CmoCh20G008670 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G008670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Organ-specific P4
Location	Cmo_Chr20 : 4389400 .. 4390095 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTGGCTGTCCAACATGAAGCTGTCTCTTGCTTTCTTTCTTCTCATTTCTCTTGTTCTGGTAAGCTTTCGATCGATTTGATCGGTTTAGAGTTATAAATATTACGATCGAAGTTAAAAAAATTTGATTTTGATTTCGTTAGCTGAAGAACGAAGAGTTATCGATCGATGGTTTTCGTTTTCGTTACGAAATTTGACGAGTTTTTTTGTATAATTTAGTTCGTAGATGTTAGCCATGGAAGCAGGAAAGATCAAGGGAAGTATTGGAAAAAGATGATGAAAAATGAAGAAATTCCAGAGATGTTGAAAGAGCTGTTGTTTGATGATTCAATGGTGGAGAATCAAAAGCAACGGTTTATGAACAACTTTGATCCTCATCCAAATGCTATAATATACCATGCTCATGCTCATGCTCATGGCCATGGGGCTGCTACTCCTACGCGTAATATTGATATCAAATCCAACCCCACTGTTGCCAATTCAGCACCATGATGATACCCTTCCAAGCCCCATGTGTGCATGTCTGCCGGGGGGAGTGTTATGGTTAAGATCAACTTACTAGGCTTTTCATGTTTGTGTAAATTAATACATTTAGTGTGTGGTTTCTTTTGATGGGTTTTTGGGGTTTGAGGTCTTGGGATTGTTCTTGTGTTTGTATGATGAATTGGGGTTGTTTGATACAATGATCGACACGTGG

mRNA sequence

CTGTGGCTGTCCAACATGAAGCTGTCTCTTGCTTTCTTTCTTCTCATTTCTCTTGTTCTGTTCGTAGATGTTAGCCATGGAAGCAGGAAAGATCAAGGGAAGTATTGGAAAAAGATGATGAAAAATGAAGAAATTCCAGAGATGTTGAAAGAGCTGTTGTTTGATGATTCAATGGTGGAGAATCAAAAGCAACGGTTTATGAACAACTTTGATCCTCATCCAAATGCTATAATATACCATGCTCATGCTCATGCTCATGGCCATGGGGCTGCTACTCCTACGCGTAATATTGATATCAAATCCAACCCCACTGTTGCCAATTCAGCACCATGATGATACCCTTCCAAGCCCCATGTGTGCATGTCTGCCGGGGGGAGTGTTATGGTTAAGATCAACTTACTAGGCTTTTCATGTTTGTGTAAATTAATACATTTAGTGTGTGGTTTCTTTTGATGGGTTTTTGGGGTTTGAGGTCTTGGGATTGTTCTTGTGTTTGTATGATGAATTGGGGTTGTTTGATACAATGATCGACACGTGG

Coding sequence (CDS)

ATGAAGCTGTCTCTTGCTTTCTTTCTTCTCATTTCTCTTGTTCTGTTCGTAGATGTTAGCCATGGAAGCAGGAAAGATCAAGGGAAGTATTGGAAAAAGATGATGAAAAATGAAGAAATTCCAGAGATGTTGAAAGAGCTGTTGTTTGATGATTCAATGGTGGAGAATCAAAAGCAACGGTTTATGAACAACTTTGATCCTCATCCAAATGCTATAATATACCATGCTCATGCTCATGCTCATGGCCATGGGGCTGCTACTCCTACGCGTAATATTGATATCAAATCCAACCCCACTGTTGCCAATTCAGCACCATGA

Homology

[Close]

BLAST of CmoCh20G008670 vs. TrEMBL
Match: A0A0A0LP62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G245500 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.4e-22
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 1


Query: 1  MKLSLAFFLLISLVLFVDVSHG-SRKDQGKYWKKMMKNEEIPEMLKELLFD----DSMVE 60
          MKLS+AFF L+SL+L  D++HG SRK++G+YWKK+MK E +PEMLKELL +     SMVE
Sbjct: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60

Query: 61 -----NQKQRFMNNFDPHPNAIIYHAHAHAH 82
                QK+ F+ NFDPHPNAIIYHAHAHAH
Sbjct: 61 YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAH 91

