CmoCh02G004110 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G004110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Organ-specific P4
Location	Cmo_Chr02 : 2125528 .. 2127097 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTTCTGCTGCTTTCTTCCTCCTTTTTCTTATCCTGGTAAATTTTTCACATTCATAACTCGTTTTAACATATTTTGTTCTCGGTATCACGTTTTTTCTAAACGATAAAAGTGATTTTTGGACATTTTATTCTCAAACGTCTTTTTTTTTTTACTACGAAAGGTAAAACGTATCGATAATGTTATTACATTGAACGGTGCGTTAATCCTTTGAATCTAGTACCAACGAGTATCGTTTCTCCTAGAACAACGTTGTCTTTCAGATCTTTCAACTAGACAAGCTGCTTTTGCTAAAACTTGAGCGGTTTTCTAAAAACTTGTTTTGGGTATGAAAAAAATGAGTATTTAGAGATGTTTTTGTTATTCCTAATACTATGGCTCGGCTACTGATCGCTTCTTTTAAAGGACACCTTGTTTGTTTCACTTACAACAGTTAGTTCTCCCGGTCAAAAAAAACATTAGACATTTCATTTTATGAAACCAACGCTCTTGACATTAGTTGACGTACAAGAATTTATATATGTCGATATCGATCTCCACCCCTTAACCTTTTTTATCTTATTAACTAAAGAAACAAGACTTTGAACGGTAGTTAGTTCAACACCGATAATAAATTTTTAAAGAATTCCGAAGCACCCATCCCAAGGTACAATTCCCAAAATCCCTAGAATATATATATTTATTTATTTAATTTCATAATTATTTTTAATTATTTATTCTTCCGATACTGTTAAAAATAATTTTTTATTTTTAAGTTAAATTTTTGAAAATGAACAAATAGATTTTTGACGACATTTTATTTTATTAGAAACAAAAAATTGAATAAATAACTTAGAACAACTCGAATTAACTTAATCGTTTGGGTTGAAAAAATTTACAACTGAAACAATTAGGTTGAGTCTAAATAACGTCACAACCTGACCCAACTCGACCCGACTAAATCCAGCTTGAACAATTGAGTTGAATCTGAAAAAATATTCCAACCCGACCAAATTCAATCCACGTACGCCTTTTTTTTTTTTTTTTTGGTACTGATTTTGGGCATCACAGCTAGCAAATGTAAGCCATGCAAGGAAGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATCCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGTGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCATGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGATCATCATAGCATCCTGTCCACCATGACTTGTGTCAAGAGGCTTCATGTTTAGTTTGTGTAAATTATTATAGCTCTCGAATTGATATGGGTTTCTCTCCATCTTTGATCTCTTCTTGTTTGTTATATGATATATTAATACTATTTCAAGTTTTGTGTGTTTAATTTGTGTTGTAATCTATATGGGTATTTTCTTTTTAACTTTATAAGATTTGGGTCGTGGTTCAAATATTCACTTATAAGTTCAGATGTAAGTTCAGATGGGTTGGTCTGAGA

mRNA sequence

ATGAAGCTTTCTGCTGCTTTCTTCCTCCTTTTTCTTATCCTGCTAGCAAATGTAAGCCATGCAAGGAAGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATCCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGTGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCATGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGATCATCATAGCATCCTGTCCACCATGACTTGTGTCAAGAGGCTTCATGTTTAGTTTGTGTAAATTATTATAGCTCTCGAATTGATATGGGTTTCTCTCCATCTTTGATCTCTTCTTGTTTGTTATATGATATATTAATACTATTTCAAGTTTTGTGTGTTTAATTTGTGTTGTAATCTATATGGGTATTTTCTTTTTAACTTTATAAGATTTGGGTCGTGGTTCAAATATTCACTTATAAGTTCAGATGTAAGTTCAGATGGGTTGGTCTGAGA

Coding sequence (CDS)

ATGAAGCTTTCTGCTGCTTTCTTCCTCCTTTTTCTTATCCTGCTAGCAAATGTAAGCCATGCAAGGAAGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATCCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGTGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCATGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGA

Homology

[Close]

BLAST of CmoCh02G004110 vs. TrEMBL
Match: A0A0A0LP62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G245500 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.6e-18
Identity = 54/92 (58.70%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 1  MKLSAAFF-LLFLILLANVSH--ARKEKGEYWKKVMKDEAIPEMLKELLFDDD---SLV- 60
          MKLS AFF LL L+LL +++H  +RKE+GEYWKK+MK+EA+PEMLKELL + D   S+V 
Sbjct: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60

