Carg13070 (gene) Silver-seed gourd

Overview
NameCarg13070
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDeoxyhypusine synthase
LocationCucurbita_argyrosperma_scaffold_101 : 137252 .. 137566 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCGTCGAAGTTTTGTCTAGGCGGAGTGAAGAAGAAGAGACGACGACGACGGGGACTACGACAATGATGGAGAAAGAAGAAAGGAAAGGAGGGGGAGTGAGGATAAAGGTAGTGTTGACGAAAGAGGAGCTGCAATGGCTAATGGAGCAAGTTCAGGAGCGAGGAGGGAAAGGGTTAGAAGAATTGTTGGGAGAGATCGAGGGACGAAGAAAAAAAGTAAACGAAGATGGTTCGTGGAGACCTTCTTTGGAGAGTATTATGGAAGTTCCCGAAGTTCTCGATCGGATGGAGTCACTTTCTTCGTAA

mRNA sequence

ATGGGAAACTGCGTCGAAGTTTTGTCTAGGCGGAGTGAAGAAGAAGAGACGACGACGACGGGGACTACGACAATGATGGAGAAAGAAGAAAGGAAAGGAGGGGGAGTGAGGATAAAGGTAGTGTTGACGAAAGAGGAGCTGCAATGGCTAATGGAGCAAGTTCAGGAGCGAGGAGGGAAAGGGTTAGAAGAATTGTTGGGAGAGATCGAGGGACGAAGAAAAAAAGTAAACGAAGATGGTTCGTGGAGACCTTCTTTGGAGAGTATTATGGAAGTTCCCGAAGTTCTCGATCGGATGGAGTCACTTTCTTCGTAA

Coding sequence (CDS)

ATGGGAAACTGCGTCGAAGTTTTGTCTAGGCGGAGTGAAGAAGAAGAGACGACGACGACGGGGACTACGACAATGATGGAGAAAGAAGAAAGGAAAGGAGGGGGAGTGAGGATAAAGGTAGTGTTGACGAAAGAGGAGCTGCAATGGCTAATGGAGCAAGTTCAGGAGCGAGGAGGGAAAGGGTTAGAAGAATTGTTGGGAGAGATCGAGGGACGAAGAAAAAAAGTAAACGAAGATGGTTCGTGGAGACCTTCTTTGGAGAGTATTATGGAAGTTCCCGAAGTTCTCGATCGGATGGAGTCACTTTCTTCGTAA

Protein sequence

MGNCVEVLSRRSEEEETTTTGTTTMMEKEERKGGGVRIKVVLTKEELQWLMEQVQERGGKGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEVLDRMESLSS
Homology
[Close]
BLAST of Carg13070 vs. NCBI nr
Match: XP_022942038.1 (uncharacterized protein LOC111447226 [Cucurbita moschata])

HSP 1 Score: 134.8 bits (338), Expect = 1.7e-28
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 1   MGNCVEVLSXXXXXXXXXXXXXXXXXXXXXXXXXXVRIKVVLTKEELQWLMEQVQERGGK 60
           MGNCVEVLS XXXXXXXXXXXXXXXXXXXXXXX  VRIKVVLTKEELQWLMEQVQERGGK
Sbjct: 1   MGNCVEVLS-XXXXXXXXXXXXXXXXXXXXXXXGRVRIKVVLTKEELQWLMEQVQERGGK 60

Query: 61  GLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEVLDRMESLSS 105
           GLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEV DRM+SLSS
Sbjct: 61  GLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEVPDRMDSLSS 103

[Close]
BLAST of Carg13070 vs. NCBI nr
Match: XP_023543788.1 (uncharacterized protein LOC111803552 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-26
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 1   MGNCVEVLSXXXXXXXXXXXXXXXXXXXXXXXXXXVRIKVVLTKEELQWLMEQVQERGGK 60
           MGNCVEVLS XXXXXXXXXXXXXXXXXXXXXXXXXVRIKVVLTKEELQWLMEQVQERGGK
Sbjct: 1   MGNCVEVLS-XXXXXXXXXXXXXXXXXXXXXXXXXVRIKVVLTKEELQWLMEQVQERGGK 60

Query: 61  GLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEVLDRMESLSS 105
           GLEELLGEIE RR+KV+EDGSWRPSLESIMEVPEV DRME LSS
Sbjct: 61  GLEELLGEIERRRRKVDEDGSWRPSLESIMEVPEVPDRMEPLSS 103

[Close]
BLAST of Carg13070 vs. NCBI nr
Match: KGN53406.1 (hypothetical protein Csa_4G052070 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 7.5e-13
Identity = 76/106 (71.70%), Postives = 86/106 (81.13%), Query Frame = 0 