[Close]

BLAST of CmoCh20G008670 vs. TrEMBL
Match: V7AE51_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G046400g PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.2e-10
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1   MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMV-ENQKQ 60
           MK   AFFL+ SL+L V++S+ +RKD G YWK MM  + +PE +K+LL  D  V +  K 
Sbjct: 33  MKSYFAFFLIFSLLLVVNLSY-ARKDMGDYWKNMMNGQPMPEAIKDLLVQDPQVSDTVKD 92

Query: 61  RFMNNFDPHPNAIIYHAH 78
            F+ +FD  PN I+YH H
Sbjct: 93  HFIRDFDIRPNVILYHTH 109

[Close]

BLAST of CmoCh20G008670 vs. TrEMBL
Match: W9R0Z1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026929 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-09
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 1  MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVEN---- 60
          MK   AFF+L S++L  ++S+ +RKD G+YW  +MK++ IPE +++L +D  +  +    
Sbjct: 1  MKSIFAFFVLFSILLVGNISY-ARKDAGEYWNSIMKDQPIPEAIRDLFYDQDLPSDLTGP 60

Query: 61 -QKQRFMNNFDPHPNAIIYHAHAHAHGHGAATPT 90
           +  RF+ +FD  PN IIYH+HA   G     P+
Sbjct: 61 TKHDRFVRDFDVQPNVIIYHSHAQPQGEDNHKPS 93

[Close]

BLAST of CmoCh20G008670 vs. TrEMBL
Match: C6T006_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1


Query: 1  MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVEN-QKQ 60
          MK   AFF++ SL L V++S+ +RKD G YWK MM  + +PE +K+LL  D  V +  K 
Sbjct: 10 MKSFFAFFVVFSL-LVVNLSY-ARKDMGDYWKNMMNGQPMPEAIKDLLVQDPQVSDAMKD 69

Query: 61 RFMNNFDPHPNAIIYHAHAHAHGH 84
           F+ +FD  PN I+YH H   H H
Sbjct: 70 HFIRDFDIKPNVILYHTHVVPHKH 91

[Close]

BLAST of CmoCh20G008670 vs. TrEMBL
Match: A0A0B2RZA1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_020511 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1


Query: 1  MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVEN-QKQ 60
          MK   AFF++ SL L V++S+ +RKD G YWK MM  + +PE +K+LL  D  V +  K 
Sbjct: 18 MKSFFAFFVVFSL-LVVNLSY-ARKDMGDYWKNMMNGQPMPEAIKDLLVQDPQVSDAMKD 77

Query: 61 RFMNNFDPHPNAIIYHAHAHAHGH 84
           F+ +FD  PN I+YH H   H H
Sbjct: 78 HFIRDFDIKPNVILYHTHVVPHKH 99

[Close]

BLAST of CmoCh20G008670 vs. TAIR10
Match: AT1G49310.1 (AT1G49310.1 unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-09
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1


Query: 5  LAFFLLISLVLFVDVSHGSRKDQG-KYWKKMMKNEEIPEMLKELLFDDSMVENQKQRFMN 64
          + F +L+S +LFV++S G       +YWKKMMKNE +PE +KELL  ++     ++RF+ 
Sbjct: 9  VVFIVLLSFLLFVNLSEGRTGGVAEEYWKKMMKNEPLPEPIKELL--NNPFRTAQERFIQ 68

Query: 65 NFDPHPNAIIYH 76
          NFD     IIYH
Sbjct: 69 NFDTKSVVIIYH 78

[Close]

BLAST of CmoCh20G008670 vs. NCBI nr
Match: gi|659116146|ref|XP_008457928.1| (PREDICTED: organ-specific protein P4 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-22
Identity = 66/115 (57.39%), Postives = 80/115 (69.57%), Query Frame = 1


Query: 1   MKLSLAFFLLISLVLFVDV--SHG-SRKDQGKYWKKMMKNEEIPEMLKELLFDD---SMV 60
           MKLS+AFF L+SL+L  D+  SHG SRK++G+YWKK+MK E +PEMLKELL +D   S+V
Sbjct: 30  MKLSIAFFFLLSLLLLGDIAISHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDSSIV 89