Query: 61 --SSDAQSEHFMNNFDTHPNAIIYHSHGATHD 84
            ++  Q EHF+ NFD HPNAIIYH+H   H+
Sbjct: 61 YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHN 92

[Close]

BLAST of CmoCh02G004110 vs. TrEMBL
Match: A0A0B2RZA1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_020511 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.1e-13
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60
          MK   AFF++F +L+ N+S+ARK+ G+YWK +M  + +PE +K+LL  D  +  SDA  +
Sbjct: 18 MKSFFAFFVVFSLLVVNLSYARKDMGDYWKNMMNGQPMPEAIKDLLVQDPQV--SDAMKD 77

Query: 61 HFMNNFDTHPNAIIYHSHGATHDH 85
          HF+ +FD  PN I+YH+H   H H
Sbjct: 78 HFIRDFDIKPNVILYHTHVVPHKH 99

[Close]

BLAST of CmoCh02G004110 vs. TrEMBL
Match: I1LJF5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G119200 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.1e-13
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60
          MK   AFF++F +L+ N+S+ARK+ G+YWK +M  + +PE +K+LL  D  +  SDA  +
Sbjct: 18 MKSFFAFFVVFSLLVVNLSYARKDMGDYWKNMMNGQPMPEAIKDLLVQDPQV--SDAMKD 77

Query: 61 HFMNNFDTHPNAIIYHSHGATHDH 85
          HF+ +FD  PN I+YH+H   H H
Sbjct: 78 HFIRDFDIKPNVILYHTHVVPHKH 99

[Close]

BLAST of CmoCh02G004110 vs. TrEMBL
Match: C6T006_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.1e-13
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60
          MK   AFF++F +L+ N+S+ARK+ G+YWK +M  + +PE +K+LL  D  +  SDA  +
Sbjct: 10 MKSFFAFFVVFSLLVVNLSYARKDMGDYWKNMMNGQPMPEAIKDLLVQDPQV--SDAMKD 69

Query: 61 HFMNNFDTHPNAIIYHSHGATHDH 85
          HF+ +FD  PN I+YH+H   H H
Sbjct: 70 HFIRDFDIKPNVILYHTHVVPHKH 91

[Close]

BLAST of CmoCh02G004110 vs. TrEMBL
Match: W9R0Z1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026929 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1  MKLSAAFFLLFLILLA-NVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDD--SLVSSDA 60
          MK   AFF+LF ILL  N+S+ARK+ GEYW  +MKD+ IPE +++L +D D  S ++   
Sbjct: 1  MKSIFAFFVLFSILLVGNISYARKDAGEYWNSIMKDQPIPEAIRDLFYDQDLPSDLTGPT 60

Query: 61 QSEHFMNNFDTHPNAIIYHSHGATHDHPGHK 89
          + + F+ +FD  PN IIYHSH        HK
Sbjct: 61 KHDRFVRDFDVQPNVIIYHSHAQPQGEDNHK 91

[Close]

BLAST of CmoCh02G004110 vs. TAIR10
Match: AT1G49310.1 (AT1G49310.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-06
Identity = 30/84 (35.71%), Postives = 45/84 (53.57%), Query Frame = 1


Query: 1  MKLSAAFFLLFLILLANVSHARKEKG-------EYWKKVMKDEAIPEMLKELLFDDDSLV 60
          MK    + ++F++LL+ +      +G       EYWKK+MK+E +PE +KELL +     
Sbjct: 1  MKQQQRYLVVFIVLLSFLLFVNLSEGRTGGVAEEYWKKMMKNEPLPEPIKELLNN----- 60

Query: 61 SSDAQSEHFMNNFDTHPNAIIYHS 78
                E F+ NFDT    IIYH+
Sbjct: 61 PFRTAQERFIQNFDTKSVVIIYHN 79

[Close]

BLAST of CmoCh02G004110 vs. NCBI nr
Match: gi|659116146|ref|XP_008457928.1| (PREDICTED: organ-specific protein P4 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 9.5e-19
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = 1


Query: 1   MKLSAAFFLLFLILLAN---VSH--ARKEKGEYWKKVMKDEAIPEMLKELLFDDD--SLV 60
           MKLS AFF L  +LL     +SH  +RKE+GEYWKK+MK+EA+PEMLKELL +DD  S+V
Sbjct: 30  MKLSIAFFFLLSLLLLGDIAISHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDSSIV 89

