Carg22951 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22951
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	organ-specific protein P4-like
Location	Cucurbita_argyrosperma_scaffold_319 : 71299 .. 72159 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGGTTACTGATCGCTTCTTCTAAAGTACGCCCTGTTTGTTTCACTTACAACAATTAGTTCTCCCGATCAAAAAAACATTAGACATTCCATTTTATGAAACCAGCACTCTTGACGTTAGTTGACATACAAGAATTTGTATATGTCGATATCGATCTCCACCCCTTAACCTTTTTTATCTTATTAACTAAAGAAATAAGACTTTGAACGGTAGTTAGTTCAACACCGATAATAAATTTTTAAAGAATTCCGAGGCACCCATCCCAAGGTACAATTCCCAAAATCCCTAGAATATATATATTTATTTATTTAATTTCATAATTATTTTTAATTAGAAACAAAAAAAATTGAATAAATAATTTAGAACCACGGGAATTAACATAATCTATTTAATAAAAATTGTTTGAGTTGAAAAATTTACCACTTAAATAATTTAGGTTGAGTCTAAATAACGTCACAACCTGACCCAACTCGACCGGGCCAAATCCAGCTTGGACAAATGAGTTGAATCTAAAAAAAATATTCCAACCCGACCAAATTCAATCCACGAACGCTCGTATCAACTCGATGCTTTTTTTTTTTTTTTTTTTTTGGTACTGATTTTGGGCATCACAGCTAGCAAATGTAAGCCATGCAAGGAAGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATCCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGCGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCGTGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGA

mRNA sequence

ATGGCTCGGTTACTGATCGCTTCTTCTAAACTAGCAAATGTAAGCCATGCAAGGAAGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATCCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGCGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCGTGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGA

Coding sequence (CDS)

ATGGCTCGGTTACTGATCGCTTCTTCTAAACTAGCAAATGTAAGCCATGCAAGGAAGGAGAAAGGGGAGTACTGGAAAAAGGTAATGAAAGATGAAGCAATCCCAGAGATGCTGAAAGAGCTGTTGTTTGATGATGATTCATTGGCGAGCAGCGACGCCCAAAGCGAGCACTTCATGAACAACTTTGATACCCATCCAAATGCTATCATATATCACTCTCATGGCGCCACTCGTGACCATCCTGGCCACAAAACCAAGCCCTCAGCCCCATGA

Protein sequence

MARLLIASSKLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMNNFDTHPNAIIYHSHGATRDHPGHKTKPSAP

Homology

[Close]

BLAST of Carg22951 vs. NCBI nr
Match: XP_022947675.1 (organ-specific protein P4-like [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 5.0e-37
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 11 LANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMNNFDTHPNAII 70
          LANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSL SSDAQSEHFMNNFDTHPNAII
Sbjct: 15 LANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSEHFMNNFDTHPNAII 74

Query: 71 YHSHGATRDHPGHKTKPSAP 91
          YHSHGAT DHPGHKTKPSAP
Sbjct: 75 YHSHGATHDHPGHKTKPSAP 94

[Close]

BLAST of Carg22951 vs. NCBI nr
Match: XP_023534667.1 (organ-specific protein P4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-36
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 2  ARLLIASSKLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMNN 61
          A  L++   LA+VSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSL SSDAQSEHFMNN
Sbjct: 6  AFFLLSLLLLASVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSEHFMNN 65

Query: 62 FDTHPNAIIYHSHGATRDHPGHKTKPSAP 91
          FDTHPNAIIYHSHGAT DHPGHKTKPSAP
Sbjct: 66 FDTHPNAIIYHSHGATHDHPGHKTKPSAP 94

[Close]

BLAST of Carg22951 vs. NCBI nr
Match: XP_023006974.1 (organ-specific protein P4-like [Cucurbita maxima])

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-34
Identity = 77/89 (86.52%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 2  ARLLIASSKLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMNN 61
          A  L++   LANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSL SSDAQSE FMNN
Sbjct: 6  AFFLLSLLLLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQSERFMNN 65

Query: 62 FDTHPNAIIYHSHGATRDHPGHKTKPSAP 91
          FDTHPNAIIYHSHGAT DHPGHKTK +AP
Sbjct: 66 FDTHPNAIIYHSHGATHDHPGHKTKLTAP 94

[Close]

BLAST of Carg22951 vs. NCBI nr
Match: XP_022148637.1 (organ-specific protein P4 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 3.5e-14
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 4  LLIASSKLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMNNFD 63
          LL++    A   + RK++GEYWKK+MK+E IPE+LKELL+DD    S   Q+E FM+NFD
Sbjct: 9  LLLSLLLFAEGGYGRKDQGEYWKKIMKEEEIPEVLKELLYDD----SVGGQNERFMSNFD 68

