Cucsa.109690 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.109690
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionOrgan specific protein
Locationscaffold00934 : 613189 .. 614491 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATTATATATTAATTGCTTTGGCTTCTTCTCTCTTTAGCTGTGTTGTGAGAGAAACCATAGATATGAAGCTTTCTATTGCTTTCTTCTTTCTTCTTTCTCTTCTCTTGGTAAGCTCTAATTCTTCTTCCTTTTTCCTTAATTAATCTCCTTTCAGATATATATTTATTATATGCTTTTGTTCTAATTTGTTATTTTATTTTTTAATTAAGGATAATTGAAATTGAGTTAGATTTGTGAATATTCATAGCATGATTATCATAAAACCACTGGATCATAATATATATTCTTATGATATAGTTTGGGTTTAGTTTAGTTTTATTGTGTTAATACCTTAAGGCATATATATGTTTCTGTCCCTCTCATCTCACCTATAGTCTTTTTTTTCTTACAAAACAGAAAAAGAAATTTCCTAATTTTCTCTGATATATAATTTGTCTAAAACAGAGTTATGAAGTTCTTTTGTTTTTTTTTTTTTTCCCTTTTTTTAAGCAAATAGAATTTTGTATTCTTCAATGGAGGAATTTGTCATTAAACAGGCTAGTTTTTAAAAACAAATTTGGGTGTTAGTTTTTTCTTTTCTTTTATTGATGATTTTCTTAGAAATCTAAAAGTAAAGAAATTTGTTTAATACCTTATTTTATATATAAATGAGAAGTTAAATACTTTTTACGATTTCAAAACTTGATTTAGTTTTTTTAAAACGTTTTTACAACGAAAGAACAAAAAAAAAAAATGGAGGGAGTAATTTTATAAGCTTAAATTATAAAAACTAAATAGTCTAAACAATAATCCTCACATGCAACTGATTTTTAAAGTCACTAAATAGTAATCAAACGGATCGGCAAAGACAACAGAATTTGATGGAGTTGCTTACATGTTTTTGAATGATGGGGTTTAATTACAGCTTGGAGATCTAACCCATGGCAGAAGCAGGAAAGAAGAAGGAGAATATTGGAAAAAGATAATGAAAGAAGAAGCACTTCCTGAAATGCTTAAAGAGCTATTAATAGAAGCTGATGATCCTTCTTCAATGGTGGAGTACAATAATAATAAGCAACAAAAAGAGCATTTTTTGACCAACTTTGATCCTCATCCAAATGCTATAATTTATCATGCCCATGCCCATGCCCATAACAGTAACCCCACTGCACTTCCAAATTTATCCCCATGAATTCTTCTTATTTCCCAAATATATCCCTTTAAAAACCACAAGAATGTTTTCTCATTTGAATTATTTATCAAACCATATATAATTATTATGTGTAAATTAATATATTTAGTGTGTGGTTTTCTAATTTT

mRNA sequence

AAAAATTATATATTAATTGCTTTGGCTTCTTCTCTCTTTAGCTGTGTTGTGAGAGAAACCATAGATATGAAGCTTTCTATTGCTTTCTTCTTTCTTCTTTCTCTTCTCTTGCTTGGAGATCTAACCCATGGCAGAAGCAGGAAAGAAGAAGGAGAATATTGGAAAAAGATAATGAAAGAAGAAGCACTTCCTGAAATGCTTAAAGAGCTATTAATAGAAGCTGATGATCCTTCTTCAATGGTGGAGTACAATAATAATAAGCAACAAAAAGAGCATTTTTTGACCAACTTTGATCCTCATCCAAATGCTATAATTTATCATGCCCATGCCCATGCCCATAACAGTAACCCCACTGCACTTCCAAATTTATCCCCATGAATTCTTCTTATTTCCCAAATATATCCCTTTAAAAACCACAAGAATGTTTTCTCATTTGAATTATTTATCAAACCATATATAATTATTATGTGTAAATTAATATATTTAGTGTGTGGTTTTCTAATTTT

Coding sequence (CDS)

ATGAAGCTTTCTATTGCTTTCTTCTTTCTTCTTTCTCTTCTCTTGCTTGGAGATCTAACCCATGGCAGAAGCAGGAAAGAAGAAGGAGAATATTGGAAAAAGATAATGAAAGAAGAAGCACTTCCTGAAATGCTTAAAGAGCTATTAATAGAAGCTGATGATCCTTCTTCAATGGTGGAGTACAATAATAATAAGCAACAAAAAGAGCATTTTTTGACCAACTTTGATCCTCATCCAAATGCTATAATTTATCATGCCCATGCCCATGCCCATAACAGTAACCCCACTGCACTTCCAAATTTATCCCCATGA