Query: 61  --SSDAQSEHFMNNFDTHPNAIIYHSHGATHDHPGHKTKPS 93
             ++  Q EHF  NFD HPNAIIYH+H   H H  + T P+
Sbjct: 90  EYNNKQQKEHFTTNFDPHPNAIIYHAHAHAHAHNSNPTLPN 130

[Close]

BLAST of CmoCh02G004110 vs. NCBI nr
Match: gi|449462246|ref|XP_004148852.1| (PREDICTED: uncharacterized protein LOC101213460 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 54/92 (58.70%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 1  MKLSAAFF-LLFLILLANVSH--ARKEKGEYWKKVMKDEAIPEMLKELLFDDD---SLV- 60
          MKLS AFF LL L+LL +++H  +RKE+GEYWKK+MK+EA+PEMLKELL + D   S+V 
Sbjct: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60

Query: 61 --SSDAQSEHFMNNFDTHPNAIIYHSHGATHD 84
            ++  Q EHF+ NFD HPNAIIYH+H   H+
Sbjct: 61 YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHN 92

[Close]

BLAST of CmoCh02G004110 vs. NCBI nr
Match: gi|734418854|gb|KHN39771.1| (hypothetical protein glysoja_020511 [Glycine soja])

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60
          MK   AFF++F +L+ N+S+ARK+ G+YWK +M  + +PE +K+LL  D  +  SDA  +
Sbjct: 18 MKSFFAFFVVFSLLVVNLSYARKDMGDYWKNMMNGQPMPEAIKDLLVQDPQV--SDAMKD 77

Query: 61 HFMNNFDTHPNAIIYHSHGATHDH 85
          HF+ +FD  PN I+YH+H   H H
Sbjct: 78 HFIRDFDIKPNVILYHTHVVPHKH 99

[Close]

BLAST of CmoCh02G004110 vs. NCBI nr
Match: gi|351726010|ref|NP_001237112.1| (uncharacterized protein LOC100306585 precursor [Glycine max])

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 1  MKLSAAFFLLFLILLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSE 60
          MK   AFF++F +L+ N+S+ARK+ G+YWK +M  + +PE +K+LL  D  +  SDA  +
Sbjct: 10 MKSFFAFFVVFSLLVVNLSYARKDMGDYWKNMMNGQPMPEAIKDLLVQDPQV--SDAMKD 69

Query: 61 HFMNNFDTHPNAIIYHSHGATHDH 85
          HF+ +FD  PN I+YH+H   H H
Sbjct: 70 HFIRDFDIKPNVILYHTHVVPHKH 91

[Close]

BLAST of CmoCh02G004110 vs. NCBI nr
Match: gi|703097742|ref|XP_010096195.1| (hypothetical protein L484_026929 [Morus notabilis])

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-12
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1  MKLSAAFFLLFLILLA-NVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDD--SLVSSDA 60
          MK   AFF+LF ILL  N+S+ARK+ GEYW  +MKD+ IPE +++L +D D  S ++   
Sbjct: 1  MKSIFAFFVLFSILLVGNISYARKDAGEYWNSIMKDQPIPEAIRDLFYDQDLPSDLTGPT 60

Query: 61 QSEHFMNNFDTHPNAIIYHSHGATHDHPGHK 89
          + + F+ +FD  PN IIYHSH        HK
Sbjct: 61 KHDRFVRDFDVQPNVIIYHSHAQPQGEDNHK 91

The following BLAST results are available for this feature:

BLAST of CmoCh02G004110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G004110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP62_CUCSA	9.6e-18	58.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G245500 PE=4 SV=1	[more]
A0A0B2RZA1_GLYSO	7.1e-13	45.24	Uncharacterized protein OS=Glycine soja GN=glysoja_020511 PE=4 SV=1	[more]
I1LJF5_SOYBN	7.1e-13	45.24	Uncharacterized protein OS=Glycine max GN=GLYMA_11G119200 PE=4 SV=1	[more]
C6T006_SOYBN	7.1e-13	45.24	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
W9R0Z1_9ROSA	1.2e-12	46.15	Uncharacterized protein OS=Morus notabilis GN=L484_026929 PE=4 SV=1	[more]

BLAST of CmoCh02G004110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49310.1	3.4e-06	35.71	unknown protein	[more]