Query: 64 THPNAIIYHSH----GATRDHPGHKTKPSA 90
           HPNAIIYHSH     A  +H   K K +A
Sbjct: 69 PHPNAIIYHSHSHGAAAGHEHSDEKIKAAA 94

[Close]

BLAST of Carg22951 vs. NCBI nr
Match: XP_022944721.1 (organ-specific protein P4-like [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 5.0e-13
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 4  LLIASSKLANVSH-ARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMNNF 63
          LLI+     +VSH +RK++G+YWKK+MK+E IPEMLKELLFDD  +   + Q + FMNNF
Sbjct: 9  LLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMV---ENQKQRFMNNF 68

Query: 64 DTHPNAIIYH 73
          D HPNAIIYH
Sbjct: 69 DPHPNAIIYH 75

[Close]

BLAST of Carg22951 vs. TAIR10
Match: AT1G49310.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-05
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 23 EYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMNNFDTHPNAIIYHS 74
          EYWKK+MK+E +PE +KELL +    A      E F+ NFDT    IIYH+
Sbjct: 34 EYWKKMMKNEPLPEPIKELLNNPFRTA-----QERFIQNFDTKSVVIIYHN 79

[Close]

BLAST of Carg22951 vs. TrEMBL
Match: tr|A0A0A0LP62|A0A0A0LP62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245500 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 5  LIASSKLANVSH--ARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLAS------SDAQSE 64
          L++   L +++H  +RKE+GEYWKK+MK+EA+PEMLKELL + D  +S      +  Q E
Sbjct: 10 LLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVEYNNNKQQKE 69

Query: 65 HFMNNFDTHPNAIIYHS 74
          HF+ NFD HPNAIIYH+
Sbjct: 70 HFLTNFDPHPNAIIYHA 86

[Close]

BLAST of Carg22951 vs. TrEMBL
Match: tr|A0A2I4FZ60|A0A2I4FZ60_9ROSI (organ-specific protein P4-like OS=Juglans regia OX=51240 GN=LOC109003300 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 11 LANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMNNFDTHPNAII 70
          L N+S AR++ G+YWK +MKD+ IPE +K LL  D   AS   +++HF+ +FD  PNAII
Sbjct: 18 LVNLSDARRDPGDYWKSIMKDQPIPEAIKGLLHRDLPYASDARENDHFLKDFDVTPNAII 77

Query: 71 YHSHGATRD 80
          YH+H   +D
Sbjct: 78 YHAHVEDKD 86

[Close]

BLAST of Carg22951 vs. TrEMBL
Match: tr|A0A2N9IKT7|A0A2N9IKT7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52453 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.4e-10
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 13 NVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMNNFDTHPNAIIYH 72
          N + ARK+ G+YWK +MKD+ IPE +K+L+  D    S   + +HF+ +FD  PNAIIYH
Sbjct: 18 NPNDARKDTGDYWKSIMKDQPIPEAIKDLIHQDPPYLSDATKKDHFVKDFDVKPNAIIYH 77

Query: 73 SHGATRDHPGHKTKPSAP 91
           H A ++   H  K S P
Sbjct: 78 PHVAPKEEKPH-VKDSEP 94

[Close]

BLAST of Carg22951 vs. TrEMBL
Match: tr|W9R0Z1|W9R0Z1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026929 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.6e-10
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 11 LANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEH--FMNNFDTHPNA 70
          + N+S+ARK+ GEYW  +MKD+ IPE +++L +D D  +     ++H  F+ +FD  PN 
Sbjct: 16 VGNISYARKDAGEYWNSIMKDQPIPEAIRDLFYDQDLPSDLTGPTKHDRFVRDFDVQPNV 75

Query: 71 IIYHSHGATRDHPGHK 85
          IIYHSH   +    HK
Sbjct: 76 IIYHSHAQPQGEDNHK 91

[Close]

BLAST of Carg22951 vs. TrEMBL
Match: tr|I1JJK0|I1JJK0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G300900 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-09
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 1  MARLLIASSKLANVSHARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLASSDAQSEHFMN 60
          ++ LL+A+    N+SHARK+ G+YWKK+M DE +PE +K+L+ D       DA ++HF+ 
Sbjct: 11 LSLLLVAN---INLSHARKDLGDYWKKMMNDEPMPEAIKDLIQDQQ---VQDATADHFIR 70

Query: 61 NFDTHPNAIIYHSHGATRDHP-----GHKTKP 88
           FD  PN I+YH+H  ++         HK KP
Sbjct: 71 YFDMKPNIILYHTHVVSKKQQQQKAFDHKFKP 96

The following BLAST results are available for this feature:

