized protein LOC103493097 [Cucumis melo][more]
gi|700198248|gb|KGN53406.1|3.7e-2463.81hypothetical protein Csa_4G052070 [Cucumis sativus][more]
gi|388517277|gb|AFK46700.1|5.9e-1445.45unknown [Lotus japonicus][more]
gi|645267350|ref|XP_008239031.1|1.3e-1348.15PREDICTED: uncharacterized protein LOC103337641 [Prunus mume][more]
gi|697139471|ref|XP_009623824.1|6.6e-1347.27PREDICTED: uncharacterized protein LOC104114970 [Nicotiana tomentosiformis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G007330.1CmoCh04G007330.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35704FAMILY NOT NAMEDcoord: 5..103
score: 2.6
NoneNo IPR availablePANTHERPTHR35704:SF1SUBFAMILY NOT NAMEDcoord: 5..103
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G007330CmaCh04G006880Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G007330Cla012803Watermelon (97103) v1cmowmB688
CmoCh04G007330ClCG07G011620Watermelon (Charleston Gray)cmowcgB672
CmoCh04G007330Cp4.1LG01g00440Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G007330CsaV3_4G006590Cucumber (Chinese Long) v3cmocucB0833
CmoCh04G007330Cla97C07G138360Watermelon (97103) v2cmowmbB750
CmoCh04G007330Bhi01G002298Wax gourdcmowgoB0850
CmoCh04G007330Carg13070Silver-seed gourdcarcmoB0058
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G007330Melon (DHL92) v3.6.1cmomedB789
CmoCh04G007330Silver-seed gourdcarcmoB0492
CmoCh04G007330Silver-seed gourdcarcmoB0804
CmoCh04G007330Cucumber (Chinese Long) v3cmocucB0860
CmoCh04G007330Watermelon (97103) v2cmowmbB677
CmoCh04G007330Wax gourdcmowgoB0825
CmoCh04G007330Cucurbita moschata (Rifu)cmocmoB264
CmoCh04G007330Cucurbita moschata (Rifu)cmocmoB285
CmoCh04G007330Cucumber (Gy14) v1cgycmoB0833
CmoCh04G007330Cucurbita maxima (Rimu)cmacmoB311
CmoCh04G007330Cucurbita maxima (Rimu)cmacmoB337
CmoCh04G007330Wild cucumber (PI 183967)cmocpiB715
CmoCh04G007330Wild cucumber (PI 183967)cmocpiB734
CmoCh04G007330Cucumber (Chinese Long) v2cmocuB705
CmoCh04G007330Cucumber (Chinese Long) v2cmocuB728
CmoCh04G007330Melon (DHL92) v3.5.1cmomeB628
CmoCh04G007330Melon (DHL92) v3.5.1cmomeB686
CmoCh04G007330Melon (DHL92) v3.5.1cmomeB695
CmoCh04G007330Watermelon (Charleston Gray)cmowcgB637
CmoCh04G007330Watermelon (97103) v1cmowmB709
CmoCh04G007330Cucurbita pepo (Zucchini)cmocpeB661
CmoCh04G007330Cucurbita pepo (Zucchini)cmocpeB667
CmoCh04G007330Bottle gourd (USVL1VR-Ls)cmolsiB611
CmoCh04G007330Bottle gourd (USVL1VR-Ls)cmolsiB693
CmoCh04G007330Melon (DHL92) v3.6.1cmomedB779
CmoCh04G007330Cucumber (Gy14) v2cgybcmoB521
CmoCh04G007330Cucumber (Gy14) v2cgybcmoB639
CmoCh04G007330Melon (DHL92) v3.6.1cmomedB717