CmoCh20G005980 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G005980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium-binding EF-hand protein
LocationCmo_Chr20 : 2948665 .. 2949030 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGAAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTTTCCACGATCTGCTGCCGGTAATGGCGGAGAAATTGGGAGGAGAAGGGCTGATAAACGAGCTCTGTAATGGGTTTCAGATGCTGATGGACAAGGAGAAGGGCGTGATCACTTTAGAGAGCCTTAGGAGAAACTCTTCCCTTTTGGGTTTGTGGGATATGGGAGAAGAGGAGCTTGTGAGCATGATGAGGGAAGGGGACTTGGATGGCGATGGCGCTTTGAATCAAATGGAGTTTTGCGTTTTGATGTTCAGATTAAGCCCTGAATTGATGGAAGAGTCTCTGTATTGGCTTGATGACGCTTTGGAAAAGGAGTTTAAAGCATCTTGA

mRNA sequence

ATGGCGAGAAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTTTCCACGATCTGCTGCCGGTAATGGCGGAGAAATTGGGAGGAGAAGGGCTGATAAACGAGCTCTGTAATGGGTTTCAGATGCTGATGGACAAGGAGAAGGGCGTGATCACTTTAGAGAGCCTTAGGAGAAACTCTTCCCTTTTGGGTTTGTGGGATATGGGAGAAGAGGAGCTTGTGAGCATGATGAGGGAAGGGGACTTGGATGGCGATGGCGCTTTGAATCAAATGGAGTTTTGCGTTTTGATGTTCAGATTAAGCCCTGAATTGATGGAAGAGTCTCTGTATTGGCTTGATGACGCTTTGGAAAAGGAGTTTAAAGCATCTTGA

Coding sequence (CDS)

ATGGCGAGAAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTTTCCACGATCTGCTGCCGGTAATGGCGGAGAAATTGGGAGGAGAAGGGCTGATAAACGAGCTCTGTAATGGGTTTCAGATGCTGATGGACAAGGAGAAGGGCGTGATCACTTTAGAGAGCCTTAGGAGAAACTCTTCCCTTTTGGGTTTGTGGGATATGGGAGAAGAGGAGCTTGTGAGCATGATGAGGGAAGGGGACTTGGATGGCGATGGCGCTTTGAATCAAATGGAGTTTTGCGTTTTGATGTTCAGATTAAGCCCTGAATTGATGGAAGAGTCTCTGTATTGGCTTGATGACGCTTTGGAAAAGGAGTTTAAAGCATCTTGA
Homology
[Close]
BLAST of CmoCh20G005980 vs. Swiss-Prot
Match: PBP1_ARATH (Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.3e-32
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 14  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSS-LLGLWDMGEEELV 73
           F D  P MA KLGGEGLI E+C GF++LMDK+KGVIT ESLRRN+S +LGL D+ ++++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 74  SMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 119
            M+ EGD D DGALNQMEFCVLMFRLSPELME S   + + +E+EF
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

[Close]
BLAST of CmoCh20G005980 vs. Swiss-Prot
Match: KIC_ARATH (Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 6.9e-30
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 1 

Query: 14  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 73
           + D+LPVMAEK+  E  ++ELC GF +L D E+ +IT ESLRRNS +LG+  M +E+   
Sbjct: 22  YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG 81

Query: 74  MMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 118
           M+REGDLDGDGALNQ EFCVLM RLSPE+ME++  WL+ AL +E
Sbjct: 82  MVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

[Close]
BLAST of CmoCh20G005980 vs. Swiss-Prot
Match: CETN1_MOUSE (Centrin-1 OS=Mus musculus GN=Cetn1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 1 

Query: 14  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 73
           F+D L VM +K+  +    E+   F++  D E G I+ ++L+R ++ LG   + +EEL  
Sbjct: 86  FNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGE-SLTDEELQE 145

Query: 74  MMREGDLDGDGALNQMEFCVLM 96
           M+ E D DGDG +N+ EF  +M
Sbjct: 146 MIDEADRDGDGEVNEEEFLKIM 166

[Close]
BLAST of CmoCh20G005980 vs. Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-07
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 1 

Query: 8   GGGGGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMG 67
           G G   F D L VM +K+  +    E+   F++  D E G I+ ++L+R +  LG  ++ 
Sbjct: 80  GTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGE-NLS 139

Query: 68  EEELVSMMREGDLDGDGALNQMEFCVLMFRLS 100
           +EEL  M+ E D DGDG +N+ EF  +M + S
Sbjct: 140 DEELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]
BLAST of CmoCh20G005980 vs. Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.8e-07
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 8   GGGGGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMG 67
           G G   F+D L VM +K+  +    E+   F++  D E G I+ ++L+R ++ LG  ++ 
Sbjct: 80  GTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGE-NLT 139