BLAST of Carg22951 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947675.1	5.0e-37	97.50	organ-specific protein P4-like [Cucurbita moschata]	[more]
XP_023534667.1	1.4e-36	88.76	organ-specific protein P4-like [Cucurbita pepo subsp. pepo]	[more]
XP_023006974.1	1.0e-34	86.52	organ-specific protein P4-like [Cucurbita maxima]	[more]
XP_022148637.1	3.5e-14	52.22	organ-specific protein P4 [Momordica charantia]	[more]
XP_022944721.1	5.0e-13	61.43	organ-specific protein P4-like [Cucurbita moschata]	[more]

BLAST of Carg22951 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49310.1	1.2e-05	49.02	unknown protein	[more]

BLAST of Carg22951 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22951 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LP62\|A0A0A0LP62_CUCSA	2.1e-12	53.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245500 PE=4 SV=1	[more]
tr\|A0A2I4FZ60\|A0A2I4FZ60_9ROSI	1.2e-10	49.28	organ-specific protein P4-like OS=Juglans regia OX=51240 GN=LOC109003300 PE=4 SV...	[more]
tr\|A0A2N9IKT7\|A0A2N9IKT7_FAGSY	3.4e-10	44.87	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52453 PE=4 SV=1	[more]
tr\|W9R0Z1\|W9R0Z1_9ROSA	7.6e-10	42.11	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026929 PE=4 SV=1	[more]
tr\|I1JJK0\|I1JJK0_SOYBN	4.9e-09	41.30	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G300900 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024489	Organ_specific_prot

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22951-RA	Carg22951-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024489	Organ specific protein	PFAM	PF10950	Organ_specific	coord: 19..73 e-value: 1.2E-7 score: 32.4
None	No IPR available	PANTHER	PTHR33731	FAMILY NOT NAMED	coord: 11..80
None	No IPR available	PANTHER	PTHR33731:SF8	SUBFAMILY NOT NAMED	coord: 11..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22951	Csa2G245500	Cucumber (Chinese Long) v2	carcuB0906
Carg22951	MELO3C020982	Melon (DHL92) v3.5.1	carmeB0879
Carg22951	ClCG11G004490	Watermelon (Charleston Gray)	carwcgB0866
Carg22951	CSPI02G12120	Wild cucumber (PI 183967)	carcpiB0926
Carg22951	Cucsa.109690	Cucumber (Gy14) v1	carcgyB1012
Carg22951	CmaCh02G004070	Cucurbita maxima (Rimu)	carcmaB1233
Carg22951	CmaCh20G008560	Cucurbita maxima (Rimu)	carcmaB1232
Carg22951	CmoCh20G008670	Cucurbita moschata (Rifu)	carcmoB1203
Carg22951	CmoCh02G004110	Cucurbita moschata (Rifu)	carcmoB1204
Carg22951	Lsi10G003560	Bottle gourd (USVL1VR-Ls)	carlsiB808
Carg22951	Cp4.1LG05g12690	Cucurbita pepo (Zucchini)	carcpeB1243
Carg22951	Cp4.1LG16g02360	Cucurbita pepo (Zucchini)	carcpeB1242
Carg22951	CsGy2G012110	Cucumber (Gy14) v2	carcgybB0879
Carg22951	MELO3C020982.2	Melon (DHL92) v3.6.1	carmedB0887
Carg22951	CsaV3_2G014630	Cucumber (Chinese Long) v3	carcucB0929
Carg22951	Cla97C11G211230	Watermelon (97103) v2	carwmbB0929
Carg22951	Bhi10G001629	Wax gourd	carwgoB1037

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22951	Carg23642	Silver-seed gourd	carcarB619

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22951	Cucumber (Gy14) v2	carcgybB0880
Carg22951	Cucumber (Gy14) v1	carcgyB1013
Carg22951	Cucurbita moschata (Rifu)	carcmoB1202
Carg22951	Cucurbita pepo (Zucchini)	carcpeB1241
Carg22951	Wild cucumber (PI 183967)	carcpiB0928
Carg22951	Cucumber (Chinese Long) v2	carcuB0908
Carg22951	Cucumber (Chinese Long) v3	carcucB0931
Carg22951	Bottle gourd (USVL1VR-Ls)	carlsiB809
Carg22951	Melon (DHL92) v3.5.1	carmeB0880
Carg22951	Melon (DHL92) v3.6.1	carmedB0888
Carg22951	Watermelon (Charleston Gray)	carwcgB0868
Carg22951	Watermelon (97103) v1	carwmB0895
Carg22951	Watermelon (97103) v1	carwmB0896
Carg22951	Watermelon (97103) v2	carwmbB0930
Carg22951	Wax gourd	carwgoB1036