Query: 1   MGNCVEVLSXXXXXXXXXXXXXXXXXXXXXXXXXXVRIKVVLTKEELQWLMEQVQERGGK 60
           MGNCVEVLS   XXXXXXXXXXXXXXXXXXXXXXX+RIKVVL KEEL+WL EQ++E+GGK
Sbjct: 1   MGNCVEVLS-RQXXXXXXXXXXXXXXXXXXXXXXXMRIKVVLRKEELEWLTEQIKEKGGK 60

Query: 61  GLEELLGEIE-GRRKK------VNEDGSWRPSLESIMEVPEVLDRM 100
            LEELL EIE GRR+K      +  + SW+PSLESIME PE+ D M
Sbjct: 61  CLEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHM 105

[Close]
BLAST of Carg13070 vs. NCBI nr
Match: XP_008239031.1 (PREDICTED: uncharacterized protein LOC103337641 [Prunus mume])

HSP 1 Score: 77.8 bits (190), Expect = 2.4e-11
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 36  VRIKVVLTKEELQWLMEQVQERGGKGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEV 95
           +R+K+VLTKEELQWLM Q+++RGGK LE++L EI+  R KV E   W+PSLESIME PEV
Sbjct: 46  IRVKIVLTKEELQWLMIQLKDRGGKSLEDVLEEIQRSRAKVEE--GWKPSLESIMECPEV 103

[Close]
BLAST of Carg13070 vs. NCBI nr
Match: XP_007209801.2 (uncharacterized protein LOC18776068 [Prunus persica] >ONI07431.1 hypothetical protein PRUPE_5G120200 [Prunus persica])

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 36  VRIKVVLTKEELQWLMEQVQERGGKGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEV 95
           VR+K+VLTKEEL+WLM Q+++RGGK LE++L EI+  R KV E   W+PSLESIME PEV
Sbjct: 46  VRVKIVLTKEELEWLMLQLKDRGGKSLEDVLEEIQRSRAKVEE--GWKPSLESIMECPEV 103

[Close]
BLAST of Carg13070 vs. TrEMBL
Match: tr|A0A0A0KZU9|A0A0A0KZU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052070 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.0e-13
Identity = 76/106 (71.70%), Postives = 86/106 (81.13%), Query Frame = 0 

Query: 1   MGNCVEVLSXXXXXXXXXXXXXXXXXXXXXXXXXXVRIKVVLTKEELQWLMEQVQERGGK 60
           MGNCVEVLS   XXXXXXXXXXXXXXXXXXXXXXX+RIKVVL KEEL+WL EQ++E+GGK
Sbjct: 1   MGNCVEVLS-RQXXXXXXXXXXXXXXXXXXXXXXXMRIKVVLRKEELEWLTEQIKEKGGK 60

Query: 61  GLEELLGEIE-GRRKK------VNEDGSWRPSLESIMEVPEVLDRM 100
            LEELL EIE GRR+K      +  + SW+PSLESIME PE+ D M
Sbjct: 61  CLEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHM 105

[Close]
BLAST of Carg13070 vs. TrEMBL
Match: tr|W9RFV8|W9RFV8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001388 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 36  VRIKVVLTKEELQWLMEQVQERGGKGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEV 95
           +R+K+V+TKEEL+WLM Q+  +GGK LE++LGEIE  R KV  + SW+PSLESIME PEV
Sbjct: 55  LRVKIVVTKEELEWLMVQLNNKGGKSLEDVLGEIERGRAKV--EVSWKPSLESIMECPEV 114

Query: 96  LD 98
           ++
Sbjct: 115 VE 114

[Close]
BLAST of Carg13070 vs. TrEMBL
Match: tr|A0A251P786|A0A251P786_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G120200 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 36  VRIKVVLTKEELQWLMEQVQERGGKGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEV 95
           VR+K+VLTKEEL+WLM Q+++RGGK LE++L EI+  R KV E   W+PSLESIME PEV
Sbjct: 46  VRVKIVLTKEELEWLMLQLKDRGGKSLEDVLEEIQRSRAKVEE--GWKPSLESIMECPEV 103

[Close]
BLAST of Carg13070 vs. TrEMBL
Match: tr|M5WW48|M5WW48_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa014016mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 36 VRIKVVLTKEELQWLMEQVQERGGKGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEV 95
          VR+K+VLTKEEL+WLM Q+++RGGK LE++L EI+  R KV E   W+PSLESIME PEV
Sbjct: 29 VRVKIVLTKEELEWLMLQLKDRGGKSLEDVLEEIQRSRAKVEE--GWKPSLESIMECPEV 86