Query: 68  EEELVSMMREGDLDGDGALNQMEFCVLMFRLS 100
           +EEL  M+ E D DGDG +N+ EF  +M + S
Sbjct: 140 DEELQEMIDEADRDGDGEVNEEEFLRIMKKTS 170

[Close]
BLAST of CmoCh20G005980 vs. TrEMBL
Match: A0A0A0KCV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G120930 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.7e-44
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 1 

Query: 10  GGGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEE 69
           GG  F DLLPVMAEKLGGEGLI ELCNGF++LMDKEKGVITLESLRRNS LLG+ DM EE
Sbjct: 5   GGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSWLLGVRDMAEE 64

Query: 70  ELVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 119
           EL+SMMREGDLDGDGALNQMEFCVLMFRLSP+LM+ SLYWL  ALE EF
Sbjct: 65  ELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 113

[Close]
BLAST of CmoCh20G005980 vs. TrEMBL
Match: B9I6J5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s14730g PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.2e-42
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 14  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 73
           F DLLPVMA KLGGEGLINELCNGFQ+LMDK++GVIT+ESLRRNSS LGL D+ ++EL S
Sbjct: 10  FEDLLPVMANKLGGEGLINELCNGFQLLMDKDRGVITMESLRRNSSFLGLQDLSDDELAS 69

Query: 74  MMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEFKA 121
           M++EGDLDGDGALNQMEFCVLMFRLSPELM+ES +WL++A E+E K+
Sbjct: 70  MVKEGDLDGDGALNQMEFCVLMFRLSPELMQESRFWLEEAFEEELKS 116

[Close]
BLAST of CmoCh20G005980 vs. TrEMBL
Match: A0A0B2QRZ1_GLYSO (Calcium-binding protein PBP1 OS=Glycine soja GN=glysoja_020799 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.6e-41
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 11  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 70
           G GF DLLPVMA KLGGEGL+ ELCNGF++L+DKEKGVITLESLRRN++LLGL D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 71  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 118
           LVSMMREGDLDGDGAL QMEFCVLMFRLSP+LMEES +WL++AL+ E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]
BLAST of CmoCh20G005980 vs. TrEMBL
Match: C6T3M0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.6e-41
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 11  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 70
           G GF DLLPVMA KLGGEGL+ ELCNGF++L+DKEKGVITLESLRRN++LLGL D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 71  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 118
           LVSMMREGDLDGDGAL QMEFCVLMFRLSP+LMEES +WL++AL+ E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]
BLAST of CmoCh20G005980 vs. TrEMBL
Match: I1LRV1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G103600 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.6e-41
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 11  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 70
           G GF DLLPVMA KLGGEGL+ ELCNGF++L+DKEKGVITLESLRRN++LLGL D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 71  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 118
           LVSMMREGDLDGDGAL QMEFCVLMFRLSP+LMEES +WL++AL+ E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]
BLAST of CmoCh20G005980 vs. TAIR10
Match: AT4G27280.1 (AT4G27280.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 144.4 bits (363), Expect = 4.5e-35
Identity = 70/106 (66.04%), Postives = 87/106 (82.08%), Query Frame = 1 

Query: 14  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRN-SSLLGLWDMGEEELV 73
           FHD LP MA  LGGEGLI ELCNGF++LMD+EKGVIT ESLRRN +++LGL D+ +E++ 
Sbjct: 19  FHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDEDVR 78

Query: 74  SMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 119
            M++EGD D DGALNQMEFCVLMFRLSP+LME S   + + +E+EF
Sbjct: 79  CMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCLVTEVIEEEF 124

[Close]
BLAST of CmoCh20G005980 vs. TAIR10
Match: AT5G54490.1 (AT5G54490.1 pinoid-binding protein 1)

HSP 1 Score: 138.7 bits (348), Expect = 2.4e-33
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 14  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSS-LLGLWDMGEEELV 73
           F D  P MA KLGGEGLI E+C GF++LMDK+KGVIT ESLRRN+S +LGL D+ ++++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 74  SMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 119
            M+ EGD D DGALNQMEFCVLMFRLSPELME S   + + +E+EF
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

[Close]
BLAST of CmoCh20G005980 vs. TAIR10
Match: AT2G46600.1 (AT2G46600.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 131.3 bits (329), Expect = 3.9e-31
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 1 

Query: 14  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 73
           + D+LPVMAEK+  E  ++ELC GF +L D E+ +IT ESLRRNS +LG+  M +E+   
Sbjct: 22  YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG 81

Query: 74  MMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 118
           M+REGDLDGDGALNQ EFCVLM RLSPE+ME++  WL+ AL +E
Sbjct: 82  MVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