Protein sequence

MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVEYNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSNPTALPNLSP*
Homology
[Close]
BLAST of Cucsa.109690 vs. Swiss-Prot
Match: OSP4_PEA (Organ-specific protein P4 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.0e-06
Identity = 30/91 (32.97%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 8  FFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVEYNNNKQQ 67
          F LL L L   + +  SRK+ GEYWK +MK++ +PE ++ LL    D S++     + ++
Sbjct: 8  FALLPLFLFLIVANVESRKDVGEYWKLVMKDQDMPEEIQGLL----DASNIKNSKTHAKE 67

Query: 68 KEHFLTNFDPHPNAIIYHAHAHAHNSNPTAL 99
           +  +  F+P PNA  Y  +    N N  A+
Sbjct: 68 NKGAIGEFEPCPNASAYGDNEIHANENKGAI 94

[Close]
BLAST of Cucsa.109690 vs. TrEMBL
Match: A0A0A0LP62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G245500 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.6e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
           MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE
Sbjct: 1   MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60

Query: 61  YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSNPTALPNLSP 104
           YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSNPTALPNLSP
Sbjct: 61  YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSNPTALPNLSP 103

[Close]
BLAST of Cucsa.109690 vs. TrEMBL
Match: W9R0Z1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026929 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-11
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          MK   AFF L S+LL+G++++  +RK+ GEYW  IMK++ +PE +++L  + D PS +  
Sbjct: 1  MKSIFAFFVLFSILLVGNISY--ARKDAGEYWNSIMKDQPIPEAIRDLFYDQDLPSDL-- 60

Query: 61 YNNNKQQKEHFLTNFDPHPNAIIYHAHA 89
                + + F+ +FD  PN IIYH+HA
Sbjct: 61 --TGPTKHDRFVRDFDVQPNVIIYHSHA 82

[Close]
BLAST of Cucsa.109690 vs. TrEMBL
Match: V7AE51_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G046400g PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 1 

Query: 1   MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
           MK   AFF + SLLL+ +L++  +RK+ G+YWK +M  + +PE +K+LL++    S  V 
Sbjct: 33  MKSYFAFFLIFSLLLVVNLSY--ARKDMGDYWKNMMNGQPMPEAIKDLLVQDPQVSDTV- 92

Query: 61  YNNNKQQKEHFLTNFDPHPNAIIYHAH 88
                  K+HF+ +FD  PN I+YH H
Sbjct: 93  -------KDHFIRDFDIRPNVILYHTH 109

[Close]
BLAST of Cucsa.109690 vs. TrEMBL
Match: I3SZE6_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.3e-09
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          MK   A F ++SLL+  +     +RK+ G+YWK +M  + +PE +K+LL+E  DP     
Sbjct: 1  MKSIFAVFLVISLLMATNTNFSYARKDLGDYWKDMMNGQPMPEAIKDLLVE--DPQV--- 60

Query: 61 YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSN 95
            ++   K+HF  +FD  PN I+YH H  +   N
Sbjct: 61 --SDAAGKDHFTRDFDIRPNVILYHTHVESKKQN 87

[Close]
BLAST of Cucsa.109690 vs. TrEMBL
Match: A0A059ANJ0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01259 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.3e-09
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 1 

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          MK   AF FLLS+LL  ++    +RK  G+YWKKIMK++ +PE +++L+           
Sbjct: 1  MKPIFAFIFLLSILLFAEVND--ARKSPGDYWKKIMKDQPMPESIRDLI----------- 60

Query: 61 YNNNKQQKEHFLTNFDPHPNAIIYHAHAHA 91
             N++    F+ +FD  PN IIYH+H  A
Sbjct: 61 RPGNEKNTNDFMRDFDMRPNVIIYHSHGDA 77

[Close]
BLAST of Cucsa.109690 vs. TAIR10
Match: AT1G49310.1 (AT1G49310.1 unknown protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-09
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 1 

Query: 5  IAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVEYNNN 64
          + F  LLS LL  +L+ GR+     EYWKK+MK E LPE +KELL            N  
Sbjct: 9  VVFIVLLSFLLFVNLSEGRTGGVAEEYWKKMMKNEPLPEPIKELL-----------NNPF 68