BLAST of CmoCh02G004110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116146\|ref\|XP_008457928.1\|	9.5e-19	56.44	PREDICTED: organ-specific protein P4 [Cucumis melo]	[more]
gi\|449462246\|ref\|XP_004148852.1\|	1.4e-17	58.70	PREDICTED: uncharacterized protein LOC101213460 [Cucumis sativus]	[more]
gi\|734418854\|gb\|KHN39771.1\|	1.0e-12	45.24	hypothetical protein glysoja_020511 [Glycine soja]	[more]
gi\|351726010\|ref\|NP_001237112.1\|	1.0e-12	45.24	uncharacterized protein LOC100306585 precursor [Glycine max]	[more]
gi\|703097742\|ref\|XP_010096195.1\|	1.7e-12	46.15	hypothetical protein L484_026929 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024489	Organ_specific_prot

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G004110.1	CmoCh02G004110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024489	Organ specific protein	PFAM	PF10950	DUF2775	coord: 23..77 score: 1.
None	No IPR available	PANTHER	PTHR33731	FAMILY NOT NAMED	coord: 1..78 score: 2.3
None	No IPR available	PANTHER	PTHR33731:SF3	SUBFAMILY NOT NAMED	coord: 1..78 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G004110	Cucsa.109690	Cucumber (Gy14) v1	cgycmoB0253
CmoCh02G004110	CmaCh02G004070	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G004110	CmaCh20G008560	Cucurbita maxima (Rimu)	cmacmoB554
CmoCh02G004110	Csa2G245500	Cucumber (Chinese Long) v2	cmocuB577
CmoCh02G004110	ClCG11G004490	Watermelon (Charleston Gray)	cmowcgB515
CmoCh02G004110	CSPI02G12120	Wild cucumber (PI 183967)	cmocpiB582
CmoCh02G004110	Lsi10G003560	Bottle gourd (USVL1VR-Ls)	cmolsiB533
CmoCh02G004110	Cp4.1LG05g12690	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G004110	Cp4.1LG16g02360	Cucurbita pepo (Zucchini)	cmocpeB575
CmoCh02G004110	MELO3C020982.2	Melon (DHL92) v3.6.1	cmomedB623
CmoCh02G004110	CsaV3_2G014630	Cucumber (Chinese Long) v3	cmocucB0687
CmoCh02G004110	Cla97C11G211230	Watermelon (97103) v2	cmowmbB587
CmoCh02G004110	Bhi10G001629	Wax gourd	cmowgoB0736
CmoCh02G004110	CsGy2G012110	Cucumber (Gy14) v2	cgybcmoB220
CmoCh02G004110	Carg22951	Silver-seed gourd	carcmoB1204
CmoCh02G004110	Carg23642	Silver-seed gourd	carcmoB1074

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G004110	CmoCh20G008670	Cucurbita moschata (Rifu)	cmocmoB404

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G004110	Cucurbita moschata (Rifu)	cmocmoB120
CmoCh02G004110	Cucurbita moschata (Rifu)	cmocmoB388
CmoCh02G004110	Cucumber (Gy14) v1	cgycmoB0679
CmoCh02G004110	Cucurbita maxima (Rimu)	cmacmoB153
CmoCh02G004110	Cucurbita maxima (Rimu)	cmacmoB528
CmoCh02G004110	Wild cucumber (PI 183967)	cmocpiB646
CmoCh02G004110	Cucumber (Chinese Long) v2	cmocuB634
CmoCh02G004110	Melon (DHL92) v3.5.1	cmomeB546
CmoCh02G004110	Melon (DHL92) v3.5.1	cmomeB552
CmoCh02G004110	Watermelon (Charleston Gray)	cmowcgB530
CmoCh02G004110	Watermelon (97103) v1	cmowmB580
CmoCh02G004110	Watermelon (97103) v1	cmowmB603
CmoCh02G004110	Cucurbita pepo (Zucchini)	cmocpeB566
CmoCh02G004110	Cucurbita pepo (Zucchini)	cmocpeB591
CmoCh02G004110	Bottle gourd (USVL1VR-Ls)	cmolsiB545
CmoCh02G004110	Cucumber (Gy14) v2	cgybcmoB946
CmoCh02G004110	Melon (DHL92) v3.6.1	cmomedB631
CmoCh02G004110	Cucumber (Chinese Long) v3	cmocucB0758
CmoCh02G004110	Watermelon (97103) v2	cmowmbB592
CmoCh02G004110	Wax gourd	cmowgoB0731