[Close]
BLAST of CmoCh20G005980 vs. NCBI nr
Match: gi|449444586|ref|XP_004140055.1| (PREDICTED: calcium-binding protein PBP1-like [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-43
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 1 

Query: 10  GGGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEE 69
           GG  F DLLPVMAEKLGGEGLI ELCNGF++LMDKEKGVITLESLRRNS LLG+ DM EE
Sbjct: 5   GGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSWLLGVRDMAEE 64

Query: 70  ELVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 119
           EL+SMMREGDLDGDGALNQMEFCVLMFRLSP+LM+ SLYWL  ALE EF
Sbjct: 65  ELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 113

[Close]
BLAST of CmoCh20G005980 vs. NCBI nr
Match: gi|743910034|ref|XP_011048514.1| (PREDICTED: calcium-binding protein PBP1-like [Populus euphratica])

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-42
Identity = 84/107 (78.50%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 14  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 73
           F DLLPVMA KLGGEGLINELCNGFQ+LMDK++GVIT+ESLRRNSS LGL D+ ++EL S
Sbjct: 10  FEDLLPVMANKLGGEGLINELCNGFQLLMDKDRGVITMESLRRNSSFLGLQDLSDDELAS 69

Query: 74  MMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEFKA 121
           M++EGDLDGDGALNQMEFCVLMFRLSPELM+ES +WL+DA E+E K+
Sbjct: 70  MVKEGDLDGDGALNQMEFCVLMFRLSPELMQESRFWLEDAFEEELKS 116

[Close]
BLAST of CmoCh20G005980 vs. NCBI nr
Match: gi|224124692|ref|XP_002319397.1| (hypothetical protein POPTR_0013s14730g [Populus trichocarpa])

HSP 1 Score: 179.1 bits (453), Expect = 4.6e-42
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 14  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 73
           F DLLPVMA KLGGEGLINELCNGFQ+LMDK++GVIT+ESLRRNSS LGL D+ ++EL S
Sbjct: 10  FEDLLPVMANKLGGEGLINELCNGFQLLMDKDRGVITMESLRRNSSFLGLQDLSDDELAS 69

Query: 74  MMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEFKA 121
           M++EGDLDGDGALNQMEFCVLMFRLSPELM+ES +WL++A E+E K+
Sbjct: 70  MVKEGDLDGDGALNQMEFCVLMFRLSPELMQESRFWLEEAFEEELKS 116

[Close]
BLAST of CmoCh20G005980 vs. NCBI nr
Match: gi|351727699|ref|NP_001236402.1| (uncharacterized protein LOC100527206 [Glycine max])

HSP 1 Score: 175.6 bits (444), Expect = 5.1e-41
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 11  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 70
           G GF DLLPVMA KLGGEGL+ ELCNGF++L+DKEKGVITLESLRRN++LLGL D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 71  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 118
           LVSMMREGDLDGDGAL QMEFCVLMFRLSP+LMEES +WL++AL+ E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]
BLAST of CmoCh20G005980 vs. NCBI nr
Match: gi|734380494|gb|KHN22869.1| (Calcium-binding protein PBP1 [Glycine soja])

HSP 1 Score: 175.6 bits (444), Expect = 5.1e-41
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 11  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 70
           G GF DLLPVMA KLGGEGL+ ELCNGF++L+DKEKGVITLESLRRN++LLGL D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 71  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 118
           LVSMMREGDLDGDGAL QMEFCVLMFRLSP+LMEES +WL++AL+ E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