Query: 65 KQQKEHFLTNFDPHPNAIIYH 86
          +  +E F+ NFD     IIYH
Sbjct: 69 RTAQERFIQNFDTKSVVIIYH 78

[Close]
BLAST of Cucsa.109690 vs. NCBI nr
Match: gi|449462246|ref|XP_004148852.1| (PREDICTED: uncharacterized protein LOC101213460 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 6.5e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
           MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE
Sbjct: 1   MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60

Query: 61  YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSNPTALPNLSP 104
           YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSNPTALPNLSP
Sbjct: 61  YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSNPTALPNLSP 103

[Close]
BLAST of Cucsa.109690 vs. NCBI nr
Match: gi|659116146|ref|XP_008457928.1| (PREDICTED: organ-specific protein P4 [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 3.4e-41
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 1   MKLSIAFFFLLSLLLLGDL--THGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSM 60
           MKLSIAFFFLLSLLLLGD+  +HGRSRKEEGEYWKKIMKEEALPEMLKELL+E DD SS+
Sbjct: 30  MKLSIAFFFLLSLLLLGDIAISHGRSRKEEGEYWKKIMKEEALPEMLKELLLE-DDDSSI 89

Query: 61  VEYNNNKQQKEHFLTNFDPHPNAIIY--HAHAHAHNSNPTALPNLSP 104
           VEY NNKQQKEHF TNFDPHPNAIIY  HAHAHAHNSNPT LPNLSP
Sbjct: 90  VEY-NNKQQKEHFTTNFDPHPNAIIYHAHAHAHAHNSNPT-LPNLSP 133

[Close]
BLAST of Cucsa.109690 vs. NCBI nr
Match: gi|703097742|ref|XP_010096195.1| (hypothetical protein L484_026929 [Morus notabilis])

HSP 1 Score: 76.3 bits (186), Expect = 3.6e-11
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          MK   AFF L S+LL+G++++  +RK+ GEYW  IMK++ +PE +++L  + D PS +  
Sbjct: 1  MKSIFAFFVLFSILLVGNISY--ARKDAGEYWNSIMKDQPIPEAIRDLFYDQDLPSDL-- 60

Query: 61 YNNNKQQKEHFLTNFDPHPNAIIYHAHA 89
                + + F+ +FD  PN IIYH+HA
Sbjct: 61 --TGPTKHDRFVRDFDVQPNVIIYHSHA 82

[Close]
BLAST of Cucsa.109690 vs. NCBI nr
Match: gi|1021499744|ref|XP_016193150.1| (PREDICTED: uncharacterized protein LOC107634084 [Arachis ipaensis])

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-11
Identity = 37/94 (39.36%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60
          MK   AFF + SLLL  +L++GR ++  GEYWKK++K +++PE +KE+L+  +DP   + 
Sbjct: 1  MKPFFAFFIVFSLLLGANLSYGR-KELVGEYWKKMIKGQSMPEAIKEILV-VEDP--QIS 60

Query: 61 YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSN 95
           +++ + K++F+ +FD  PN I+YH+H      N
Sbjct: 61 SSDSSRTKDNFIRDFDIKPNVILYHSHKQKQKHN 90

[Close]
BLAST of Cucsa.109690 vs. NCBI nr
Match: gi|657990327|ref|XP_008387387.1| (PREDICTED: organ-specific protein P4-like [Malus domestica])

HSP 1 Score: 71.6 bits (174), Expect = 8.9e-10
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 1 

Query: 1  MKLSIAFFFLL--SLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSM 60
          MK SI+ F L+  S+LL+   ++  +RK+ G+YWK +M ++ +PE +K+L +  D     
Sbjct: 1  MKFSISCFLLILSSILLMSQNSY--ARKDSGDYWKSVMNDQPMPEAIKDLFVHQDH---- 60

Query: 61 VEYNNNKQQKEHFLTNFDPHPNAIIYH-AHAH 90
           E+    ++K HF+ +FD  PNAIIYH AH H
Sbjct: 61 -EHQEPSKEKSHFVGDFDMRPNAIIYHGAHHH 85