[Close]
BLAST of Carg13070 vs. TrEMBL
Match: tr|A0A2N9J5Q3|A0A2N9J5Q3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59807 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.0e-11
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 36 VRIKVVLTKEELQWLMEQVQERGGKGLEELLGEIEGRRKKVNEDGSWRPSLESIMEVPEV 95
          +R+K+VLTKEELQWLM Q+Q++ GK LE++ GEIE  R+K      W+PSLESIME PEV
Sbjct: 40 IRVKIVLTKEELQWLMLQLQDKQGKKLEDVFGEIERAREKAE---GWKPSLESIMETPEV 98

Query: 96 LD 98
           D
Sbjct: 100 HD 98

The following BLAST results are available for this feature:
BLAST of Carg13070 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022942038.11.7e-2895.19uncharacterized protein LOC111447226 [Cucurbita moschata][more]
XP_023543788.12.0e-2694.23uncharacterized protein LOC111803552 [Cucurbita pepo subsp. pepo][more]
KGN53406.17.5e-1371.70hypothetical protein Csa_4G052070 [Cucumis sativus][more]
XP_008239031.12.4e-1165.00PREDICTED: uncharacterized protein LOC103337641 [Prunus mume][more]
XP_007209801.24.1e-1165.00uncharacterized protein LOC18776068 [Prunus persica] >ONI07431.1 hypothetical pr... [more]
BLAST of Carg13070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg13070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg13070 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZU9|A0A0A0KZU9_CUCSA5.0e-1371.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052070 PE=4 SV=1[more]
tr|W9RFV8|W9RFV8_9ROSA2.7e-1161.29Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001388 PE=4 SV=1[more]
tr|A0A251P786|A0A251P786_PRUPE2.7e-1165.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G120200 PE=4 SV=1[more]
tr|M5WW48|M5WW48_PRUPE2.7e-1165.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa014016mg PE=4 SV=1[more]
tr|A0A2N9J5Q3|A0A2N9J5Q3_FAGSY8.0e-1161.29Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59807 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13070-RACarg13070-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availablePANTHERPTHR35704FAMILY NOT NAMEDcoord: 1..97
NoneNo IPR availablePANTHERPTHR35704:SF1SUBFAMILY NOT NAMEDcoord: 1..97

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg13070Cla012803Watermelon (97103) v1carwmB0043
Carg13070Csa4G052070Cucumber (Chinese Long) v2carcuB0044
Carg13070MELO3C016294Melon (DHL92) v3.5.1carmeB0043
Carg13070ClCG07G011620Watermelon (Charleston Gray)carwcgB0049
Carg13070CSPI04G06380Wild cucumber (PI 183967)carcpiB0048
Carg13070CmaCh04G006880Cucurbita maxima (Rimu)carcmaB0055
Carg13070CmoCh04G007330Cucurbita moschata (Rifu)carcmoB0058
Carg13070Cp4.1LG01g00440Cucurbita pepo (Zucchini)carcpeB0061
Carg13070MELO3C016294.2Melon (DHL92) v3.6.1carmedB0044
Carg13070CsaV3_4G006590Cucumber (Chinese Long) v3carcucB0049
Carg13070Cla97C07G138360Watermelon (97103) v2carwmbB0045
Carg13070Bhi01G002298Wax gourdcarwgoB0049
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg13070Silver-seed gourdcarcarB048
Carg13070Silver-seed gourdcarcarB049
Carg13070Cucumber (Gy14) v2carcgybB0044
Carg13070Cucumber (Gy14) v2carcgybB0048
Carg13070Cucumber (Gy14) v1carcgyB0056
Carg13070Cucurbita maxima (Rimu)carcmaB0051
Carg13070Cucurbita maxima (Rimu)carcmaB0054
Carg13070Cucurbita moschata (Rifu)carcmoB0053
Carg13070Cucurbita moschata (Rifu)carcmoB0056
Carg13070Cucurbita pepo (Zucchini)carcpeB0056
Carg13070Cucurbita pepo (Zucchini)carcpeB0058
Carg13070Wild cucumber (PI 183967)carcpiB0052
Carg13070Cucumber (Chinese Long) v2carcuB0048
Carg13070Cucumber (Chinese Long) v3carcucB0053
Carg13070Bottle gourd (USVL1VR-Ls)carlsiB038
Carg13070Bottle gourd (USVL1VR-Ls)carlsiB040
Carg13070Melon (DHL92) v3.5.1carmeB0040
Carg13070Melon (DHL92) v3.5.1carmeB0045
Carg13070Melon (DHL92) v3.6.1carmedB0041
Carg13070Melon (DHL92) v3.6.1carmedB0046
Carg13070Watermelon (Charleston Gray)carwcgB0044
Carg13070Watermelon (97103) v1carwmB0049
Carg13070Watermelon (97103) v2carwmbB0041
Carg13070Wax gourdcarwgoB0048