The following BLAST results are available for this feature:
BLAST of CmoCh20G005980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PBP1_ARATH4.3e-3264.15Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1[more]
KIC_ARATH6.9e-3059.62Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2[more]
CETN1_MOUSE1.3e-0736.59Centrin-1 OS=Mus musculus GN=Cetn1 PE=1 SV=1[more]
CETN2_BOVIN2.8e-0735.87Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1[more]
CETN1_HUMAN4.8e-0735.87Centrin-1 OS=Homo sapiens GN=CETN1 PE=1 SV=1[more]
BLAST of CmoCh20G005980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCV2_CUCSA7.7e-4484.40Uncharacterized protein OS=Cucumis sativus GN=Csa_6G120930 PE=4 SV=1[more]
B9I6J5_POPTR3.2e-4277.57Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s14730g PE=4 SV=1[more]
A0A0B2QRZ1_GLYSO3.6e-4179.44Calcium-binding protein PBP1 OS=Glycine soja GN=glysoja_020799 PE=4 SV=1[more]
C6T3M0_SOYBN3.6e-4179.44Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
I1LRV1_SOYBN3.6e-4179.44Uncharacterized protein OS=Glycine max GN=GLYMA_12G103600 PE=4 SV=1[more]
BLAST of CmoCh20G005980 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G27280.14.5e-3566.04 Calcium-binding EF-hand family protein[more]
AT5G54490.12.4e-3364.15 pinoid-binding protein 1[more]
AT2G46600.13.9e-3159.62 Calcium-binding EF-hand family protein[more]
BLAST of CmoCh20G005980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444586|ref|XP_004140055.1|1.1e-4384.40PREDICTED: calcium-binding protein PBP1-like [Cucumis sativus][more]
gi|743910034|ref|XP_011048514.1|1.6e-4278.50PREDICTED: calcium-binding protein PBP1-like [Populus euphratica][more]
gi|224124692|ref|XP_002319397.1|4.6e-4277.57hypothetical protein POPTR_0013s14730g [Populus trichocarpa][more]
gi|351727699|ref|NP_001236402.1|5.1e-4179.44uncharacterized protein LOC100527206 [Glycine max][more]
gi|734380494|gb|KHN22869.1|5.1e-4179.44Calcium-binding protein PBP1 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009060 aerobic respiration
biological_process GO:0051301 cell division
biological_process GO:0015994 chlorophyll metabolic process
biological_process GO:0048825 cotyledon development
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0042542 response to hydrogen peroxide
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0008199 ferric iron binding
molecular_function GO:0004322 ferroxidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G005980.1CmoCh20G005980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 45..97
score: 2.2
IPR002048EF-hand domainSMARTSM00054efh_1coord: 70..98
score: 0.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 66..101
score: 10
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 14..98
score: 4.0
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 29..109
score: 3.91
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 79..91
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 14..121
score: 7.0
NoneNo IPR availablePANTHERPTHR10891:SF585SUBFAMILY NOT NAMEDcoord: 14..121
score: 7.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G005980Cucsa.119690Cucumber (Gy14) v1cgycmoB0298
CmoCh20G005980CmaCh20G006480Cucurbita maxima (Rimu)cmacmoB552
CmoCh20G005980CmaCh02G001360Cucurbita maxima (Rimu)cmacmoB608
CmoCh20G005980Csa6G120930Cucumber (Chinese Long) v2cmocuB556
CmoCh20G005980ClCG02G011280Watermelon (Charleston Gray)cmowcgB498
CmoCh20G005980CSPI06G09830Wild cucumber (PI 183967)cmocpiB561
CmoCh20G005980Lsi10G008480Bottle gourd (USVL1VR-Ls)cmolsiB494
CmoCh20G005980Cp4.1LG16g04730Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G005980CsaV3_6G012270Cucumber (Chinese Long) v3cmocucB0665
CmoCh20G005980Cla97C02G036990Watermelon (97103) v2cmowmbB565
CmoCh20G005980Bhi10G000942Wax gourdcmowgoB0694
CmoCh20G005980CsGy6G009950Cucumber (Gy14) v2cgybcmoB781
CmoCh20G005980Carg03155Silver-seed gourdcarcmoB0464
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh20G005980CmoCh02G001380Cucurbita moschata (Rifu)cmocmoB406
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G005980Silver-seed gourdcarcmoB0043
CmoCh20G005980Silver-seed gourdcarcmoB1184
CmoCh20G005980Cucumber (Chinese Long) v3cmocucB0672
CmoCh20G005980Watermelon (97103) v2cmowmbB552
CmoCh20G005980Wax gourdcmowgoB0681
CmoCh20G005980Cucurbita moschata (Rifu)cmocmoB381
CmoCh20G005980Cucumber (Gy14) v1cgycmoB0408
CmoCh20G005980Cucurbita maxima (Rimu)cmacmoB517
CmoCh20G005980Wild cucumber (PI 183967)cmocpiB568
CmoCh20G005980Cucumber (Chinese Long) v2cmocuB562
CmoCh20G005980Melon (DHL92) v3.5.1cmomeB490
CmoCh20G005980Melon (DHL92) v3.5.1cmomeB504
CmoCh20G005980Watermelon (Charleston Gray)cmowcgB484
CmoCh20G005980Watermelon (97103) v1cmowmB526
CmoCh20G005980Cucurbita pepo (Zucchini)cmocpeB515
CmoCh20G005980Cucurbita pepo (Zucchini)cmocpeB525
CmoCh20G005980Cucurbita pepo (Zucchini)cmocpeB536
CmoCh20G005980Bottle gourd (USVL1VR-Ls)cmolsiB499
CmoCh20G005980Cucumber (Gy14) v2cgybcmoB937
CmoCh20G005980Melon (DHL92) v3.6.1cmomedB566
CmoCh20G005980Melon (DHL92) v3.6.1cmomedB575
CmoCh20G005980Melon (DHL92) v3.6.1cmomedB577