The following BLAST results are available for this feature:
BLAST of Cucsa.109690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
OSP4_PEA6.0e-0632.97Organ-specific protein P4 OS=Pisum sativum PE=2 SV=1[more]
BLAST of Cucsa.109690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP62_CUCSA4.6e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G245500 PE=4 SV=1[more]
W9R0Z1_9ROSA2.5e-1140.91Uncharacterized protein OS=Morus notabilis GN=L484_026929 PE=4 SV=1[more]
V7AE51_PHAVU1.1e-0940.23Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G046400g PE=4 SV=1[more]
I3SZE6_LOTJA5.3e-0936.17Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A059ANJ0_EUCGR5.3e-0938.89Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01259 PE=4 SV=1[more]
BLAST of Cucsa.109690 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49310.12.1e-0941.98 unknown protein[more]
BLAST of Cucsa.109690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462246|ref|XP_004148852.1|6.5e-53100.00PREDICTED: uncharacterized protein LOC101213460 [Cucumis sativus][more]
gi|659116146|ref|XP_008457928.1|3.4e-4187.85PREDICTED: organ-specific protein P4 [Cucumis melo][more]
gi|703097742|ref|XP_010096195.1|3.6e-1140.91hypothetical protein L484_026929 [Morus notabilis][more]
gi|1021499744|ref|XP_016193150.1|6.2e-1139.36PREDICTED: uncharacterized protein LOC107634084 [Arachis ipaensis][more]
gi|657990327|ref|XP_008387387.1|8.9e-1040.22PREDICTED: organ-specific protein P4-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024489Organ_specific_prot
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.109690.1Cucsa.109690.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024489Organ specific proteinPFAMPF10950DUF2775coord: 26..88
score: 3.9
NoneNo IPR availablePANTHERPTHR33731FAMILY NOT NAMEDcoord: 1..87
score: 5.8
NoneNo IPR availablePANTHERPTHR33731:SF3SUBFAMILY NOT NAMEDcoord: 1..87
score: 5.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.109690Csa2G245500Cucumber (Chinese Long) v2cgycuB133
Cucsa.109690MELO3C020982Melon (DHL92) v3.5.1cgymeB149
Cucsa.109690ClCG11G004490Watermelon (Charleston Gray)cgywcgB155
Cucsa.109690CSPI02G12120Wild cucumber (PI 183967)cgycpiB134
Cucsa.109690CmaCh20G008560Cucurbita maxima (Rimu)cgycmaB0253
Cucsa.109690CmoCh02G004110Cucurbita moschata (Rifu)cgycmoB0253
Cucsa.109690CmoCh20G008670Cucurbita moschata (Rifu)cgycmoB0252
Cucsa.109690Lsi10G003560Bottle gourd (USVL1VR-Ls)cgylsiB145
Cucsa.109690MELO3C020982.2Melon (DHL92) v3.6.1cgymedB149
Cucsa.109690CsaV3_2G014630Cucumber (Chinese Long) v3cgycucB138
Cucsa.109690Cla97C11G211230Watermelon (97103) v2cgywmbB150
Cucsa.109690Bhi10G001629Wax gourdcgywgoB173
Cucsa.109690Carg23642Silver-seed gourdcarcgyB0907
Cucsa.109690Carg22951Silver-seed gourdcarcgyB1012
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.109690Wax gourdcgywgoB172
Cucsa.109690Cucumber (Gy14) v1cgycgyB057
Cucsa.109690Cucurbita maxima (Rimu)cgycmaB0252
Cucsa.109690Cucurbita maxima (Rimu)cgycmaB0254
Cucsa.109690Cucurbita moschata (Rifu)cgycmoB0251
Cucsa.109690Wild cucumber (PI 183967)cgycpiB135
Cucsa.109690Cucumber (Chinese Long) v2cgycuB135
Cucsa.109690Melon (DHL92) v3.5.1cgymeB150
Cucsa.109690Melon (DHL92) v3.5.1cgymeB151
Cucsa.109690Watermelon (Charleston Gray)cgywcgB156
Cucsa.109690Watermelon (97103) v1cgywmB155
Cucsa.109690Watermelon (97103) v1cgywmB156
Cucsa.109690Cucurbita pepo (Zucchini)cgycpeB0245
Cucsa.109690Cucurbita pepo (Zucchini)cgycpeB0246
Cucsa.109690Cucurbita pepo (Zucchini)cgycpeB0247
Cucsa.109690Bottle gourd (USVL1VR-Ls)cgylsiB146
Cucsa.109690Melon (DHL92) v3.6.1cgymedB150
Cucsa.109690Cucumber (Chinese Long) v3cgycucB142
Cucsa.109690Watermelon (97103) v2cgywmbB151