Query: 61  E----NQKQRFMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIKSNPTVANSAP 106
           E     QK+ F  NFDPHPNAIIYHAHAHAH H            SNPT+ N +P
Sbjct: 90  EYNNKQQKEHFTTNFDPHPNAIIYHAHAHAHAH-----------NSNPTLPNLSP 133

[Close]

BLAST of CmoCh20G008670 vs. NCBI nr
Match: gi|449462246|ref|XP_004148852.1| (PREDICTED: uncharacterized protein LOC101213460 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 1


Query: 1  MKLSLAFFLLISLVLFVDVSHG-SRKDQGKYWKKMMKNEEIPEMLKELLFD----DSMVE 60
          MKLS+AFF L+SL+L  D++HG SRK++G+YWKK+MK E +PEMLKELL +     SMVE
Sbjct: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60

Query: 61 -----NQKQRFMNNFDPHPNAIIYHAHAHAH 82
                QK+ F+ NFDPHPNAIIYHAHAHAH
Sbjct: 61 YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAH 91

[Close]

BLAST of CmoCh20G008670 vs. NCBI nr
Match: gi|593144281|ref|XP_007131848.1| (hypothetical protein PHAVU_011G046400g [Phaseolus vulgaris])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1   MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMV-ENQKQ 60
           MK   AFFL+ SL+L V++S+ +RKD G YWK MM  + +PE +K+LL  D  V +  K 
Sbjct: 33  MKSYFAFFLIFSLLLVVNLSY-ARKDMGDYWKNMMNGQPMPEAIKDLLVQDPQVSDTVKD 92

Query: 61  RFMNNFDPHPNAIIYHAH 78
            F+ +FD  PN I+YH H
Sbjct: 93  HFIRDFDIRPNVILYHTH 109

[Close]

BLAST of CmoCh20G008670 vs. NCBI nr
Match: gi|703097742|ref|XP_010096195.1| (hypothetical protein L484_026929 [Morus notabilis])

HSP 1 Score: 69.3 bits (168), Expect = 4.5e-09
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 1  MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVEN---- 60
          MK   AFF+L S++L  ++S+ +RKD G+YW  +MK++ IPE +++L +D  +  +    
Sbjct: 1  MKSIFAFFVLFSILLVGNISY-ARKDAGEYWNSIMKDQPIPEAIRDLFYDQDLPSDLTGP 60

Query: 61 -QKQRFMNNFDPHPNAIIYHAHAHAHGHGAATPT 90
           +  RF+ +FD  PN IIYH+HA   G     P+
Sbjct: 61 TKHDRFVRDFDVQPNVIIYHSHAQPQGEDNHKPS 93

[Close]

BLAST of CmoCh20G008670 vs. NCBI nr
Match: gi|1021499744|ref|XP_016193150.1| (PREDICTED: uncharacterized protein LOC107634084 [Arachis ipaensis])

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = 1


Query: 1   MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELL-FDDSMVENQ-- 60
           MK   AFF++ SL+L  ++S+G ++  G+YWKKM+K + +PE +KE+L  +D  + +   
Sbjct: 1   MKPFFAFFIVFSLLLGANLSYGRKELVGEYWKKMIKGQSMPEAIKEILVVEDPQISSSDS 60

Query: 61  ---KQRFMNNFDPHPNAIIYHAHAHAHGHGAATPTRNIDIK 96
              K  F+ +FD  PN I+YH+H     H    P  N +++
Sbjct: 61  SRTKDNFIRDFDIKPNVILYHSHKQKQKHNHKNPFLNNNLE 101

The following BLAST results are available for this feature:

BLAST of CmoCh20G008670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G008670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP62_CUCSA	9.4e-22	63.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G245500 PE=4 SV=1	[more]
V7AE51_PHAVU	8.2e-10	47.44	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G046400g PE=4 SV=1	[more]
W9R0Z1_9ROSA	3.1e-09	38.30	Uncharacterized protein OS=Morus notabilis GN=L484_026929 PE=4 SV=1	[more]
C6T006_SOYBN	1.2e-08	45.24	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0B2RZA1_GLYSO	1.2e-08	45.24	Uncharacterized protein OS=Glycine soja GN=glysoja_020511 PE=4 SV=1	[more]

BLAST of CmoCh20G008670 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49310.1	4.8e-09	44.44	unknown protein	[more]

BLAST of CmoCh20G008670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116146\|ref\|XP_008457928.1\|	1.6e-22	57.39	PREDICTED: organ-specific protein P4 [Cucumis melo]	[more]
gi\|449462246\|ref\|XP_004148852.1\|	1.3e-21	63.74	PREDICTED: uncharacterized protein LOC101213460 [Cucumis sativus]	[more]
gi\|593144281\|ref\|XP_007131848.1\|	1.2e-09	47.44	hypothetical protein PHAVU_011G046400g [Phaseolus vulgaris]	[more]
gi\|703097742\|ref\|XP_010096195.1\|	4.5e-09	38.30	hypothetical protein L484_026929 [Morus notabilis]	[more]
gi\|1021499744\|ref\|XP_016193150.1\|	1.0e-08	35.64	PREDICTED: uncharacterized protein LOC107634084 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024489	Organ_specific_prot

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G008670.1	CmoCh20G008670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024489	Organ specific protein	PRODOM	PD010796		coord: 23..74 score: 5.
IPR024489	Organ specific protein	PFAM	PF10950	DUF2775	coord: 25..51 score: 1.
None	No IPR available	PANTHER	PTHR33731	FAMILY NOT NAMED	coord: 1..77 score: 2.2
None	No IPR available	PANTHER	PTHR33731:SF3	SUBFAMILY NOT NAMED	coord: 1..77 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G008670	Cucsa.109690	Cucumber (Gy14) v1	cgycmoB0252
CmoCh20G008670	CmaCh02G004070	Cucurbita maxima (Rimu)	cmacmoB606
CmoCh20G008670	CmaCh20G008560	Cucurbita maxima (Rimu)	cmacmoB551
CmoCh20G008670	Csa2G245500	Cucumber (Chinese Long) v2	cmocuB531
CmoCh20G008670	ClCG11G004490	Watermelon (Charleston Gray)	cmowcgB476
CmoCh20G008670	CSPI02G12120	Wild cucumber (PI 183967)	cmocpiB536
CmoCh20G008670	Lsi10G003560	Bottle gourd (USVL1VR-Ls)	cmolsiB491
CmoCh20G008670	Cp4.1LG05g12690	Cucurbita pepo (Zucchini)	cmocpeB534
CmoCh20G008670	Cp4.1LG16g02360	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G008670	MELO3C020982.2	Melon (DHL92) v3.6.1	cmomedB574
CmoCh20G008670	CsaV3_2G014630	Cucumber (Chinese Long) v3	cmocucB0637
CmoCh20G008670	Cla97C11G211230	Watermelon (97103) v2	cmowmbB544
CmoCh20G008670	Bhi10G001629	Wax gourd	cmowgoB0679
CmoCh20G008670	CsGy2G012110	Cucumber (Gy14) v2	cgybcmoB209
CmoCh20G008670	Carg22951	Silver-seed gourd	carcmoB1203
CmoCh20G008670	Carg23642	Silver-seed gourd	carcmoB1073

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh20G008670	CmoCh02G004110	Cucurbita moschata (Rifu)	cmocmoB404

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G008670	Cucurbita maxima (Rimu)	cmacmoB518
CmoCh20G008670	Melon (DHL92) v3.5.1	cmomeB501
CmoCh20G008670	Melon (DHL92) v3.5.1	cmomeB503
CmoCh20G008670	Watermelon (Charleston Gray)	cmowcgB485
CmoCh20G008670	Watermelon (97103) v1	cmowmB516
CmoCh20G008670	Watermelon (97103) v1	cmowmB534
CmoCh20G008670	Cucurbita pepo (Zucchini)	cmocpeB514
CmoCh20G008670	Bottle gourd (USVL1VR-Ls)	cmolsiB500
CmoCh20G008670	Melon (DHL92) v3.6.1	cmomedB579
CmoCh20G008670	Watermelon (97103) v2	cmowmbB550
CmoCh20G008670	Wax gourd	cmowgoB0677
CmoCh20G008670	Cucurbita moschata (Rifu)	cmocmoB382